Wall clock time and date at job start Mon Mar 30 2020 05:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47450 * 2 1 4 4 N 1.46909 * 109.47309 * 119.99927 * 2 1 3 5 5 C 1.46896 * 110.99696 * 275.00045 * 4 2 1 6 6 C 1.50697 * 109.46858 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00425 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99959 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00050 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.46989 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00210 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99756 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00334 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99822 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47350 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47541 * 119.99840 * 14 12 10 17 17 H 1.48502 * 109.46829 * 239.99737 * 14 12 10 18 18 C 1.50707 * 109.47291 * 239.99740 * 2 1 3 19 19 C 1.33388 * 125.19940 * 100.00009 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 279.97535 * 18 2 1 23 23 H 1.09001 * 109.46788 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47125 * 300.00152 * 1 2 3 25 25 H 1.08995 * 109.47145 * 60.00416 * 1 2 3 26 26 H 1.00901 * 110.99628 * 38.95403 * 4 2 1 27 27 H 1.08996 * 109.47089 * 299.99943 * 5 4 2 28 28 H 1.09003 * 109.47282 * 59.99880 * 5 4 2 29 29 H 0.97000 * 120.00111 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46738 * 299.99831 * 9 8 6 31 31 H 1.09003 * 109.47237 * 59.99932 * 9 8 6 32 32 H 0.97001 * 120.00643 * 179.97438 * 13 12 10 33 33 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 34 34 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 35 35 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5874 -0.5217 3.5560 7 8 2.8678 -1.6986 3.4703 8 7 2.7283 0.1206 4.7325 9 6 3.2197 -0.6029 5.9078 10 6 3.2839 0.3359 7.0848 11 1 2.9887 1.3683 6.9690 12 6 3.7206 -0.1230 8.3096 13 7 4.0806 -1.3800 8.4506 14 14 3.7996 1.0405 9.7688 15 1 3.3433 2.3904 9.3509 16 1 2.9210 0.5344 10.8537 17 1 5.1981 1.1218 10.2619 18 6 2.0324 -0.7105 -1.2305 19 6 2.4671 -0.1118 -2.3403 20 6 2.8813 -0.9718 -3.3430 21 6 2.7823 -2.2688 -3.0474 22 16 2.1356 -2.4557 -1.4224 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.4496 -1.4979 1.4101 27 1 2.7588 1.0462 2.1181 28 1 1.0870 0.6164 2.5525 29 1 2.5044 1.0619 4.8010 30 1 2.5430 -1.4262 6.1367 31 1 4.2149 -0.9969 5.7020 32 1 4.3882 -1.7027 9.3120 33 1 2.4937 0.9624 -2.4488 34 1 3.2561 -0.6193 -4.2925 35 1 3.0614 -3.0799 -3.7035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035141877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:42 Heat of formation + Delta-G solvation = -8.916608 kcal Electronic energy + Delta-G solvation = -17280.248921 eV Core-core repulsion = 14404.652453 eV Total energy + Delta-G solvation = -2875.596467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06076 -38.14516 -36.27365 -34.14296 -32.34186 -31.40153 -28.56701 -27.69652 -25.69747 -24.13888 -22.39074 -21.65780 -19.86274 -19.24731 -17.72609 -16.72564 -15.93987 -15.64873 -15.44688 -15.10801 -14.57342 -14.34824 -13.97319 -13.64504 -13.31125 -12.80734 -12.62547 -12.55362 -12.27445 -12.26181 -11.96452 -11.78269 -11.52849 -11.43688 -10.95362 -10.90141 -10.65204 -10.32254 -9.38106 -9.07934 -8.77558 -8.73824 -8.47429 -8.39397 -7.86674 -6.16780 -4.23709 0.96871 1.63480 2.04180 2.67149 3.23156 3.30148 3.33115 3.38185 3.76558 4.29121 4.46003 4.60431 4.88573 4.98826 5.02111 5.19304 5.30270 5.33428 5.43534 5.45073 5.53098 5.59190 5.64966 5.86203 6.02148 6.22913 6.38540 6.82474 7.27114 7.33105 7.44932 7.52641 7.67333 7.97209 8.63413 8.78794 9.11723 9.43070 10.93469 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.045426 B = 0.003082 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.236337 B = 9082.772802 C = 9353.602997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.151 3.849 3 H 0.096 0.904 4 N -0.665 5.665 5 C 0.041 3.959 6 C 0.496 3.504 7 O -0.542 6.542 8 N -0.714 5.714 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.135 4.135 21 C -0.230 4.230 22 S 0.132 5.868 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.352 0.648 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.390 0.610 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 4.121 -21.381 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.039 3.961 3 H 0.114 0.886 4 N -0.298 5.298 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.420 6.420 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.269 4.269 19 C -0.180 4.180 20 C -0.166 4.166 21 C -0.366 4.366 22 S 0.396 5.604 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.173 0.827 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.222 0.778 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.228 1.936 -20.507 21.520 hybrid contribution -0.493 2.311 0.148 2.368 sum -6.722 4.248 -20.360 21.857 Atomic orbital electron populations 1.22547 0.95833 1.02876 1.02746 1.20001 0.92602 0.96968 0.86500 0.88559 1.60212 1.58020 1.09159 1.02399 1.21874 1.00906 0.96064 0.90328 1.20317 0.79487 0.87924 0.84293 1.90674 1.50579 1.16068 1.84667 1.46441 1.65520 1.13841 1.10542 1.19094 0.95027 0.92448 0.80465 1.21264 1.46006 0.96517 0.94330 0.91868 1.24960 0.94832 0.95332 0.98947 1.69981 1.42968 1.14344 1.24948 0.86363 0.77831 0.80669 0.82048 1.19645 1.20809 1.20787 1.24493 1.06730 0.96621 0.99102 1.20010 1.03750 1.00994 0.93277 1.20076 1.03495 0.92351 1.00656 1.25680 1.09958 1.00617 1.00385 1.84484 1.61818 1.04227 1.09853 0.91986 0.91757 0.91501 0.82729 0.88388 0.92563 0.77794 0.95610 0.95515 0.92490 0.84660 0.84725 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.14 37.16 0.34 -1.26 16 2 C 0.15 1.60 3.02 -68.86 -0.21 1.40 16 3 H 0.10 0.91 7.78 -51.93 -0.40 0.51 16 4 N -0.67 -9.12 5.63 -109.22 -0.62 -9.74 16 5 C 0.04 0.56 5.97 -4.98 -0.03 0.53 16 6 C 0.50 9.78 7.87 -10.98 -0.09 9.69 16 7 O -0.54 -13.10 16.20 5.56 0.09 -13.01 16 8 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 9 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 10 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 11 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.88 -26.17 13.29 55.43 0.74 -25.43 16 14 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.15 -1.70 5.46 -36.00 -0.20 -1.90 16 19 C -0.15 -1.53 10.04 -41.20 -0.41 -1.94 16 20 C -0.13 -1.30 10.18 -41.20 -0.42 -1.72 16 21 C -0.23 -2.30 11.23 29.04 0.33 -1.98 16 22 S 0.13 1.53 23.07 -107.50 -2.48 -0.95 16 23 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.35 5.10 8.17 -39.29 -0.32 4.77 16 27 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -32.54 317.50 -8.73 -41.27 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.75 Total: 6.42 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.13 Total: -3.95 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.22 Total: -50.36 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.48 Total: -0.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.54 -8.73 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035141877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.355 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds