Wall clock time and date at job start Mon Mar 30 2020 04:31:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00257 * 2 1
4 4 H 1.48509 * 109.46774 * 269.99555 * 3 2 1
5 5 H 1.48494 * 109.47221 * 29.99492 * 3 2 1
6 6 H 1.48503 * 109.47478 * 149.99997 * 3 2 1
7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00212 * 186.77278 * 7 2 1
9 9 C 1.50697 * 119.99908 * 6.77252 * 7 2 1
10 10 H 1.09005 * 109.47442 * 329.24550 * 9 7 2
11 11 S 1.81397 * 109.47177 * 209.24628 * 9 7 2
12 12 C 1.81399 * 103.00249 * 65.00149 * 11 9 7
13 13 C 1.52993 * 109.47339 * 179.97438 * 12 11 9
14 14 H 1.08994 * 109.47543 * 304.99829 * 13 12 11
15 15 O 1.42900 * 109.47409 * 65.00149 * 13 12 11
16 16 C 1.53002 * 109.46961 * 185.00104 * 13 12 11
17 17 O 1.42902 * 109.47019 * 175.00447 * 16 13 12
18 18 C 1.50708 * 109.47065 * 89.24795 * 9 7 2
19 19 C 1.38229 * 119.99758 * 61.08789 * 18 9 7
20 20 C 1.38238 * 119.99609 * 179.81217 * 19 18 9
21 21 C 1.38238 * 120.00003 * 0.39695 * 20 19 18
22 22 C 1.38239 * 119.99871 * 359.85532 * 21 20 19
23 23 C 1.38235 * 120.00120 * 359.95895 * 22 21 20
24 24 H 0.97003 * 119.99453 * 0.02562 * 1 2 3
25 25 H 1.09002 * 109.46874 * 59.99735 * 12 11 9
26 26 H 1.09002 * 109.47110 * 300.00510 * 12 11 9
27 27 H 0.96701 * 113.99993 * 59.99213 * 15 13 12
28 28 H 1.09000 * 109.46929 * 294.99675 * 16 13 12
29 29 H 1.08997 * 109.47775 * 54.99845 * 16 13 12
30 30 H 0.96703 * 114.00398 * 180.02562 * 17 16 13
31 31 H 1.07994 * 120.00490 * 359.97438 * 19 18 9
32 32 H 1.07996 * 120.00086 * 180.23237 * 20 19 18
33 33 H 1.08004 * 119.99851 * 179.83738 * 21 20 19
34 34 H 1.07996 * 119.99768 * 179.97438 * 22 21 20
35 35 H 1.07990 * 119.99879 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0462 -1.4002
5 1 1.4467 2.6527 0.6999
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0789 -1.1973 0.1108
9 6 1.2589 -2.4947 -0.1528
10 1 0.2633 -2.3959 0.2798
11 16 2.1621 -3.8141 0.7038
12 6 2.0707 -3.3085 2.4434
13 6 2.7984 -4.3363 3.3122
14 1 2.3853 -5.3275 3.1256
15 8 4.1906 -4.3321 2.9901
16 6 2.6154 -3.9773 4.7883
17 8 3.1950 -4.9987 5.6023
18 6 1.1393 -2.8357 -1.6159
19 6 2.2777 -3.0335 -2.3747
20 6 2.1679 -3.3502 -3.7158
21 6 0.9200 -3.4609 -4.3000
22 6 -0.2183 -3.2579 -3.5423
23 6 -0.1087 -2.9450 -2.2003
24 1 -0.4849 0.8401 -0.0004
25 1 1.0264 -3.2484 2.7499
26 1 2.5412 -2.3325 2.5634
27 1 4.6246 -3.4797 3.1323
28 1 3.1064 -3.0262 4.9944
29 1 1.5521 -3.8934 5.0128
30 1 3.1155 -4.8371 6.5524
31 1 3.2527 -2.9433 -1.9192
32 1 3.0572 -3.5084 -4.3078
33 1 0.8343 -3.7057 -5.3484
34 1 -1.1933 -3.3440 -3.9988
35 1 -0.9979 -2.7861 -1.6085
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000093957865.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:43
Heat of formation + Delta-G solvation = -89.138774 kcal
Electronic energy + Delta-G solvation = -17890.920523 eV
Core-core repulsion = 14979.552610 eV
Total energy + Delta-G solvation = -2911.367913 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.092 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-38.32734 -37.96883 -35.68064 -33.74702 -31.13832 -30.98927 -30.05063 -27.30872
-25.91370 -23.48685 -21.69245 -21.58387 -20.31308 -17.47074 -16.70147 -16.48220
-16.00669 -15.83494 -15.15634 -14.55655 -14.37130 -14.16906 -13.80188 -13.59099
-12.85341 -12.69612 -12.63443 -12.19493 -12.12151 -11.76157 -11.58090 -11.10639
-11.07838 -10.76782 -10.38956 -10.33398 -10.23804 -10.12274 -9.81483 -9.55810
-8.80701 -8.71173 -8.08087 -7.68473 -6.71910 -6.21793 -4.34919 2.11490
2.25178 2.83373 3.15747 3.23671 3.25361 3.79635 4.19474 4.22711
4.67262 4.79079 5.04173 5.09977 5.19278 5.42257 5.50726 5.62591
5.63199 5.71102 5.81116 6.09720 6.12709 6.37135 6.38097 6.45982
6.75749 6.85927 7.07282 7.26923 7.33635 7.54745 7.60538 7.68726
7.81907 7.92863 7.96161 8.69144 9.25955 10.74802
Molecular weight = 268.09amu
Principal moments of inertia in cm(-1)
A = 0.014925 B = 0.006706 C = 0.005195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1875.582031 B = 4174.176900 C = 5388.989875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.073 3.927
3 Si 0.896 3.104
4 H -0.276 1.276
5 H -0.285 1.285
6 H -0.271 1.271
7 C -0.509 4.509
8 H 0.070 0.930
9 C 0.124 3.876
10 H 0.077 0.923
11 S -0.300 6.300
12 C -0.103 4.103
13 C 0.127 3.873
14 H 0.106 0.894
15 O -0.544 6.544
16 C 0.048 3.952
17 O -0.565 6.565
18 C -0.015 4.015
19 C -0.102 4.102
20 C -0.132 4.132
21 C -0.147 4.147
22 C -0.129 4.129
23 C -0.109 4.109
24 H 0.267 0.733
25 H 0.079 0.921
26 H 0.087 0.913
27 H 0.371 0.629
28 H 0.050 0.950
29 H 0.055 0.945
30 H 0.375 0.625
31 H 0.120 0.880
32 H 0.109 0.891
33 H 0.107 0.893
34 H 0.109 0.891
35 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.527 -4.184 3.964 5.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.513 5.513
2 C -0.134 4.134
3 Si 0.723 3.277
4 H -0.202 1.202
5 H -0.211 1.211
6 H -0.195 1.195
7 C -0.549 4.549
8 H 0.088 0.912
9 C -0.003 4.003
10 H 0.095 0.905
11 S -0.067 6.067
12 C -0.252 4.252
13 C 0.067 3.933
14 H 0.124 0.876
15 O -0.348 6.348
16 C -0.032 4.032
17 O -0.370 6.370
18 C -0.018 4.018
19 C -0.121 4.121
20 C -0.150 4.150
21 C -0.166 4.166
22 C -0.148 4.148
23 C -0.128 4.128
24 H 0.076 0.924
25 H 0.098 0.902
26 H 0.106 0.894
27 H 0.217 0.783
28 H 0.068 0.932
29 H 0.073 0.927
30 H 0.221 0.779
31 H 0.138 0.862
32 H 0.127 0.873
33 H 0.125 0.875
34 H 0.127 0.873
35 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 1.867 -5.886 2.851 6.801
hybrid contribution -0.419 3.161 1.073 3.365
sum 1.448 -2.725 3.925 4.992
Atomic orbital electron populations
1.69904 1.06097 1.27461 1.47866 1.25061 0.94934 0.99465 0.93893
0.86507 0.79904 0.82649 0.78625 1.20193 1.21091 1.19536 1.21201
0.93993 0.88880 1.50840 0.91193 1.19920 0.98877 0.92183 0.89322
0.90510 1.86328 1.77913 1.39562 1.02915 1.23683 1.03429 1.01906
0.96171 1.21614 0.82529 0.99947 0.89226 0.87605 1.86634 1.20944
1.37651 1.89564 1.22975 0.97435 0.90469 0.92340 1.86554 1.82147
1.47719 1.20545 1.20018 0.92330 0.92857 0.96597 1.20997 0.98933
0.98884 0.93268 1.20991 0.96811 1.01883 0.95311 1.20857 0.92994
1.03842 0.98875 1.20954 0.97665 1.01685 0.94467 1.20992 0.97426
0.99776 0.94650 0.92359 0.90223 0.89409 0.78264 0.93180 0.92665
0.77904 0.86249 0.87307 0.87508 0.87325 0.86632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.37 12.85 55.43 0.71 -22.66 16
2 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16
3 Si 0.90 20.14 29.54 -169.99 -5.02 15.11 16
4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16
6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
7 C -0.51 -12.89 7.60 -34.44 -0.26 -13.15 16
8 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16
9 C 0.12 2.94 2.48 -29.03 -0.07 2.87 16
10 H 0.08 1.99 7.12 -51.92 -0.37 1.62 16
11 S -0.30 -6.37 20.49 -107.50 -2.20 -8.57 16
12 C -0.10 -1.83 5.39 37.15 0.20 -1.63 16
13 C 0.13 1.99 3.24 -26.73 -0.09 1.90 16
14 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16
15 O -0.54 -9.06 13.06 -40.09 -0.52 -9.58 16
16 C 0.05 0.59 6.68 37.16 0.25 0.84 16
17 O -0.56 -7.09 13.62 -40.09 -0.55 -7.64 16
18 C -0.02 -0.34 4.77 -104.62 -0.50 -0.84 16
19 C -0.10 -2.17 8.88 -39.58 -0.35 -2.52 16
20 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16
21 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16
22 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16
23 C -0.11 -2.32 9.67 -39.58 -0.38 -2.71 16
24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16
25 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16
26 H 0.09 1.61 8.00 -51.92 -0.42 1.19 16
27 H 0.37 4.97 9.05 45.56 0.41 5.38 16
28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.37 2.74 9.12 45.56 0.42 3.16 16
31 H 0.12 2.57 8.04 -52.49 -0.42 2.15 16
32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16
33 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16
34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16
35 H 0.12 2.46 7.95 -52.49 -0.42 2.04 16
LS Contribution 317.33 15.07 4.78 4.78
Total: -1.00 -29.77 317.33 -8.60 -38.36
By element:
Atomic # 1 Polarization: 15.61 SS G_CDS: -3.30 Total: 12.31 kcal
Atomic # 6 Polarization: -19.63 SS G_CDS: -2.50 Total: -22.13 kcal
Atomic # 7 Polarization: -23.37 SS G_CDS: 0.71 Total: -22.66 kcal
Atomic # 8 Polarization: -16.15 SS G_CDS: -1.07 Total: -17.22 kcal
Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal
Atomic # 16 Polarization: -6.37 SS G_CDS: -2.20 Total: -8.57 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -29.77 -8.60 -38.36 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093957865.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.775 kcal
(2) G-P(sol) polarization free energy of solvation -29.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds