Wall clock time and date at job start Mon Mar 30 2020 04:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48509 * 109.46774 * 269.99555 * 3 2 1 5 5 H 1.48494 * 109.47221 * 29.99492 * 3 2 1 6 6 H 1.48503 * 109.47478 * 149.99997 * 3 2 1 7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 186.77278 * 7 2 1 9 9 C 1.50697 * 119.99908 * 6.77252 * 7 2 1 10 10 H 1.09005 * 109.47442 * 329.24550 * 9 7 2 11 11 S 1.81397 * 109.47177 * 209.24628 * 9 7 2 12 12 C 1.81399 * 103.00249 * 65.00149 * 11 9 7 13 13 C 1.52993 * 109.47339 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47543 * 304.99829 * 13 12 11 15 15 O 1.42900 * 109.47409 * 65.00149 * 13 12 11 16 16 C 1.53002 * 109.46961 * 185.00104 * 13 12 11 17 17 O 1.42902 * 109.47019 * 175.00447 * 16 13 12 18 18 C 1.50708 * 109.47065 * 89.24795 * 9 7 2 19 19 C 1.38229 * 119.99758 * 61.08789 * 18 9 7 20 20 C 1.38238 * 119.99609 * 179.81217 * 19 18 9 21 21 C 1.38238 * 120.00003 * 0.39695 * 20 19 18 22 22 C 1.38239 * 119.99871 * 359.85532 * 21 20 19 23 23 C 1.38235 * 120.00120 * 359.95895 * 22 21 20 24 24 H 0.97003 * 119.99453 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46874 * 59.99735 * 12 11 9 26 26 H 1.09002 * 109.47110 * 300.00510 * 12 11 9 27 27 H 0.96701 * 113.99993 * 59.99213 * 15 13 12 28 28 H 1.09000 * 109.46929 * 294.99675 * 16 13 12 29 29 H 1.08997 * 109.47775 * 54.99845 * 16 13 12 30 30 H 0.96703 * 114.00398 * 180.02562 * 17 16 13 31 31 H 1.07994 * 120.00490 * 359.97438 * 19 18 9 32 32 H 1.07996 * 120.00086 * 180.23237 * 20 19 18 33 33 H 1.08004 * 119.99851 * 179.83738 * 21 20 19 34 34 H 1.07996 * 119.99768 * 179.97438 * 22 21 20 35 35 H 1.07990 * 119.99879 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1108 9 6 1.2589 -2.4947 -0.1528 10 1 0.2633 -2.3959 0.2798 11 16 2.1621 -3.8141 0.7038 12 6 2.0707 -3.3085 2.4434 13 6 2.7984 -4.3363 3.3122 14 1 2.3853 -5.3275 3.1256 15 8 4.1906 -4.3321 2.9901 16 6 2.6154 -3.9773 4.7883 17 8 3.1950 -4.9987 5.6023 18 6 1.1393 -2.8357 -1.6159 19 6 2.2777 -3.0335 -2.3747 20 6 2.1679 -3.3502 -3.7158 21 6 0.9200 -3.4609 -4.3000 22 6 -0.2183 -3.2579 -3.5423 23 6 -0.1087 -2.9450 -2.2003 24 1 -0.4849 0.8401 -0.0004 25 1 1.0264 -3.2484 2.7499 26 1 2.5412 -2.3325 2.5634 27 1 4.6246 -3.4797 3.1323 28 1 3.1064 -3.0262 4.9944 29 1 1.5521 -3.8934 5.0128 30 1 3.1155 -4.8371 6.5524 31 1 3.2527 -2.9433 -1.9192 32 1 3.0572 -3.5084 -4.3078 33 1 0.8343 -3.7057 -5.3484 34 1 -1.1933 -3.3440 -3.9988 35 1 -0.9979 -2.7861 -1.6085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093957865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:43 Heat of formation + Delta-G solvation = -89.138774 kcal Electronic energy + Delta-G solvation = -17890.920523 eV Core-core repulsion = 14979.552610 eV Total energy + Delta-G solvation = -2911.367913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.32734 -37.96883 -35.68064 -33.74702 -31.13832 -30.98927 -30.05063 -27.30872 -25.91370 -23.48685 -21.69245 -21.58387 -20.31308 -17.47074 -16.70147 -16.48220 -16.00669 -15.83494 -15.15634 -14.55655 -14.37130 -14.16906 -13.80188 -13.59099 -12.85341 -12.69612 -12.63443 -12.19493 -12.12151 -11.76157 -11.58090 -11.10639 -11.07838 -10.76782 -10.38956 -10.33398 -10.23804 -10.12274 -9.81483 -9.55810 -8.80701 -8.71173 -8.08087 -7.68473 -6.71910 -6.21793 -4.34919 2.11490 2.25178 2.83373 3.15747 3.23671 3.25361 3.79635 4.19474 4.22711 4.67262 4.79079 5.04173 5.09977 5.19278 5.42257 5.50726 5.62591 5.63199 5.71102 5.81116 6.09720 6.12709 6.37135 6.38097 6.45982 6.75749 6.85927 7.07282 7.26923 7.33635 7.54745 7.60538 7.68726 7.81907 7.92863 7.96161 8.69144 9.25955 10.74802 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.006706 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.582031 B = 4174.176900 C = 5388.989875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.070 0.930 9 C 0.124 3.876 10 H 0.077 0.923 11 S -0.300 6.300 12 C -0.103 4.103 13 C 0.127 3.873 14 H 0.106 0.894 15 O -0.544 6.544 16 C 0.048 3.952 17 O -0.565 6.565 18 C -0.015 4.015 19 C -0.102 4.102 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.129 4.129 23 C -0.109 4.109 24 H 0.267 0.733 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.371 0.629 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.375 0.625 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -4.184 3.964 5.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.088 0.912 9 C -0.003 4.003 10 H 0.095 0.905 11 S -0.067 6.067 12 C -0.252 4.252 13 C 0.067 3.933 14 H 0.124 0.876 15 O -0.348 6.348 16 C -0.032 4.032 17 O -0.370 6.370 18 C -0.018 4.018 19 C -0.121 4.121 20 C -0.150 4.150 21 C -0.166 4.166 22 C -0.148 4.148 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.217 0.783 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.221 0.779 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.867 -5.886 2.851 6.801 hybrid contribution -0.419 3.161 1.073 3.365 sum 1.448 -2.725 3.925 4.992 Atomic orbital electron populations 1.69904 1.06097 1.27461 1.47866 1.25061 0.94934 0.99465 0.93893 0.86507 0.79904 0.82649 0.78625 1.20193 1.21091 1.19536 1.21201 0.93993 0.88880 1.50840 0.91193 1.19920 0.98877 0.92183 0.89322 0.90510 1.86328 1.77913 1.39562 1.02915 1.23683 1.03429 1.01906 0.96171 1.21614 0.82529 0.99947 0.89226 0.87605 1.86634 1.20944 1.37651 1.89564 1.22975 0.97435 0.90469 0.92340 1.86554 1.82147 1.47719 1.20545 1.20018 0.92330 0.92857 0.96597 1.20997 0.98933 0.98884 0.93268 1.20991 0.96811 1.01883 0.95311 1.20857 0.92994 1.03842 0.98875 1.20954 0.97665 1.01685 0.94467 1.20992 0.97426 0.99776 0.94650 0.92359 0.90223 0.89409 0.78264 0.93180 0.92665 0.77904 0.86249 0.87307 0.87508 0.87325 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.37 12.85 55.43 0.71 -22.66 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.51 -12.89 7.60 -34.44 -0.26 -13.15 16 8 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 9 C 0.12 2.94 2.48 -29.03 -0.07 2.87 16 10 H 0.08 1.99 7.12 -51.92 -0.37 1.62 16 11 S -0.30 -6.37 20.49 -107.50 -2.20 -8.57 16 12 C -0.10 -1.83 5.39 37.15 0.20 -1.63 16 13 C 0.13 1.99 3.24 -26.73 -0.09 1.90 16 14 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 15 O -0.54 -9.06 13.06 -40.09 -0.52 -9.58 16 16 C 0.05 0.59 6.68 37.16 0.25 0.84 16 17 O -0.56 -7.09 13.62 -40.09 -0.55 -7.64 16 18 C -0.02 -0.34 4.77 -104.62 -0.50 -0.84 16 19 C -0.10 -2.17 8.88 -39.58 -0.35 -2.52 16 20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16 22 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 23 C -0.11 -2.32 9.67 -39.58 -0.38 -2.71 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 26 H 0.09 1.61 8.00 -51.92 -0.42 1.19 16 27 H 0.37 4.97 9.05 45.56 0.41 5.38 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.37 2.74 9.12 45.56 0.42 3.16 16 31 H 0.12 2.57 8.04 -52.49 -0.42 2.15 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 2.46 7.95 -52.49 -0.42 2.04 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -29.77 317.33 -8.60 -38.36 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -3.30 Total: 12.31 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.50 Total: -22.13 kcal Atomic # 7 Polarization: -23.37 SS G_CDS: 0.71 Total: -22.66 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.07 Total: -17.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -2.20 Total: -8.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.77 -8.60 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093957865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.775 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds