Wall clock time and date at job start Mon Mar 30 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.39011 * 126.76763 * 300.02550 * 4 2 1 6 6 C 1.41494 * 126.02411 * 359.97438 * 5 4 2 7 7 H 1.07998 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.39740 * 120.00041 * 179.97438 * 6 5 4 9 9 N 1.30980 * 120.00106 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47370 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46821 * 120.00590 * 10 8 6 13 13 H 1.48499 * 109.47498 * 240.00113 * 10 8 6 14 14 N 1.34840 * 107.95626 * 179.97438 * 5 4 2 15 15 N 1.28666 * 109.63833 * 359.97438 * 14 5 4 16 16 N 1.35021 * 126.77444 * 119.70681 * 4 2 1 17 17 C 1.46502 * 126.49134 * 359.97438 * 16 4 2 18 18 C 1.52996 * 109.47272 * 89.99520 * 17 16 4 19 19 H 1.08996 * 109.47305 * 304.99813 * 18 17 16 20 20 C 1.52999 * 109.46881 * 65.00023 * 18 17 16 21 21 C 1.53001 * 109.47124 * 184.99986 * 18 17 16 22 22 C 1.52997 * 109.47329 * 175.00360 * 21 18 17 23 23 O 1.42901 * 109.46999 * 180.02562 * 22 21 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.96996 * 120.00321 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.46873 * 209.99981 * 17 16 4 33 33 H 1.09005 * 109.46881 * 329.99434 * 17 16 4 34 34 H 1.08999 * 109.47054 * 299.99694 * 20 18 17 35 35 H 1.09002 * 109.47210 * 60.00224 * 20 18 17 36 36 H 1.08997 * 109.46984 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.46631 * 295.00340 * 21 18 17 38 38 H 1.09002 * 109.47304 * 54.99920 * 21 18 17 39 39 H 1.08999 * 109.46546 * 300.00166 * 22 21 18 40 40 H 1.08997 * 109.46859 * 59.99691 * 22 21 18 41 41 H 0.96704 * 113.99577 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.7844 -0.3607 2.5528 6 6 1.0076 0.7376 2.9914 7 1 0.5438 1.3934 2.2696 8 6 0.8398 0.9730 4.3586 9 7 1.4020 0.1773 5.2340 10 14 -0.1863 2.4226 4.9376 11 1 -0.7085 3.1613 3.7599 12 1 -1.3230 1.9290 5.7558 13 1 0.6565 3.3297 5.7575 14 7 2.4145 -1.2525 3.3439 15 7 3.0269 -2.1191 2.6162 16 7 2.8071 -1.8157 1.2660 17 6 3.3216 -2.5566 0.1115 18 6 4.6818 -1.9865 -0.2954 19 1 4.5884 -0.9152 -0.4730 20 6 5.6934 -2.2313 0.8261 21 6 5.1617 -2.6756 -1.5744 22 6 6.4599 -2.0207 -2.0503 23 8 6.9077 -2.6640 -3.2452 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.2858 0.3409 6.1830 32 1 3.4324 -3.6084 0.3749 33 1 2.6242 -2.4620 -0.7210 34 1 5.3515 -1.7404 1.7373 35 1 5.7868 -3.3027 1.0037 36 1 6.6626 -1.8256 0.5361 37 1 5.3401 -3.7319 -1.3729 38 1 4.4001 -2.5769 -2.3479 39 1 6.2813 -0.9645 -2.2516 40 1 7.2214 -2.1195 -1.2767 41 1 7.7280 -2.2991 -3.6046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545879.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:00 Heat of formation + Delta-G solvation = -11.194676 kcal Electronic energy + Delta-G solvation = -21189.673571 eV Core-core repulsion = 18104.777205 eV Total energy + Delta-G solvation = -3084.896366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92494 -38.69116 -36.93733 -36.36461 -35.14304 -33.29506 -30.43813 -29.59930 -28.03026 -27.80773 -26.89550 -24.32157 -23.24760 -22.08033 -21.22692 -20.04249 -19.03257 -18.28664 -16.90522 -16.71834 -16.54881 -16.13796 -15.61090 -15.11139 -15.01937 -14.82165 -14.53807 -13.98344 -13.73662 -13.60736 -13.19340 -13.05643 -12.94040 -12.83432 -12.76455 -12.65786 -12.34903 -12.16336 -11.93633 -11.91188 -11.81389 -11.72696 -11.44422 -11.37245 -11.11065 -10.81194 -10.58336 -10.15020 -9.24023 -8.23647 -6.08886 1.08541 1.44805 1.45445 1.59672 2.04468 2.36711 2.41433 3.29914 3.61916 3.67593 3.79107 4.01858 4.11311 4.14930 4.21805 4.37307 4.45000 4.48862 4.50068 4.60321 4.68395 4.76188 4.91827 4.92976 4.98233 4.99108 5.04621 5.06584 5.17783 5.25452 5.28490 5.36696 5.37570 5.57856 5.59437 5.60794 5.84798 6.49262 6.54515 6.90537 6.99645 7.18346 8.39351 8.76332 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.005074 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.590468 B = 5517.131112 C = 5988.334215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.008 3.992 3 C -0.138 4.138 4 C -0.073 4.073 5 C 0.112 3.888 6 C -0.468 4.468 7 H 0.100 0.900 8 C 0.018 3.982 9 N -0.832 5.832 10 Si 0.975 3.025 11 H -0.246 1.246 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.289 5.289 15 N -0.172 5.172 16 N -0.357 5.357 17 C 0.127 3.873 18 C -0.088 4.088 19 H 0.071 0.929 20 C -0.143 4.143 21 C -0.103 4.103 22 C 0.076 3.924 23 O -0.593 6.593 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.268 0.732 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 0.136 -16.783 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.013 4.013 3 C -0.195 4.195 4 C -0.209 4.209 5 C -0.021 4.021 6 C -0.505 4.505 7 H 0.118 0.882 8 C -0.194 4.194 9 N -0.461 5.461 10 Si 0.798 3.202 11 H -0.169 1.169 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.158 5.158 15 N -0.146 5.146 16 N -0.150 5.150 17 C 0.005 3.995 18 C -0.108 4.108 19 H 0.089 0.911 20 C -0.200 4.200 21 C -0.141 4.141 22 C -0.002 4.002 23 O -0.401 6.401 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.588 -1.325 -15.440 16.473 hybrid contribution -0.194 1.238 0.344 1.299 sum 5.394 -0.088 -15.096 16.031 Atomic orbital electron populations 1.21810 0.94061 1.01228 1.02637 1.19338 0.95904 0.95166 0.90845 1.21787 1.00006 0.95149 1.02594 1.22256 1.06062 0.94917 0.97664 1.19475 0.99000 0.96422 0.87172 1.19017 1.29346 1.09761 0.92332 0.88226 1.26719 0.96250 0.99384 0.97076 1.70206 1.37605 1.36119 1.02177 0.85252 0.77914 0.78029 0.79039 1.16881 1.20356 1.20317 1.75037 1.10783 1.04013 1.25930 1.81373 1.25584 1.23461 0.84213 1.49892 1.36833 1.21006 1.07297 1.21940 0.96065 0.96202 0.85263 1.21296 0.93572 1.00556 0.95392 0.91099 1.21811 0.98909 1.01838 0.97470 1.21366 0.97242 1.00319 0.95182 1.22189 0.95846 0.95705 0.86433 1.86401 1.47355 1.63472 1.42917 0.89863 0.92958 0.94152 0.89766 0.93003 0.94106 0.89894 0.92216 0.88983 0.87321 0.95718 0.92196 0.91047 0.90812 0.90092 0.92890 0.92940 0.75279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.04 71.98 0.65 -3.75 16 2 C 0.01 0.28 3.03 -11.54 -0.03 0.24 16 3 C -0.14 -4.30 9.04 71.98 0.65 -3.65 16 4 C -0.07 -3.28 5.80 42.26 0.24 -3.03 16 5 C 0.11 6.23 6.60 39.67 0.26 6.49 16 6 C -0.47 -25.36 7.69 23.44 0.18 -25.18 16 7 H 0.10 4.90 4.66 -2.91 -0.01 4.88 16 8 C 0.02 1.01 5.49 85.18 0.47 1.48 16 9 N -0.83 -49.76 11.92 21.80 0.26 -49.50 16 10 Si 0.98 41.06 29.56 68.60 2.03 43.09 16 11 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 14 N -0.29 -17.52 10.55 -52.52 -0.55 -18.07 16 15 N -0.17 -9.18 12.83 37.02 0.48 -8.71 16 16 N -0.36 -15.27 3.23 -331.63 -1.07 -16.34 16 17 C 0.13 3.78 5.56 86.38 0.48 4.26 16 18 C -0.09 -2.23 2.59 -10.79 -0.03 -2.26 16 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.14 -4.12 8.81 71.98 0.63 -3.48 16 21 C -0.10 -1.99 5.05 30.59 0.15 -1.83 16 22 C 0.08 1.31 6.80 71.98 0.49 1.80 16 23 O -0.59 -10.23 13.66 -148.98 -2.04 -12.26 16 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.93 5.74 -2.39 -0.01 1.92 16 26 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.08 2.28 6.88 -2.39 -0.02 2.27 16 28 H 0.05 1.91 5.74 -2.39 -0.01 1.89 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.27 14.89 8.30 -92.71 -0.77 14.12 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.11 2.63 7.16 -2.38 -0.02 2.62 16 34 H 0.02 0.93 6.96 -2.39 -0.02 0.91 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.70 6.56 -2.39 -0.02 1.69 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.87 6.56 -2.39 -0.02 0.85 16 41 H 0.40 3.17 9.12 -74.05 -0.68 2.49 16 Total: -1.00 -74.94 327.69 3.61 -71.33 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.36 Total: 19.40 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.15 Total: -28.93 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -0.89 Total: -92.63 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -2.04 Total: -12.26 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.94 3.61 -71.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545879.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.131 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds