Wall clock time and date at job start Mon Mar 30 2020 04:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48509 * 109.46774 * 269.99555 * 3 2 1 5 5 H 1.48494 * 109.47221 * 29.99492 * 3 2 1 6 6 H 1.48503 * 109.47478 * 149.99997 * 3 2 1 7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 186.77278 * 7 2 1 9 9 C 1.50697 * 119.99908 * 6.77252 * 7 2 1 10 10 H 1.09005 * 109.47442 * 329.24550 * 9 7 2 11 11 S 1.81397 * 109.47177 * 209.24628 * 9 7 2 12 12 C 1.81399 * 103.00249 * 65.00149 * 11 9 7 13 13 C 1.52993 * 109.47339 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.47543 * 304.99829 * 13 12 11 15 15 O 1.42900 * 109.47409 * 65.00149 * 13 12 11 16 16 C 1.53002 * 109.46961 * 185.00104 * 13 12 11 17 17 O 1.42902 * 109.47019 * 175.00447 * 16 13 12 18 18 C 1.50708 * 109.47065 * 89.24795 * 9 7 2 19 19 C 1.38229 * 119.99758 * 61.08789 * 18 9 7 20 20 C 1.38238 * 119.99609 * 179.81217 * 19 18 9 21 21 C 1.38238 * 120.00003 * 0.39695 * 20 19 18 22 22 C 1.38239 * 119.99871 * 359.85532 * 21 20 19 23 23 C 1.38235 * 120.00120 * 359.95895 * 22 21 20 24 24 H 0.97003 * 119.99453 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46874 * 59.99735 * 12 11 9 26 26 H 1.09002 * 109.47110 * 300.00510 * 12 11 9 27 27 H 0.96701 * 113.99993 * 59.99213 * 15 13 12 28 28 H 1.09000 * 109.46929 * 294.99675 * 16 13 12 29 29 H 1.08997 * 109.47775 * 54.99845 * 16 13 12 30 30 H 0.96703 * 114.00398 * 180.02562 * 17 16 13 31 31 H 1.07994 * 120.00490 * 359.97438 * 19 18 9 32 32 H 1.07996 * 120.00086 * 180.23237 * 20 19 18 33 33 H 1.08004 * 119.99851 * 179.83738 * 21 20 19 34 34 H 1.07996 * 119.99768 * 179.97438 * 22 21 20 35 35 H 1.07990 * 119.99879 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1108 9 6 1.2589 -2.4947 -0.1528 10 1 0.2633 -2.3959 0.2798 11 16 2.1621 -3.8141 0.7038 12 6 2.0707 -3.3085 2.4434 13 6 2.7984 -4.3363 3.3122 14 1 2.3853 -5.3275 3.1256 15 8 4.1906 -4.3321 2.9901 16 6 2.6154 -3.9773 4.7883 17 8 3.1950 -4.9987 5.6023 18 6 1.1393 -2.8357 -1.6159 19 6 2.2777 -3.0335 -2.3747 20 6 2.1679 -3.3502 -3.7158 21 6 0.9200 -3.4609 -4.3000 22 6 -0.2183 -3.2579 -3.5423 23 6 -0.1087 -2.9450 -2.2003 24 1 -0.4849 0.8401 -0.0004 25 1 1.0264 -3.2484 2.7499 26 1 2.5412 -2.3325 2.5634 27 1 4.6246 -3.4797 3.1323 28 1 3.1064 -3.0262 4.9944 29 1 1.5521 -3.8934 5.0128 30 1 3.1155 -4.8371 6.5524 31 1 3.2527 -2.9433 -1.9192 32 1 3.0572 -3.5084 -4.3078 33 1 0.8343 -3.7057 -5.3484 34 1 -1.1933 -3.3440 -3.9988 35 1 -0.9979 -2.7861 -1.6085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093957865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:43 Heat of formation + Delta-G solvation = -109.831589 kcal Electronic energy + Delta-G solvation = -17891.817831 eV Core-core repulsion = 14979.552610 eV Total energy + Delta-G solvation = -2912.265220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.88262 -39.13296 -36.76441 -35.59660 -32.87444 -32.31864 -31.58744 -29.05535 -27.13373 -25.32984 -23.24212 -22.85130 -21.89740 -18.60836 -18.53051 -17.75772 -17.40377 -17.12393 -16.92749 -16.16022 -15.87285 -15.71618 -15.27657 -14.81879 -14.52309 -14.18227 -13.86453 -13.74042 -13.68071 -13.39822 -13.20379 -12.88263 -12.69598 -12.30287 -12.01301 -11.90829 -11.76500 -11.45548 -11.08000 -10.95915 -10.70138 -10.50742 -9.62715 -9.29201 -8.52990 -8.08454 -6.34909 0.54953 0.69558 1.28112 1.36501 1.40051 1.48026 2.07826 2.36339 3.06633 3.15932 3.22258 3.49360 3.98335 4.04581 4.19974 4.24432 4.27174 4.33375 4.37757 4.48696 4.55080 4.70840 4.80931 4.90471 5.02899 5.04607 5.30656 5.38619 5.60926 5.74795 5.78198 5.90979 6.11905 6.34389 6.70627 6.78168 6.88716 7.27881 8.80290 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.006706 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.582031 B = 4174.176900 C = 5388.989875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.130 3.870 10 H 0.043 0.957 11 S -0.316 6.316 12 C -0.090 4.090 13 C 0.133 3.867 14 H 0.092 0.908 15 O -0.562 6.562 16 C 0.057 3.943 17 O -0.584 6.584 18 C -0.044 4.044 19 C -0.121 4.121 20 C -0.129 4.129 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.132 4.132 24 H 0.266 0.734 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.384 0.616 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.399 0.601 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -4.241 3.333 5.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.003 3.997 10 H 0.061 0.939 11 S -0.084 6.084 12 C -0.239 4.239 13 C 0.072 3.928 14 H 0.110 0.890 15 O -0.368 6.368 16 C -0.023 4.023 17 O -0.393 6.393 18 C -0.046 4.046 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.144 4.144 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.232 0.768 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.249 0.751 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.490 -5.939 2.244 6.820 hybrid contribution -0.598 3.070 1.264 3.373 sum 1.892 -2.870 3.508 4.911 Atomic orbital electron populations 1.70015 1.07216 1.27925 1.49226 1.25707 0.95586 1.02164 0.93807 0.85633 0.79074 0.79267 0.78298 1.20548 1.20613 1.18739 1.21282 0.93502 0.89893 1.50734 0.92127 1.19703 0.96961 0.92493 0.90581 0.93870 1.86274 1.77407 1.38943 1.05750 1.23725 1.03959 1.02342 0.93885 1.21523 0.81735 0.98363 0.91184 0.88995 1.86589 1.21397 1.38907 1.89925 1.22780 0.98644 0.90940 0.89914 1.86481 1.82252 1.47964 1.22575 1.20052 0.93572 0.94889 0.96127 1.21018 0.97878 1.00428 0.94762 1.21376 0.98797 1.00239 0.94249 1.21340 0.91922 1.01697 1.00720 1.21324 0.99820 1.00092 0.93205 1.21064 0.96510 1.01407 0.96258 0.92462 0.90011 0.89933 0.76753 0.91446 0.91134 0.75129 0.87399 0.84093 0.83255 0.84215 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.62 12.85 21.45 0.28 -49.34 16 2 C 0.03 1.59 5.45 84.66 0.46 2.06 16 3 Si 0.95 41.61 29.54 68.60 2.03 43.63 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.51 -26.76 7.60 25.60 0.19 -26.57 16 8 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 9 C 0.13 6.43 2.48 29.10 0.07 6.50 16 10 H 0.04 2.37 7.12 -2.39 -0.02 2.36 16 11 S -0.32 -13.84 20.49 -56.49 -1.16 -15.00 16 12 C -0.09 -3.24 5.39 71.98 0.39 -2.85 16 13 C 0.13 4.07 3.24 30.59 0.10 4.17 16 14 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 15 O -0.56 -18.40 13.06 -144.33 -1.88 -20.29 16 16 C 0.06 1.31 6.68 71.98 0.48 1.79 16 17 O -0.58 -13.47 13.62 -144.33 -1.97 -15.44 16 18 C -0.04 -2.04 4.77 -19.86 -0.09 -2.14 16 19 C -0.12 -5.21 8.88 22.27 0.20 -5.01 16 20 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 21 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 22 C -0.13 -4.47 10.05 22.27 0.22 -4.24 16 23 C -0.13 -5.76 9.67 22.27 0.22 -5.55 16 24 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.08 3.05 8.00 -2.39 -0.02 3.03 16 27 H 0.38 9.99 9.05 -74.06 -0.67 9.32 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16 31 H 0.11 4.75 8.04 -2.91 -0.02 4.72 16 32 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.10 4.56 7.95 -2.92 -0.02 4.54 16 Total: -1.00 -65.24 317.33 -0.27 -65.51 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.25 Total: 31.26 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 2.69 Total: -40.34 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.28 Total: -49.34 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -3.85 Total: -35.73 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: -13.84 SS G_CDS: -1.16 Total: -15.00 kcal Total: -65.24 -0.27 -65.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093957865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.320 kcal (2) G-P(sol) polarization free energy of solvation -65.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds