Wall clock time and date at job start Mon Mar 30 2020 04:28:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.46497 * 119.99747 * 2 1
4 4 C 1.50700 * 109.47410 * 269.99753 * 3 2 1
5 5 H 1.08003 * 119.99742 * 0.02562 * 4 3 2
6 6 C 1.37868 * 120.00144 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00284 * 0.02562 * 6 4 3
8 8 Si 1.86802 * 120.00265 * 180.02562 * 6 4 3
9 9 H 1.48500 * 109.47281 * 89.99536 * 8 6 4
10 10 H 1.48500 * 109.47426 * 209.99989 * 8 6 4
11 11 H 1.48503 * 109.47056 * 330.00226 * 8 6 4
12 12 C 1.34773 * 119.99816 * 180.02562 * 2 1 3
13 13 O 1.21604 * 119.99816 * 183.99937 * 12 2 1
14 14 C 1.47432 * 120.00563 * 3.99715 * 12 2 1
15 15 C 1.39749 * 120.20110 * 307.55575 * 14 12 2
16 16 C 1.37844 * 119.91457 * 179.97438 * 15 14 12
17 17 Cl 1.73604 * 119.83743 * 180.02562 * 16 15 14
18 18 C 1.38701 * 120.32518 * 359.74572 * 16 15 14
19 19 C 1.37955 * 120.40968 * 0.51326 * 18 16 15
20 20 C 1.38944 * 120.07879 * 359.48719 * 19 18 16
21 21 N 1.38938 * 120.16439 * 180.23494 * 20 19 18
22 22 H 1.09000 * 109.47025 * 264.54875 * 1 2 3
23 23 H 1.08997 * 109.46987 * 24.55240 * 1 2 3
24 24 H 1.09005 * 109.46980 * 144.55048 * 1 2 3
25 25 H 1.09001 * 109.47541 * 30.00383 * 3 2 1
26 26 H 1.09005 * 109.46554 * 150.00098 * 3 2 1
27 27 H 0.96999 * 120.00112 * 180.02562 * 7 6 4
28 28 H 1.08005 * 120.04237 * 359.95765 * 15 14 12
29 29 H 1.08001 * 119.79729 * 180.25530 * 18 16 15
30 30 H 1.07999 * 119.96251 * 179.76374 * 19 18 16
31 31 H 0.96997 * 119.99689 * 354.82929 * 21 20 19
32 32 H 0.96999 * 120.00256 * 174.83863 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4487 1.7038 -1.4208
5 1 2.0975 1.0962 -2.2417
6 6 3.1269 2.8774 -1.6727
7 7 3.5550 3.6171 -0.6731
8 14 3.4377 3.4171 -3.4338
9 1 2.3079 4.2607 -3.8998
10 1 4.6984 4.1995 -3.4967
11 1 3.5539 2.2202 -4.3051
12 6 2.1389 -1.1672 -0.0005
13 8 3.3527 -1.1685 0.0729
14 6 1.4045 -2.4424 -0.0901
15 6 0.3597 -2.7158 0.7969
16 6 -0.3233 -3.9098 0.7075
17 17 -1.6213 -4.2470 1.8099
18 6 0.0176 -4.8407 -0.2626
19 6 1.0501 -4.5870 -1.1416
20 6 1.7499 -3.3890 -1.0668
21 7 2.7869 -3.1295 -1.9543
22 1 -0.3633 -0.0976 1.0230
23 1 -0.3633 0.9347 -0.4270
24 1 -0.3633 -0.8372 -0.5961
25 1 1.6085 2.0284 0.5139
26 1 3.1500 1.1383 0.5139
27 1 4.0318 4.4430 -0.8503
28 1 0.0880 -1.9926 1.5516
29 1 -0.5259 -5.7717 -0.3276
30 1 1.3120 -5.3185 -1.8918
31 1 3.0736 -3.8143 -2.5787
32 1 3.2244 -2.2638 -1.9494
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000019833354.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:28:10
Heat of formation + Delta-G solvation = -18.351732 kcal
Electronic energy + Delta-G solvation = -18035.284505 eV
Core-core repulsion = 15021.402100 eV
Total energy + Delta-G solvation = -3013.882406 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 268.072 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.07613 -38.02643 -36.44266 -35.03054 -34.08823 -32.72158 -31.16729 -28.54557
-27.69776 -25.92467 -24.00031 -22.65140 -21.79017 -19.08414 -17.16685 -17.02148
-16.68981 -16.52303 -15.52995 -15.04881 -14.49353 -14.35302 -14.05516 -13.82286
-13.42900 -12.89750 -12.55779 -12.21364 -12.09607 -12.03669 -11.83578 -11.44322
-11.24265 -10.95093 -10.88242 -10.62747 -10.21924 -10.16848 -9.69741 -9.15151
-8.88864 -8.48364 -7.71803 -7.45608 -6.09123 -4.14725 1.12497 1.43020
2.26876 3.25002 3.26336 3.33148 3.36430 3.72118 3.93640 4.03781
4.39584 4.75823 4.87144 5.17331 5.25809 5.33690 5.51539 5.72406
5.82669 5.94298 6.03772 6.11819 6.23855 6.28236 6.60836 7.01297
7.39171 7.43495 7.51027 7.82020 7.86748 8.17313 8.34057 8.82221
8.99447 9.50600 10.98852
Molecular weight = 268.07amu
Principal moments of inertia in cm(-1)
A = 0.028107 B = 0.005090 C = 0.004653
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 995.941651 B = 5500.149492 C = 6016.485119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.591 5.591
3 C 0.243 3.757
4 C -0.529 4.529
5 H 0.057 0.943
6 C 0.062 3.938
7 N -0.893 5.893
8 Si 0.899 3.101
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.275 1.275
12 C 0.554 3.446
13 O -0.541 6.541
14 C -0.189 4.189
15 C -0.030 4.030
16 C -0.105 4.105
17 Cl -0.084 7.084
18 C -0.047 4.047
19 C -0.198 4.198
20 C 0.270 3.730
21 N -0.855 5.855
22 H 0.045 0.955
23 H 0.076 0.924
24 H 0.059 0.941
25 H 0.034 0.966
26 H 0.046 0.954
27 H 0.264 0.736
28 H 0.136 0.864
29 H 0.131 0.869
30 H 0.132 0.868
31 H 0.398 0.602
32 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.866 -15.358 0.115 17.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.322 5.322
3 C 0.124 3.876
4 C -0.567 4.567
5 H 0.075 0.925
6 C -0.140 4.140
7 N -0.531 5.531
8 Si 0.726 3.274
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.200 1.200
12 C 0.341 3.659
13 O -0.419 6.419
14 C -0.198 4.198
15 C -0.050 4.050
16 C -0.133 4.133
17 Cl -0.056 7.056
18 C -0.067 4.067
19 C -0.221 4.221
20 C 0.159 3.841
21 N -0.392 5.392
22 H 0.064 0.936
23 H 0.094 0.906
24 H 0.078 0.922
25 H 0.052 0.948
26 H 0.064 0.936
27 H 0.074 0.926
28 H 0.154 0.846
29 H 0.149 0.851
30 H 0.149 0.851
31 H 0.227 0.773
32 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -8.227 -15.135 0.297 17.229
hybrid contribution 0.232 0.446 -1.108 1.217
sum -7.995 -14.689 -0.811 16.744
Atomic orbital electron populations
1.21768 0.81227 1.03020 1.00277 1.48118 1.06371 1.07545 1.70149
1.19365 0.92738 0.77883 0.97630 1.21402 1.36697 1.06506 0.92144
0.92495 1.24933 0.95309 0.96351 0.97429 1.69931 1.38172 1.14292
1.30742 0.86494 0.77727 0.78602 0.84547 1.20595 1.21059 1.19981
1.17912 0.87056 0.83129 0.77822 1.90761 1.13380 1.87172 1.50632
1.19550 1.01900 0.97519 1.00838 1.20966 0.91827 0.95041 0.97137
1.20355 0.96962 0.97697 0.98307 1.98334 1.48982 1.95348 1.62918
1.20776 0.95509 0.97944 0.92442 1.20443 1.00081 0.97473 1.04152
1.17699 0.86927 0.91875 0.87640 1.42628 1.37331 1.20030 1.39177
0.93607 0.90569 0.92183 0.94771 0.93560 0.92638 0.84607 0.85099
0.85055 0.77348 0.75390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.34 9.13 59.85 0.55 1.89 16
2 N -0.59 -12.59 2.86 -184.23 -0.53 -13.11 16
3 C 0.24 6.28 5.17 -5.20 -0.03 6.25 16
4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16
5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16
6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
7 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16
8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16
9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
12 C 0.55 11.66 6.50 -12.52 -0.08 11.58 16
13 O -0.54 -13.33 15.40 5.27 0.08 -13.25 16
14 C -0.19 -3.17 4.77 -104.80 -0.50 -3.67 16
15 C -0.03 -0.43 7.68 -39.16 -0.30 -0.73 16
16 C -0.10 -1.32 6.31 -39.55 -0.25 -1.57 16
17 Cl -0.08 -0.97 28.94 -51.86 -1.50 -2.47 16
18 C -0.05 -0.53 9.81 -39.51 -0.39 -0.91 16
19 C -0.20 -2.30 9.88 -39.42 -0.39 -2.69 16
20 C 0.27 3.95 6.75 -83.59 -0.56 3.39 16
21 N -0.86 -11.92 8.90 32.55 0.29 -11.63 16
22 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16
23 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16
24 H 0.06 0.90 6.46 -51.93 -0.34 0.56 16
25 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16
26 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16
27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
28 H 0.14 1.87 6.67 -52.48 -0.35 1.52 16
29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16
30 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16
31 H 0.40 4.07 8.84 -40.82 -0.36 3.71 16
32 H 0.41 6.98 6.92 -40.82 -0.28 6.70 16
LS Contribution 292.85 15.07 4.41 4.41
Total: -1.00 -31.57 292.85 -7.21 -38.78
By element:
Atomic # 1 Polarization: 9.40 SS G_CDS: -3.31 Total: 6.09 kcal
Atomic # 6 Polarization: 2.59 SS G_CDS: -2.37 Total: 0.21 kcal
Atomic # 7 Polarization: -50.65 SS G_CDS: 0.50 Total: -50.15 kcal
Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -31.57 -7.21 -38.78 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000019833354.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.429 kcal
(2) G-P(sol) polarization free energy of solvation -31.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds