Wall clock time and date at job start Mon Mar 30 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34364 * 125.93369 * 2 1 4 4 O 1.21593 * 123.11084 * 356.93893 * 3 2 1 5 5 N 1.34085 * 113.77627 * 176.67319 * 3 2 1 6 6 C 1.48177 * 108.79968 * 356.93235 * 5 3 2 7 7 H 1.08998 * 109.86884 * 124.93947 * 6 5 3 8 8 C 1.51642 * 107.94141 * 244.70460 * 6 5 3 9 9 N 1.45534 * 113.23818 * 147.10988 * 8 6 5 10 10 C 1.46901 * 111.04880 * 177.89141 * 9 8 6 11 11 C 1.53003 * 109.46849 * 57.10392 * 10 9 8 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47226 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99939 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00151 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99700 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46955 * 90.00258 * 17 15 13 19 19 H 1.48497 * 109.47393 * 210.00262 * 17 15 13 20 20 H 1.48501 * 109.47168 * 330.00562 * 17 15 13 21 21 C 1.47314 * 110.35130 * 301.41964 * 9 8 6 22 22 C 1.52572 * 107.61296 * 69.62184 * 21 9 8 23 23 C 1.46460 * 125.94643 * 180.15718 * 2 1 3 24 24 H 1.08997 * 106.37653 * 75.44458 * 23 2 1 25 25 H 1.08998 * 109.47505 * 0.03015 * 1 2 3 26 26 H 1.09005 * 109.47131 * 120.02985 * 1 2 3 27 27 H 1.08998 * 109.47462 * 240.02872 * 1 2 3 28 28 H 0.97001 * 125.60397 * 176.95188 * 5 3 2 29 29 H 1.09001 * 108.78818 * 269.54865 * 8 6 5 30 30 H 1.08993 * 108.78898 * 27.76946 * 8 6 5 31 31 H 1.08998 * 109.47514 * 177.10660 * 10 9 8 32 32 H 1.08999 * 109.47337 * 297.10531 * 10 9 8 33 33 H 1.08998 * 109.46948 * 299.99706 * 11 10 9 34 34 H 1.08995 * 109.46704 * 60.00310 * 11 10 9 35 35 H 1.08998 * 109.47501 * 300.00346 * 12 11 10 36 36 H 1.08999 * 109.47209 * 60.00131 * 12 11 10 37 37 H 0.97003 * 119.99502 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.83066 * 310.09673 * 21 9 8 39 39 H 1.09002 * 109.83076 * 189.15533 * 21 9 8 40 40 H 1.09000 * 108.81945 * 184.75686 * 22 21 9 41 41 H 1.09000 * 108.81945 * 66.47073 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2535 1.0879 0.0000 4 8 1.8198 2.2226 -0.0544 5 7 3.5626 0.8068 0.0712 6 6 3.7295 -0.6595 0.2043 7 1 4.3841 -1.0309 -0.5841 8 6 4.3478 -0.9381 1.5606 9 7 3.9036 -2.1938 2.1472 10 6 4.5684 -2.4393 3.4339 11 6 4.2983 -1.2670 4.3793 12 6 4.9901 -1.5230 5.7197 13 6 4.7237 -0.3687 6.6511 14 1 4.1208 0.4641 6.3203 15 6 5.2486 -0.3761 7.9261 16 7 5.9823 -1.3905 8.3291 17 14 4.9177 1.0544 9.0808 18 1 3.6799 0.7881 9.8566 19 1 6.0622 1.2125 10.0137 20 1 4.7480 2.2998 8.2900 21 6 2.4385 -2.1977 2.3005 22 6 1.8283 -2.2700 0.9040 23 6 2.3247 -1.1857 -0.0033 24 1 2.2924 -1.5860 -1.0165 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5143 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 4.2822 1.4565 0.0409 29 1 5.4329 -0.9410 1.4579 30 1 4.0644 -0.1397 2.2463 31 1 4.1802 -3.3579 3.8740 32 1 5.6422 -2.5381 3.2752 33 1 4.6866 -0.3485 3.9392 34 1 3.2245 -1.1683 4.5381 35 1 4.6016 -2.4415 6.1596 36 1 6.0640 -1.6221 5.5613 37 1 6.3520 -1.3956 9.2259 38 1 2.1163 -1.2828 2.7979 39 1 2.1301 -3.0650 2.8843 40 1 0.7447 -2.1886 0.9891 41 1 2.0725 -3.2365 0.4633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001614857594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:39 Heat of formation + Delta-G solvation = -36.042533 kcal Electronic energy + Delta-G solvation = -21132.870652 eV Core-core repulsion = 18046.896802 eV Total energy + Delta-G solvation = -3085.973850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.58792 -39.65377 -37.52671 -35.65275 -35.57138 -33.77208 -31.93677 -30.43199 -28.67198 -27.83932 -25.77392 -24.26975 -23.58816 -22.20366 -21.66922 -19.93484 -18.64760 -18.50077 -17.59661 -17.11404 -16.70468 -16.48496 -16.25055 -15.76382 -15.65441 -15.33343 -14.66385 -14.47774 -14.21861 -13.99110 -13.95829 -13.64255 -13.32284 -13.06812 -13.00728 -12.70186 -12.62451 -12.50254 -12.26203 -12.02219 -11.61647 -11.46964 -11.37344 -11.36377 -11.23576 -10.59144 -10.44653 -9.53267 -9.22282 -8.24167 -6.35672 1.35105 1.35606 1.46896 1.58816 2.01731 2.36152 2.72030 3.07024 3.07982 3.39714 3.70946 3.85140 4.05742 4.09302 4.20779 4.29074 4.32469 4.48026 4.60928 4.62195 4.67670 4.69826 4.78346 4.87714 4.93286 4.96709 5.00799 5.08832 5.15870 5.19519 5.27221 5.45830 5.67767 5.73622 5.80918 6.03112 6.09418 6.15094 6.22262 6.42327 6.80443 7.33581 7.50059 8.86485 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004417 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.900821 B = 6337.847920 C = 6872.304565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.633 5.633 3 C 0.685 3.315 4 O -0.642 6.642 5 N -0.736 5.736 6 C 0.144 3.856 7 H 0.132 0.868 8 C 0.040 3.960 9 N -0.516 5.516 10 C 0.065 3.935 11 C -0.127 4.127 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.047 0.953 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.047 3.953 22 C -0.108 4.108 23 C 0.132 3.868 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.433 0.567 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.039 0.961 35 H -0.004 1.004 36 H -0.004 1.004 37 H 0.265 0.735 38 H 0.012 0.988 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -4.695 -20.139 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.372 5.372 3 C 0.385 3.615 4 O -0.525 6.525 5 N -0.397 5.397 6 C 0.039 3.961 7 H 0.150 0.850 8 C -0.090 4.090 9 N -0.238 5.238 10 C -0.063 4.063 11 C -0.166 4.166 12 C -0.008 4.008 13 C -0.585 4.585 14 H 0.066 0.934 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.081 4.081 22 C -0.146 4.146 23 C 0.028 3.972 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.275 0.725 29 H 0.110 0.890 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.970 -4.626 -20.390 22.376 hybrid contribution 0.256 1.869 1.810 2.614 sum -7.714 -2.758 -18.580 20.306 Atomic orbital electron populations 1.21545 0.74728 1.03255 1.03267 1.47457 1.06895 1.05634 1.77232 1.16398 0.83048 0.84560 0.77482 1.90892 1.77700 1.22829 1.61086 1.45690 1.06060 1.09555 1.78417 1.21492 0.97081 0.79263 0.98300 0.85012 1.22018 1.01293 0.91099 0.94581 1.62212 1.05941 1.32409 1.23275 1.22180 0.99724 0.97299 0.87096 1.22005 0.99113 0.98793 0.96722 1.18907 0.94587 0.95205 0.92122 1.21654 1.31961 1.05904 0.98981 0.93429 1.25884 0.94752 0.98754 0.99906 1.70069 1.35169 1.32284 1.19272 0.85550 0.78144 0.79393 0.78601 1.19648 1.20206 1.19483 1.22215 0.87562 1.00476 0.97867 1.21065 1.01251 0.98894 0.93427 1.20664 0.87370 0.86547 1.02580 0.88480 0.91636 0.89173 0.90755 0.72468 0.89035 0.96570 0.90292 0.90524 0.93968 0.94257 0.98581 0.98586 0.92613 0.96957 0.89410 0.89064 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.49 127.77 1.34 3.21 16 2 N -0.63 -13.68 3.26 -850.73 -2.77 -16.45 16 3 C 0.69 19.79 8.61 179.40 1.54 21.33 16 4 O -0.64 -24.54 17.36 -4.01 -0.07 -24.61 16 5 N -0.74 -16.61 5.84 -460.23 -2.69 -19.30 16 6 C 0.14 2.55 4.07 43.71 0.18 2.73 16 7 H 0.13 1.54 8.14 -2.39 -0.02 1.53 16 8 C 0.04 0.93 4.57 86.12 0.39 1.32 16 9 N -0.52 -12.49 4.87 -902.34 -4.39 -16.88 16 10 C 0.06 2.01 5.37 86.30 0.46 2.48 16 11 C -0.13 -5.17 4.40 30.59 0.13 -5.04 16 12 C 0.03 1.55 4.97 29.85 0.15 1.70 16 13 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 14 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.05 1.04 4.99 86.08 0.43 1.47 16 22 C -0.11 -1.57 5.72 29.44 0.17 -1.40 16 23 C 0.13 2.12 3.19 43.47 0.14 2.26 16 24 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 25 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 26 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.07 1.03 7.18 -2.39 -0.02 1.01 16 28 H 0.43 8.74 8.96 -92.71 -0.83 7.90 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.02 0.49 5.91 -2.39 -0.01 0.48 16 31 H 0.08 2.40 8.00 -2.39 -0.02 2.38 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.04 1.75 6.40 -2.39 -0.02 1.74 16 34 H 0.04 1.63 6.88 -2.39 -0.02 1.62 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.01 0.35 7.08 -2.39 -0.02 0.33 16 39 H 0.09 1.88 7.96 -2.39 -0.02 1.86 16 40 H 0.09 1.11 6.32 -2.39 -0.02 1.10 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -75.18 319.84 -1.79 -76.97 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.19 Total: 10.03 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.63 Total: -0.79 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -9.57 Total: -108.76 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.07 Total: -24.61 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.18 -1.79 -76.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001614857594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.927 kcal (2) G-P(sol) polarization free energy of solvation -75.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds