Wall clock time and date at job start Mon Mar 30 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34364 * 125.93369 * 2 1 4 4 O 1.21593 * 123.11084 * 356.93893 * 3 2 1 5 5 N 1.34085 * 113.77627 * 176.67319 * 3 2 1 6 6 C 1.48177 * 108.79968 * 356.93235 * 5 3 2 7 7 H 1.08998 * 109.86884 * 124.93947 * 6 5 3 8 8 C 1.51642 * 107.94141 * 244.70460 * 6 5 3 9 9 N 1.45534 * 113.23818 * 147.10988 * 8 6 5 10 10 C 1.46901 * 111.04880 * 177.89141 * 9 8 6 11 11 C 1.53003 * 109.46849 * 57.10392 * 10 9 8 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47226 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00151 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99700 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46955 * 90.00258 * 17 15 13 19 19 H 1.48497 * 109.47393 * 210.00262 * 17 15 13 20 20 H 1.48501 * 109.47168 * 330.00562 * 17 15 13 21 21 C 1.47314 * 110.35130 * 301.41964 * 9 8 6 22 22 C 1.52572 * 107.61296 * 69.62184 * 21 9 8 23 23 C 1.46460 * 125.94643 * 180.15718 * 2 1 3 24 24 H 1.08997 * 106.37653 * 75.44458 * 23 2 1 25 25 H 1.08998 * 109.47505 * 0.03015 * 1 2 3 26 26 H 1.09005 * 109.47131 * 120.02985 * 1 2 3 27 27 H 1.08998 * 109.47462 * 240.02872 * 1 2 3 28 28 H 0.97001 * 125.60397 * 176.95188 * 5 3 2 29 29 H 1.09001 * 108.78818 * 269.54865 * 8 6 5 30 30 H 1.08993 * 108.78898 * 27.76946 * 8 6 5 31 31 H 1.08998 * 109.47514 * 177.10660 * 10 9 8 32 32 H 1.08999 * 109.47337 * 297.10531 * 10 9 8 33 33 H 1.08998 * 109.46948 * 299.99706 * 11 10 9 34 34 H 1.08995 * 109.46704 * 60.00310 * 11 10 9 35 35 H 1.08998 * 109.47501 * 300.00346 * 12 11 10 36 36 H 1.08999 * 109.47209 * 60.00131 * 12 11 10 37 37 H 0.97003 * 119.99502 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.83066 * 310.09673 * 21 9 8 39 39 H 1.09002 * 109.83076 * 189.15533 * 21 9 8 40 40 H 1.09000 * 108.81945 * 184.75686 * 22 21 9 41 41 H 1.09000 * 108.81945 * 66.47073 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2535 1.0879 0.0000 4 8 1.8198 2.2226 -0.0544 5 7 3.5626 0.8068 0.0712 6 6 3.7295 -0.6595 0.2043 7 1 4.3841 -1.0309 -0.5841 8 6 4.3478 -0.9381 1.5606 9 7 3.9036 -2.1938 2.1472 10 6 4.5684 -2.4393 3.4339 11 6 4.2983 -1.2670 4.3793 12 6 4.9901 -1.5230 5.7197 13 6 4.7237 -0.3687 6.6511 14 1 4.1208 0.4641 6.3203 15 6 5.2486 -0.3761 7.9261 16 7 5.9823 -1.3905 8.3291 17 14 4.9177 1.0544 9.0808 18 1 3.6799 0.7881 9.8566 19 1 6.0622 1.2125 10.0137 20 1 4.7480 2.2998 8.2900 21 6 2.4385 -2.1977 2.3005 22 6 1.8283 -2.2700 0.9040 23 6 2.3247 -1.1857 -0.0033 24 1 2.2924 -1.5860 -1.0165 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5143 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 4.2822 1.4565 0.0409 29 1 5.4329 -0.9410 1.4579 30 1 4.0644 -0.1397 2.2463 31 1 4.1802 -3.3579 3.8740 32 1 5.6422 -2.5381 3.2752 33 1 4.6866 -0.3485 3.9392 34 1 3.2245 -1.1683 4.5381 35 1 4.6016 -2.4415 6.1596 36 1 6.0640 -1.6221 5.5613 37 1 6.3520 -1.3956 9.2259 38 1 2.1163 -1.2828 2.7979 39 1 2.1301 -3.0650 2.8843 40 1 0.7447 -2.1886 0.9891 41 1 2.0725 -3.2365 0.4633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001614857594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:39 Heat of formation + Delta-G solvation = -10.631475 kcal Electronic energy + Delta-G solvation = -21131.768746 eV Core-core repulsion = 18046.896802 eV Total energy + Delta-G solvation = -3084.871944 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65157 -38.51671 -36.32073 -34.70891 -33.77289 -32.24463 -30.54373 -29.39078 -27.64932 -26.36749 -24.31731 -23.36292 -22.06386 -20.88075 -20.52895 -18.87602 -17.64232 -16.76411 -16.29163 -16.13123 -15.46557 -15.26307 -14.77862 -14.55855 -14.42527 -14.07810 -13.41939 -13.31078 -13.10997 -13.04670 -12.46378 -12.34609 -12.20656 -11.92646 -11.51905 -11.29705 -11.11783 -10.85626 -10.78750 -10.65403 -10.53673 -10.20121 -9.69022 -9.49493 -9.38290 -9.21250 -8.68051 -8.37495 -8.00562 -6.02564 -4.05158 2.46494 3.08193 3.30204 3.36588 3.40652 3.63091 4.02288 4.23795 4.44249 4.56801 4.64318 4.90915 4.99661 5.08885 5.25762 5.33069 5.33533 5.45217 5.49518 5.56257 5.63729 5.71023 5.80296 5.88982 5.90011 5.96980 6.07234 6.21033 6.51189 6.61976 6.69905 6.97249 7.03082 7.18100 7.28736 7.38371 7.62607 7.76272 7.96488 8.39859 8.53555 9.01633 9.59349 11.08423 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004417 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.900821 B = 6337.847920 C = 6872.304565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.634 5.634 3 C 0.699 3.301 4 O -0.591 6.591 5 N -0.741 5.741 6 C 0.140 3.860 7 H 0.098 0.902 8 C 0.038 3.962 9 N -0.531 5.531 10 C 0.054 3.946 11 C -0.145 4.145 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.051 3.949 22 C -0.117 4.117 23 C 0.139 3.861 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.429 0.571 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -3.729 -18.787 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.374 5.374 3 C 0.400 3.600 4 O -0.469 6.469 5 N -0.403 5.403 6 C 0.035 3.965 7 H 0.116 0.884 8 C -0.091 4.091 9 N -0.255 5.255 10 C -0.073 4.073 11 C -0.184 4.184 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.077 4.077 22 C -0.155 4.155 23 C 0.034 3.966 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.398 -3.616 -19.024 20.729 hybrid contribution 0.070 1.600 1.363 2.103 sum -7.328 -2.015 -17.660 19.226 Atomic orbital electron populations 1.21348 0.75939 1.03796 1.01178 1.47235 1.06020 1.05819 1.78335 1.16022 0.82068 0.84555 0.77392 1.90942 1.76703 1.20666 1.58632 1.45664 1.06745 1.08499 1.79383 1.21302 0.95956 0.80341 0.98944 0.88440 1.21964 1.00475 0.92748 0.93957 1.62148 1.05389 1.32315 1.25629 1.22367 0.99083 0.99236 0.86621 1.22233 1.00521 0.97081 0.98589 1.19009 0.95492 0.96959 0.89754 1.21245 1.31768 1.05102 0.97842 0.92973 1.25011 0.95145 0.95990 0.98196 1.69962 1.34441 1.30448 1.18600 0.86621 0.77834 0.82907 0.80834 1.20640 1.21139 1.19918 1.22113 0.88264 1.01715 0.95638 1.21074 1.00639 0.98028 0.95792 1.20401 0.88299 0.87209 1.00684 0.91582 0.89690 0.92199 0.92034 0.72909 0.89856 0.93179 0.90686 0.90810 0.93269 0.93491 0.96597 0.96570 0.92988 0.93997 0.89914 0.90575 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.09 10.49 59.85 0.63 1.72 16 2 N -0.63 -7.43 3.26 -182.79 -0.60 -8.02 16 3 C 0.70 10.24 8.61 -87.91 -0.76 9.48 16 4 O -0.59 -11.00 17.36 5.28 0.09 -10.91 16 5 N -0.74 -8.72 5.84 -59.32 -0.35 -9.07 16 6 C 0.14 1.43 4.07 -68.49 -0.28 1.15 16 7 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.04 0.47 4.57 -5.25 -0.02 0.45 16 9 N -0.53 -6.91 4.87 -236.56 -1.15 -8.06 16 10 C 0.05 0.85 5.37 -3.82 -0.02 0.83 16 11 C -0.15 -2.89 4.40 -26.73 -0.12 -3.01 16 12 C 0.03 0.65 4.97 -27.89 -0.14 0.51 16 13 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.05 0.61 4.99 -3.82 -0.02 0.59 16 22 C -0.12 -1.06 5.72 -28.51 -0.16 -1.22 16 23 C 0.14 1.35 3.19 -70.31 -0.22 1.13 16 24 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.08 0.88 7.58 -51.93 -0.39 0.49 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 28 H 0.43 4.41 8.96 -40.82 -0.37 4.05 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.76 5.91 -51.93 -0.31 0.45 16 31 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.00 6.40 -51.93 -0.33 0.66 16 34 H 0.05 0.95 6.88 -51.93 -0.36 0.60 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.04 0.60 7.08 -51.93 -0.37 0.24 16 39 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 40 H 0.08 0.61 6.32 -51.93 -0.33 0.28 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -33.76 319.84 -9.57 -43.33 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.57 Total: -0.87 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.53 Total: -1.97 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -1.36 Total: -51.28 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.76 -9.57 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614857594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.695 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds