Wall clock time and date at job start Mon Mar 30 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48501 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47257 * 300.00185 * 3 2 1 6 6 H 1.48493 * 109.47092 * 60.00334 * 3 2 1 7 7 C 1.37876 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00197 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47462 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00403 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00167 * 180.02562 * 11 10 9 14 14 O 1.42901 * 109.47022 * 179.97438 * 13 11 10 15 15 C 1.36068 * 117.00001 * 179.97438 * 14 13 11 16 16 C 1.39262 * 120.08494 * 90.00364 * 15 14 13 17 17 N 1.39966 * 120.07614 * 359.97438 * 16 15 14 18 18 C 1.38747 * 119.84762 * 179.70320 * 16 15 14 19 19 C 1.38244 * 120.01848 * 0.29523 * 18 16 15 20 20 C 1.38229 * 120.17208 * 359.95815 * 19 18 16 21 21 C 1.38496 * 120.15091 * 0.04484 * 20 19 18 22 22 F 1.35104 * 120.00314 * 179.97438 * 21 20 19 23 23 H 0.97005 * 120.00196 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47515 * 59.99773 * 9 7 2 25 25 H 1.09004 * 109.46794 * 299.99735 * 9 7 2 26 26 H 0.97000 * 119.99965 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47422 * 59.99797 * 13 11 10 28 28 H 1.09004 * 109.47163 * 299.99991 * 13 11 10 29 29 H 0.97001 * 120.00335 * 179.73188 * 17 16 15 30 30 H 0.97005 * 119.99941 * 359.45116 * 17 16 15 31 31 H 1.08000 * 119.98981 * 180.27400 * 18 16 15 32 32 H 1.07998 * 119.91371 * 179.97438 * 19 18 16 33 33 H 1.07997 * 119.91877 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5614 -5.1050 -0.0035 13 6 2.7331 -6.0288 -0.0038 14 8 2.0186 -7.2663 -0.0038 15 6 2.7597 -8.4075 -0.0047 16 6 3.1406 -8.9935 1.1998 17 7 2.7625 -8.4096 2.4144 18 6 3.8910 -10.1605 1.1932 19 6 4.2643 -10.7359 -0.0071 20 6 3.8911 -10.1520 -1.2032 21 6 3.1421 -8.9871 -1.2048 22 9 2.7794 -8.4187 -2.3756 23 1 -0.4851 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 3.1567 -3.4354 -0.0029 27 1 3.3597 -5.9714 0.8863 28 1 3.3599 -5.9706 -0.8937 29 1 3.0251 -8.8208 3.2528 30 1 2.2412 -7.5915 2.4178 31 1 4.1839 -10.6193 2.1260 32 1 4.8488 -11.6440 -0.0104 33 1 4.1845 -10.6052 -2.1385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124091825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:17 Heat of formation + Delta-G solvation = -96.608223 kcal Electronic energy + Delta-G solvation = -19527.626143 eV Core-core repulsion = 16082.013906 eV Total energy + Delta-G solvation = -3445.612237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.89961 -40.11888 -38.77583 -37.07986 -34.55918 -34.20602 -32.38639 -30.33093 -29.10790 -28.23695 -26.38354 -22.91044 -22.63665 -22.29191 -19.89197 -18.26429 -17.82716 -17.53791 -17.36118 -15.95767 -15.67861 -15.48549 -15.36124 -15.28553 -15.10643 -14.83438 -14.40540 -13.65228 -13.59816 -13.05156 -12.85012 -12.54384 -12.20633 -12.01037 -11.77523 -11.61953 -10.98368 -10.92908 -10.81616 -10.34264 -10.03650 -9.41377 -9.09472 -8.79743 -8.77504 -7.94984 -7.83629 -6.19096 -4.26429 0.86853 1.18140 3.03880 3.22084 3.24978 3.29334 3.32314 3.48903 3.55125 4.15070 4.29209 4.46220 4.62768 4.83697 5.07150 5.11565 5.17065 5.26666 5.30697 5.42157 5.65388 5.76942 5.90566 6.14971 6.46533 6.98750 7.25051 7.34306 7.47786 7.48025 7.49436 7.64051 7.93208 8.54350 8.74037 9.01907 9.40090 10.91111 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.003486 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.014177 B = 8030.481858 C = 8227.357146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.709 5.709 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.040 3.960 14 O -0.292 6.292 15 C -0.022 4.022 16 C 0.233 3.767 17 N -0.864 5.864 18 C -0.204 4.204 19 C -0.046 4.046 20 C -0.207 4.207 21 C 0.134 3.866 22 F -0.128 7.128 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.391 0.609 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.402 0.598 30 H 0.408 0.592 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.775 -19.965 2.876 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.359 5.359 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.039 4.039 14 O -0.208 6.208 15 C -0.072 4.072 16 C 0.125 3.875 17 N -0.402 5.402 18 C -0.227 4.227 19 C -0.065 4.065 20 C -0.228 4.228 21 C 0.113 3.887 22 F -0.107 7.107 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.224 0.776 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.231 0.769 30 H 0.238 0.762 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.501 -19.925 2.818 22.698 hybrid contribution 0.952 1.320 0.093 1.630 sum 11.453 -18.605 2.910 22.041 Atomic orbital electron populations 1.69985 1.06121 1.27273 1.48794 1.24959 0.94928 0.99496 0.94655 0.86342 0.79797 0.82874 0.77779 1.19622 1.20756 1.20781 1.21246 0.93322 0.90330 1.53336 0.91774 1.19156 0.88208 0.81625 0.97960 1.46364 1.11315 1.05481 1.72773 1.19937 0.89202 0.83921 0.78608 1.90706 1.16418 1.84563 1.49304 1.22669 0.94730 0.84012 1.02462 1.86336 1.30264 1.10183 1.93974 1.18134 1.05972 0.92670 0.90382 1.17901 0.91483 0.92156 0.85913 1.42534 1.61852 1.31376 1.04420 1.20564 1.05867 0.97086 0.99192 1.20736 0.96494 0.98431 0.90823 1.20851 1.04878 0.97092 0.99997 1.17888 0.96547 0.93652 0.80587 1.91528 1.89593 1.84294 1.45237 0.92435 0.95335 0.95351 0.77633 0.90604 0.90311 0.76949 0.76221 0.85173 0.84847 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.66 5.43 -5.20 -0.03 6.64 16 10 N -0.71 -14.95 5.55 -61.48 -0.34 -15.29 16 11 C 0.50 10.36 7.91 -10.99 -0.09 10.27 16 12 O -0.53 -13.57 16.50 -14.36 -0.24 -13.81 16 13 C 0.04 0.62 6.54 36.00 0.24 0.86 16 14 O -0.29 -4.96 8.70 -39.87 -0.35 -5.30 16 15 C -0.02 -0.30 5.75 -39.05 -0.22 -0.53 16 16 C 0.23 2.57 6.77 -83.57 -0.57 2.01 16 17 N -0.86 -8.02 9.09 32.51 0.30 -7.72 16 18 C -0.20 -1.74 9.89 -39.39 -0.39 -2.13 16 19 C -0.05 -0.37 10.04 -39.58 -0.40 -0.77 16 20 C -0.21 -2.06 10.02 -39.49 -0.40 -2.46 16 21 C 0.13 1.78 7.30 -39.33 -0.29 1.49 16 22 F -0.13 -1.95 17.11 2.25 0.04 -1.91 16 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.39 6.91 8.32 -40.82 -0.34 6.58 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.40 2.50 8.85 -40.82 -0.36 2.14 16 30 H 0.41 4.35 8.19 -40.82 -0.33 4.02 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -34.09 303.48 -6.39 -40.48 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.53 Total: 6.55 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.56 Total: 2.03 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.69 Total: -48.32 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.58 Total: -19.12 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.09 -6.39 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124091825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.129 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds