Wall clock time and date at job start Mon Mar 30 2020 05:18:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1
5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1
6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2
7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2
8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3
9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3
10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5
11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5
13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1
14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2
15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3
16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3
17 17 H 1.09000 * 109.47471 * 320.00595 * 16 14 13
18 18 N 1.46902 * 109.47386 * 199.99836 * 16 14 13
19 19 C 1.50704 * 109.46939 * 80.00539 * 16 14 13
20 20 C 1.33395 * 125.20060 * 259.71923 * 19 16 14
21 21 C 1.38427 * 114.91736 * 179.86292 * 20 19 16
22 22 C 1.33386 * 114.92195 * 0.42535 * 21 20 19
23 23 S 1.75880 * 109.59431 * 359.77461 * 22 21 20
24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5
30 30 H 0.97003 * 119.99976 * 95.00125 * 13 3 2
31 31 H 1.00895 * 110.99987 * 176.04536 * 18 16 14
32 32 H 1.00898 * 111.00336 * 300.00901 * 18 16 14
33 33 H 1.07997 * 122.54062 * 0.02562 * 20 19 16
34 34 H 1.08002 * 122.53406 * 180.20075 * 21 20 19
35 35 H 1.07995 * 125.19943 * 179.75343 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8417
5 6 3.5419 1.4443 -0.1239
6 1 4.1472 1.8889 0.6523
7 6 4.1433 0.8785 -1.2280
8 7 3.4062 0.3375 -2.1734
9 14 6.0049 0.8802 -1.3812
10 1 6.5966 0.1453 -0.2344
11 1 6.3978 0.2169 -2.6505
12 1 6.5005 2.2801 -1.3808
13 7 1.6524 2.0974 1.2518
14 6 0.4351 2.6643 1.3670
15 8 -0.3397 2.6319 0.4345
16 6 0.0363 3.3375 2.6549
17 1 0.3958 2.7491 3.4991
18 7 -1.4275 3.4430 2.7195
19 6 0.6420 4.7164 2.7095
20 6 1.7399 5.0475 3.3910
21 6 2.1102 6.3775 3.2898
22 6 1.3081 7.1283 2.5334
23 16 0.0052 6.1368 1.8907
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 1.8933 -0.5138 -0.8900
29 1 3.8292 -0.0609 -2.9500
30 1 2.2719 2.1231 1.9979
31 1 -1.7234 3.8324 3.6020
32 1 -1.7855 3.9844 1.9470
33 1 2.2991 4.3317 3.9751
34 1 2.9805 6.7777 3.7885
35 1 1.4385 8.1836 2.3448
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000134027141.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:15
Heat of formation + Delta-G solvation = -7.985217 kcal
Electronic energy + Delta-G solvation = -18539.037899 eV
Core-core repulsion = 15663.481820 eV
Total energy + Delta-G solvation = -2875.556079 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.37329 -37.68642 -35.32355 -34.16209 -32.34634 -30.87515 -29.34197 -27.18919
-25.43790 -23.49300 -22.67748 -20.25104 -19.45295 -19.25283 -17.79013 -17.00324
-16.14039 -15.57777 -15.38590 -14.51471 -14.43073 -14.32050 -13.65994 -13.15460
-12.89066 -12.75728 -12.61550 -12.41092 -11.97174 -11.69343 -11.39951 -11.21895
-10.98045 -10.80588 -10.73701 -10.31633 -10.13348 -9.59626 -9.48773 -9.03242
-8.78634 -8.52576 -8.45396 -8.42847 -7.78595 -6.10554 -4.19938 0.93675
1.58988 1.98413 2.70237 3.25795 3.31249 3.32176 3.39624 3.97928
4.36816 4.79026 4.81663 5.02311 5.20552 5.29147 5.46452 5.53024
5.56051 6.02901 6.22699 6.41486 6.45057 6.53107 6.72087 6.98511
7.10443 7.25060 7.39168 7.41923 7.49117 7.64504 7.76122 7.93047
8.20821 8.68604 8.79377 9.14895 9.47203 10.94725
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.019549 B = 0.006244 C = 0.005126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.922799 B = 4483.446210 C = 5460.848999
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.127 4.127
3 C 0.273 3.727
4 H 0.048 0.952
5 C -0.534 4.534
6 H 0.060 0.940
7 C 0.067 3.933
8 N -0.882 5.882
9 Si 0.900 3.100
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.277 1.277
13 N -0.703 5.703
14 C 0.513 3.487
15 O -0.533 6.533
16 C 0.143 3.857
17 H 0.112 0.888
18 N -0.818 5.818
19 C -0.208 4.208
20 C -0.128 4.128
21 C -0.132 4.132
22 C -0.218 4.218
23 S 0.113 5.887
24 H 0.042 0.958
25 H 0.022 0.978
26 H 0.048 0.952
27 H 0.031 0.969
28 H 0.098 0.902
29 H 0.265 0.735
30 H 0.387 0.613
31 H 0.345 0.655
32 H 0.351 0.649
33 H 0.142 0.858
34 H 0.139 0.861
35 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.140 9.872 11.792 15.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.166 4.166
3 C 0.171 3.829
4 H 0.066 0.934
5 C -0.572 4.572
6 H 0.078 0.922
7 C -0.136 4.136
8 N -0.519 5.519
9 Si 0.727 3.273
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.202 1.202
13 N -0.351 5.351
14 C 0.296 3.704
15 O -0.411 6.411
16 C 0.025 3.975
17 H 0.130 0.870
18 N -0.348 5.348
19 C -0.328 4.328
20 C -0.159 4.159
21 C -0.163 4.163
22 C -0.353 4.353
23 S 0.376 5.624
24 H 0.061 0.939
25 H 0.041 0.959
26 H 0.067 0.933
27 H 0.049 0.951
28 H 0.116 0.884
29 H 0.075 0.925
30 H 0.219 0.781
31 H 0.158 0.842
32 H 0.166 0.834
33 H 0.160 0.840
34 H 0.157 0.843
35 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -5.937 9.214 9.869 14.749
hybrid contribution 2.882 0.836 1.256 3.253
sum -3.055 10.050 11.125 15.301
Atomic orbital electron populations
1.21843 0.98177 0.98058 1.01438 1.21933 0.92748 0.99727 1.02212
1.18769 0.94103 0.89162 0.80854 0.93406 1.21193 0.90745 1.39027
1.06272 0.92207 1.24873 0.98507 0.94839 0.95393 1.69883 1.35176
1.37554 1.09330 0.86539 0.84999 0.78277 0.77463 1.20156 1.21111
1.20246 1.46422 1.14250 1.55805 1.18582 1.19862 0.82961 0.79421
0.88170 1.90665 1.51114 1.59581 1.39707 1.20035 0.88927 0.89346
0.99218 0.87020 1.58566 1.06776 1.61257 1.08233 1.25471 1.02810
0.99822 1.04715 1.20146 0.96855 0.96760 1.02146 1.20157 1.01294
0.93485 1.01386 1.25647 1.00668 1.03714 1.05310 1.84313 1.28490
0.99559 1.50006 0.93877 0.95929 0.93270 0.95066 0.88360 0.92516
0.78137 0.84217 0.83398 0.84039 0.84299 0.81997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.15 8.51 37.16 0.32 -2.84 16
2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16
3 C 0.27 6.88 2.24 -69.08 -0.15 6.73 16
4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16
5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16
6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16
7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16
8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16
9 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16
10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
13 N -0.70 -14.54 5.02 -54.94 -0.28 -14.81 16
14 C 0.51 10.12 5.63 -10.99 -0.06 10.06 16
15 O -0.53 -12.38 13.39 5.56 0.07 -12.30 16
16 C 0.14 2.10 3.59 -70.01 -0.25 1.85 16
17 H 0.11 1.42 8.12 -51.93 -0.42 1.00 16
18 N -0.82 -11.17 8.91 -6.65 -0.06 -11.23 16
19 C -0.21 -2.85 5.43 -36.00 -0.20 -3.05 16
20 C -0.13 -1.58 10.04 -41.20 -0.41 -2.00 16
21 C -0.13 -1.52 10.18 -41.21 -0.42 -1.94 16
22 C -0.22 -2.49 11.23 29.04 0.33 -2.17 16
23 S 0.11 1.47 22.54 -107.50 -2.42 -0.95 16
24 H 0.04 0.97 5.64 -51.93 -0.29 0.67 16
25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16
27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16
29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
30 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16
31 H 0.34 3.64 9.06 -39.29 -0.36 3.28 16
32 H 0.35 5.07 7.91 -39.29 -0.31 4.76 16
33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16
34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16
35 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16
LS Contribution 305.48 15.07 4.60 4.60
Total: -1.00 -30.44 305.48 -8.36 -38.80
By element:
Atomic # 1 Polarization: 18.28 SS G_CDS: -4.50 Total: 13.79 kcal
Atomic # 6 Polarization: -7.95 SS G_CDS: -1.39 Total: -9.34 kcal
Atomic # 7 Polarization: -50.55 SS G_CDS: 0.29 Total: -50.26 kcal
Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.30 kcal
Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal
Atomic # 16 Polarization: 1.47 SS G_CDS: -2.42 Total: -0.95 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -30.44 -8.36 -38.80 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000134027141.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.816 kcal
(2) G-P(sol) polarization free energy of solvation -30.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds