Wall clock time and date at job start Mon Mar 30 2020 04:31:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00257 * 2 1
4 4 H 1.48509 * 109.46774 * 269.99555 * 3 2 1
5 5 H 1.48494 * 109.47221 * 29.99492 * 3 2 1
6 6 H 1.48503 * 109.47478 * 149.99997 * 3 2 1
7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00212 * 186.77278 * 7 2 1
9 9 C 1.50697 * 119.99908 * 6.77252 * 7 2 1
10 10 H 1.09005 * 109.47442 * 329.24550 * 9 7 2
11 11 S 1.81397 * 109.47177 * 209.24628 * 9 7 2
12 12 C 1.81399 * 103.00249 * 65.00149 * 11 9 7
13 13 C 1.52993 * 109.47339 * 179.97438 * 12 11 9
14 14 H 1.08994 * 109.47543 * 304.99829 * 13 12 11
15 15 O 1.42900 * 109.47409 * 65.00149 * 13 12 11
16 16 C 1.53002 * 109.46961 * 185.00104 * 13 12 11
17 17 O 1.42902 * 109.47019 * 175.00447 * 16 13 12
18 18 C 1.50708 * 109.47065 * 89.24795 * 9 7 2
19 19 C 1.38229 * 119.99758 * 61.08789 * 18 9 7
20 20 C 1.38238 * 119.99609 * 179.81217 * 19 18 9
21 21 C 1.38238 * 120.00003 * 0.39695 * 20 19 18
22 22 C 1.38239 * 119.99871 * 359.85532 * 21 20 19
23 23 C 1.38235 * 120.00120 * 359.95895 * 22 21 20
24 24 H 0.97003 * 119.99453 * 0.02562 * 1 2 3
25 25 H 1.09002 * 109.46874 * 59.99735 * 12 11 9
26 26 H 1.09002 * 109.47110 * 300.00510 * 12 11 9
27 27 H 0.96701 * 113.99993 * 59.99213 * 15 13 12
28 28 H 1.09000 * 109.46929 * 294.99675 * 16 13 12
29 29 H 1.08997 * 109.47775 * 54.99845 * 16 13 12
30 30 H 0.96703 * 114.00398 * 180.02562 * 17 16 13
31 31 H 1.07994 * 120.00490 * 359.97438 * 19 18 9
32 32 H 1.07996 * 120.00086 * 180.23237 * 20 19 18
33 33 H 1.08004 * 119.99851 * 179.83738 * 21 20 19
34 34 H 1.07996 * 119.99768 * 179.97438 * 22 21 20
35 35 H 1.07990 * 119.99879 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0462 -1.4002
5 1 1.4467 2.6527 0.6999
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0789 -1.1973 0.1108
9 6 1.2589 -2.4947 -0.1528
10 1 0.2633 -2.3959 0.2798
11 16 2.1621 -3.8141 0.7038
12 6 2.0707 -3.3085 2.4434
13 6 2.7984 -4.3363 3.3122
14 1 2.3853 -5.3275 3.1256
15 8 4.1906 -4.3321 2.9901
16 6 2.6154 -3.9773 4.7883
17 8 3.1950 -4.9987 5.6023
18 6 1.1393 -2.8357 -1.6159
19 6 2.2777 -3.0335 -2.3747
20 6 2.1679 -3.3502 -3.7158
21 6 0.9200 -3.4609 -4.3000
22 6 -0.2183 -3.2579 -3.5423
23 6 -0.1087 -2.9450 -2.2003
24 1 -0.4849 0.8401 -0.0004
25 1 1.0264 -3.2484 2.7499
26 1 2.5412 -2.3325 2.5634
27 1 4.6246 -3.4797 3.1323
28 1 3.1064 -3.0262 4.9944
29 1 1.5521 -3.8934 5.0128
30 1 3.1155 -4.8371 6.5524
31 1 3.2527 -2.9433 -1.9192
32 1 3.0572 -3.5084 -4.3078
33 1 0.8343 -3.7057 -5.3484
34 1 -1.1933 -3.3440 -3.9988
35 1 -0.9979 -2.7861 -1.6085
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000093957865.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:43
Heat of formation + Delta-G solvation = -109.831589 kcal
Electronic energy + Delta-G solvation = -17891.817831 eV
Core-core repulsion = 14979.552610 eV
Total energy + Delta-G solvation = -2912.265220 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.092 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.88262 -39.13296 -36.76441 -35.59660 -32.87444 -32.31864 -31.58744 -29.05535
-27.13373 -25.32984 -23.24212 -22.85130 -21.89740 -18.60836 -18.53051 -17.75772
-17.40377 -17.12393 -16.92749 -16.16022 -15.87285 -15.71618 -15.27657 -14.81879
-14.52309 -14.18227 -13.86453 -13.74042 -13.68071 -13.39822 -13.20379 -12.88263
-12.69598 -12.30287 -12.01301 -11.90829 -11.76500 -11.45548 -11.08000 -10.95915
-10.70138 -10.50742 -9.62715 -9.29201 -8.52990 -8.08454 -6.34909 0.54953
0.69558 1.28112 1.36501 1.40051 1.48026 2.07826 2.36339 3.06633
3.15932 3.22258 3.49360 3.98335 4.04581 4.19974 4.24432 4.27174
4.33375 4.37757 4.48696 4.55080 4.70840 4.80931 4.90471 5.02899
5.04607 5.30656 5.38619 5.60926 5.74795 5.78198 5.90979 6.11905
6.34389 6.70627 6.78168 6.88716 7.27881 8.80290
Molecular weight = 268.09amu
Principal moments of inertia in cm(-1)
A = 0.014925 B = 0.006706 C = 0.005195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1875.582031 B = 4174.176900 C = 5388.989875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.031 3.969
3 Si 0.952 3.048
4 H -0.280 1.280
5 H -0.281 1.281
6 H -0.263 1.263
7 C -0.514 4.514
8 H 0.061 0.939
9 C 0.130 3.870
10 H 0.043 0.957
11 S -0.316 6.316
12 C -0.090 4.090
13 C 0.133 3.867
14 H 0.092 0.908
15 O -0.562 6.562
16 C 0.057 3.943
17 O -0.584 6.584
18 C -0.044 4.044
19 C -0.121 4.121
20 C -0.129 4.129
21 C -0.139 4.139
22 C -0.126 4.126
23 C -0.132 4.132
24 H 0.266 0.734
25 H 0.081 0.919
26 H 0.082 0.918
27 H 0.384 0.616
28 H 0.067 0.933
29 H 0.071 0.929
30 H 0.399 0.601
31 H 0.108 0.892
32 H 0.141 0.859
33 H 0.150 0.850
34 H 0.140 0.860
35 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.139 -4.241 3.333 5.802
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.173 4.173
3 Si 0.777 3.223
4 H -0.205 1.205
5 H -0.206 1.206
6 H -0.187 1.187
7 C -0.554 4.554
8 H 0.079 0.921
9 C 0.003 3.997
10 H 0.061 0.939
11 S -0.084 6.084
12 C -0.239 4.239
13 C 0.072 3.928
14 H 0.110 0.890
15 O -0.368 6.368
16 C -0.023 4.023
17 O -0.393 6.393
18 C -0.046 4.046
19 C -0.141 4.141
20 C -0.147 4.147
21 C -0.157 4.157
22 C -0.144 4.144
23 C -0.152 4.152
24 H 0.075 0.925
25 H 0.100 0.900
26 H 0.101 0.899
27 H 0.232 0.768
28 H 0.086 0.914
29 H 0.089 0.911
30 H 0.249 0.751
31 H 0.126 0.874
32 H 0.159 0.841
33 H 0.167 0.833
34 H 0.158 0.842
35 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 2.490 -5.939 2.244 6.820
hybrid contribution -0.598 3.070 1.264 3.373
sum 1.892 -2.870 3.508 4.911
Atomic orbital electron populations
1.70015 1.07216 1.27925 1.49226 1.25707 0.95586 1.02164 0.93807
0.85633 0.79074 0.79267 0.78298 1.20548 1.20613 1.18739 1.21282
0.93502 0.89893 1.50734 0.92127 1.19703 0.96961 0.92493 0.90581
0.93870 1.86274 1.77407 1.38943 1.05750 1.23725 1.03959 1.02342
0.93885 1.21523 0.81735 0.98363 0.91184 0.88995 1.86589 1.21397
1.38907 1.89925 1.22780 0.98644 0.90940 0.89914 1.86481 1.82252
1.47964 1.22575 1.20052 0.93572 0.94889 0.96127 1.21018 0.97878
1.00428 0.94762 1.21376 0.98797 1.00239 0.94249 1.21340 0.91922
1.01697 1.00720 1.21324 0.99820 1.00092 0.93205 1.21064 0.96510
1.01407 0.96258 0.92462 0.90011 0.89933 0.76753 0.91446 0.91134
0.75129 0.87399 0.84093 0.83255 0.84215 0.88007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -49.62 12.85 21.45 0.28 -49.34 16
2 C 0.03 1.59 5.45 84.66 0.46 2.06 16
3 Si 0.95 41.61 29.54 68.60 2.03 43.63 16
4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16
5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
7 C -0.51 -26.76 7.60 25.60 0.19 -26.57 16
8 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16
9 C 0.13 6.43 2.48 29.10 0.07 6.50 16
10 H 0.04 2.37 7.12 -2.39 -0.02 2.36 16
11 S -0.32 -13.84 20.49 -56.49 -1.16 -15.00 16
12 C -0.09 -3.24 5.39 71.98 0.39 -2.85 16
13 C 0.13 4.07 3.24 30.59 0.10 4.17 16
14 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16
15 O -0.56 -18.40 13.06 -144.33 -1.88 -20.29 16
16 C 0.06 1.31 6.68 71.98 0.48 1.79 16
17 O -0.58 -13.47 13.62 -144.33 -1.97 -15.44 16
18 C -0.04 -2.04 4.77 -19.86 -0.09 -2.14 16
19 C -0.12 -5.21 8.88 22.27 0.20 -5.01 16
20 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16
21 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16
22 C -0.13 -4.47 10.05 22.27 0.22 -4.24 16
23 C -0.13 -5.76 9.67 22.27 0.22 -5.55 16
24 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16
25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16
26 H 0.08 3.05 8.00 -2.39 -0.02 3.03 16
27 H 0.38 9.99 9.05 -74.06 -0.67 9.32 16
28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
30 H 0.40 4.83 9.12 -74.06 -0.68 4.15 16
31 H 0.11 4.75 8.04 -2.91 -0.02 4.72 16
32 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16
33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16
34 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16
35 H 0.10 4.56 7.95 -2.92 -0.02 4.54 16
Total: -1.00 -65.24 317.33 -0.27 -65.51
By element:
Atomic # 1 Polarization: 31.51 SS G_CDS: -0.25 Total: 31.26 kcal
Atomic # 6 Polarization: -43.03 SS G_CDS: 2.69 Total: -40.34 kcal
Atomic # 7 Polarization: -49.62 SS G_CDS: 0.28 Total: -49.34 kcal
Atomic # 8 Polarization: -31.87 SS G_CDS: -3.85 Total: -35.73 kcal
Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal
Atomic # 16 Polarization: -13.84 SS G_CDS: -1.16 Total: -15.00 kcal
Total: -65.24 -0.27 -65.51 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093957865.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.320 kcal
(2) G-P(sol) polarization free energy of solvation -65.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.832 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds