Wall clock time and date at job start Mon Mar 30 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48501 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47257 * 300.00185 * 3 2 1 6 6 H 1.48493 * 109.47092 * 60.00334 * 3 2 1 7 7 C 1.37876 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00197 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47462 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00403 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99801 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00167 * 180.02562 * 11 10 9 14 14 O 1.42901 * 109.47022 * 179.97438 * 13 11 10 15 15 C 1.36068 * 117.00001 * 179.97438 * 14 13 11 16 16 C 1.39262 * 120.08494 * 90.00364 * 15 14 13 17 17 N 1.39966 * 120.07614 * 359.97438 * 16 15 14 18 18 C 1.38747 * 119.84762 * 179.70320 * 16 15 14 19 19 C 1.38244 * 120.01848 * 0.29523 * 18 16 15 20 20 C 1.38229 * 120.17208 * 359.95815 * 19 18 16 21 21 C 1.38496 * 120.15091 * 0.04484 * 20 19 18 22 22 F 1.35104 * 120.00314 * 179.97438 * 21 20 19 23 23 H 0.97005 * 120.00196 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47515 * 59.99773 * 9 7 2 25 25 H 1.09004 * 109.46794 * 299.99735 * 9 7 2 26 26 H 0.97000 * 119.99965 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47422 * 59.99797 * 13 11 10 28 28 H 1.09004 * 109.47163 * 299.99991 * 13 11 10 29 29 H 0.97001 * 120.00335 * 179.73188 * 17 16 15 30 30 H 0.97005 * 119.99941 * 359.45116 * 17 16 15 31 31 H 1.08000 * 119.98981 * 180.27400 * 18 16 15 32 32 H 1.07998 * 119.91371 * 179.97438 * 19 18 16 33 33 H 1.07997 * 119.91877 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6126 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5614 -5.1050 -0.0035 13 6 2.7331 -6.0288 -0.0038 14 8 2.0186 -7.2663 -0.0038 15 6 2.7597 -8.4075 -0.0047 16 6 3.1406 -8.9935 1.1998 17 7 2.7625 -8.4096 2.4144 18 6 3.8910 -10.1605 1.1932 19 6 4.2643 -10.7359 -0.0071 20 6 3.8911 -10.1520 -1.2032 21 6 3.1421 -8.9871 -1.2048 22 9 2.7794 -8.4187 -2.3756 23 1 -0.4851 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 3.1567 -3.4354 -0.0029 27 1 3.3597 -5.9714 0.8863 28 1 3.3599 -5.9706 -0.8937 29 1 3.0251 -8.8208 3.2528 30 1 2.2412 -7.5915 2.4178 31 1 4.1839 -10.6193 2.1260 32 1 4.8488 -11.6440 -0.0104 33 1 4.1845 -10.6052 -2.1385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124091825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:17 Heat of formation + Delta-G solvation = -122.362585 kcal Electronic energy + Delta-G solvation = -19528.742936 eV Core-core repulsion = 16082.013906 eV Total energy + Delta-G solvation = -3446.729030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.92146 -41.19763 -40.28586 -38.19982 -36.19709 -35.30587 -34.42468 -31.39302 -30.25172 -29.44691 -28.04894 -24.66497 -23.59066 -23.26176 -21.67844 -19.28190 -19.15615 -18.71106 -18.40389 -17.71469 -16.98779 -16.85027 -16.73307 -16.27597 -16.22367 -16.10270 -15.62820 -15.12134 -15.06659 -14.31289 -14.14696 -13.99650 -13.70912 -13.51346 -12.92504 -12.87359 -12.75611 -12.60011 -12.23356 -11.55144 -11.48628 -11.14000 -10.87597 -10.84512 -9.93874 -9.65626 -8.59671 -8.31024 -6.48186 0.03442 0.41145 1.42918 1.44386 1.56877 1.57787 1.84739 2.36824 2.61029 2.76665 3.02768 3.04099 3.41685 3.78173 3.95561 3.99215 4.03955 4.22157 4.43185 4.45324 4.84356 5.06029 5.09296 5.19018 5.19585 5.41164 5.45050 5.60642 5.74434 5.80395 6.14616 6.51282 6.61431 6.79417 6.85333 7.19636 7.36648 8.81510 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.003486 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.014177 B = 8030.481858 C = 8227.357146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.498 3.502 12 O -0.588 6.588 13 C 0.055 3.945 14 O -0.322 6.322 15 C -0.058 4.058 16 C 0.227 3.773 17 N -0.859 5.859 18 C -0.193 4.193 19 C -0.032 4.032 20 C -0.205 4.205 21 C 0.102 3.898 22 F -0.150 7.150 23 H 0.269 0.731 24 H -0.013 1.013 25 H -0.008 1.008 26 H 0.411 0.589 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.416 0.584 30 H 0.400 0.600 31 H 0.164 0.836 32 H 0.175 0.825 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.169 -21.306 3.789 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.284 3.716 12 O -0.468 6.468 13 C -0.023 4.023 14 O -0.238 6.238 15 C -0.108 4.108 16 C 0.118 3.882 17 N -0.397 5.397 18 C -0.216 4.216 19 C -0.050 4.050 20 C -0.226 4.226 21 C 0.082 3.918 22 F -0.129 7.129 23 H 0.078 0.922 24 H 0.005 0.995 25 H 0.010 0.990 26 H 0.247 0.753 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.248 0.752 30 H 0.228 0.772 31 H 0.182 0.818 32 H 0.193 0.807 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.961 -21.307 3.751 25.749 hybrid contribution -0.103 1.569 -0.158 1.580 sum 13.858 -19.739 3.593 24.384 Atomic orbital electron populations 1.70148 1.08343 1.28599 1.49881 1.26097 0.95793 1.04008 0.93785 0.85069 0.79097 0.77113 0.77670 1.17492 1.20562 1.20359 1.21634 0.94413 0.90305 1.53000 0.89527 1.18614 0.88639 0.84025 0.94357 1.46046 1.11539 1.04781 1.72725 1.20875 0.89413 0.84792 0.76484 1.90673 1.19259 1.85400 1.51496 1.22501 0.92774 0.82146 1.04878 1.86290 1.31944 1.11164 1.94404 1.18445 1.08221 0.92211 0.91900 1.18092 0.91789 0.92927 0.85353 1.42540 1.61396 1.31034 1.04746 1.21014 1.03979 0.95618 1.00977 1.21247 0.95192 0.98997 0.89590 1.21169 1.03714 0.95810 1.01889 1.18325 0.98418 0.95259 0.79785 1.91462 1.90144 1.84923 1.46388 0.92190 0.99485 0.99008 0.75255 0.87068 0.88528 0.75206 0.77156 0.81819 0.80727 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.99 42.23 29.54 68.60 2.03 44.26 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 14.83 5.43 85.63 0.46 15.29 16 10 N -0.70 -30.14 5.55 -466.80 -2.59 -32.73 16 11 C 0.50 21.32 7.91 87.66 0.69 22.01 16 12 O -0.59 -31.72 16.50 16.00 0.26 -31.46 16 13 C 0.05 1.70 6.54 71.24 0.47 2.16 16 14 O -0.32 -11.15 8.70 -75.28 -0.65 -11.80 16 15 C -0.06 -1.61 5.75 22.62 0.13 -1.48 16 16 C 0.23 4.56 6.77 38.21 0.26 4.81 16 17 N -0.86 -14.49 9.09 -51.07 -0.46 -14.96 16 18 C -0.19 -2.53 9.89 22.39 0.22 -2.31 16 19 C -0.03 -0.37 10.04 22.27 0.22 -0.15 16 20 C -0.21 -3.59 10.02 22.33 0.22 -3.36 16 21 C 0.10 2.68 7.30 22.43 0.16 2.84 16 22 F -0.15 -4.73 17.11 44.97 0.77 -3.96 16 23 H 0.27 15.19 8.31 -92.70 -0.77 14.41 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.41 14.25 8.32 -92.71 -0.77 13.48 16 27 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.42 4.17 8.85 -92.71 -0.82 3.35 16 30 H 0.40 8.29 8.19 -92.70 -0.76 7.53 16 31 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -79.15 303.48 2.01 -77.14 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -1.17 Total: 19.30 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 3.54 Total: 10.42 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -2.77 Total: -103.91 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -0.39 Total: -43.26 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.77 Total: -3.96 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -79.15 2.01 -77.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124091825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.221 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds