Wall clock time and date at job start Mon Mar 30 2020 04:32:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13594 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46948 * 212.33386 * 3 2 1
5 5 C 1.37097 * 120.00119 * 272.62662 * 4 3 2
6 6 H 1.08001 * 120.00302 * 142.97185 * 5 4 3
7 7 C 1.38957 * 120.00035 * 323.25040 * 5 4 3
8 8 N 1.31404 * 119.99772 * 155.57805 * 7 5 4
9 9 Si 1.86798 * 119.99618 * 335.58299 * 7 5 4
10 10 H 1.48492 * 109.47337 * 95.24050 * 9 7 5
11 11 H 1.48502 * 109.46865 * 215.23944 * 9 7 5
12 12 H 1.48499 * 109.47272 * 335.23694 * 9 7 5
13 13 C 1.34781 * 120.00321 * 92.62429 * 4 3 2
14 14 O 1.21286 * 120.00254 * 184.51099 * 13 4 3
15 15 C 1.50701 * 119.99377 * 4.51526 * 13 4 3
16 16 H 1.08997 * 110.55693 * 50.90457 * 15 13 4
17 17 C 1.55001 * 110.61523 * 288.02435 * 15 13 4
18 18 C 1.54993 * 102.00803 * 204.59814 * 17 15 13
19 19 C 1.54099 * 104.25526 * 20.67146 * 18 17 15
20 20 H 1.08998 * 109.99942 * 242.67032 * 19 18 17
21 21 C 1.50695 * 109.88083 * 121.58835 * 19 18 17
22 22 O 1.20833 * 120.00107 * 245.71884 * 21 19 18
23 23 O 1.34222 * 120.00282 * 65.71278 * 21 19 18
24 24 O 1.43750 * 107.29348 * 2.16201 * 19 18 17
25 25 H 1.09002 * 109.46998 * 92.33859 * 3 2 1
26 26 H 1.09000 * 109.47335 * 332.33222 * 3 2 1
27 27 H 0.97003 * 119.99728 * 179.97438 * 8 7 5
28 28 H 1.08993 * 110.91075 * 322.67927 * 17 15 13
29 29 H 1.08996 * 110.90202 * 86.28371 * 17 15 13
30 30 H 1.09003 * 110.34147 * 262.02339 * 18 17 15
31 31 H 1.08995 * 110.67990 * 139.48286 * 18 17 15
32 32 H 0.96695 * 117.00658 * 180.02562 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.6079 0.0007 0.0000
4 7 3.0957 1.1679 0.7388
5 6 3.2724 2.3638 0.0920
6 1 3.0429 3.2902 0.5975
7 6 3.7411 2.3837 -1.2160
8 7 3.4727 3.4076 -1.9945
9 14 4.7527 0.9548 -1.8673
10 1 3.8635 0.0035 -2.5810
11 1 5.7850 1.4658 -2.8046
12 1 5.4139 0.2592 -0.7341
13 6 3.3708 1.0663 2.0543
14 8 3.6959 2.0507 2.6837
15 6 3.2744 -0.2707 2.7430
16 1 3.8349 -1.0261 2.1924
17 6 1.7928 -0.6976 2.9010
18 6 1.8621 -1.6600 4.1139
19 6 3.1759 -1.2810 4.8244
20 1 3.8631 -2.1270 4.8136
21 6 2.8900 -0.8716 6.2462
22 8 3.0867 0.2675 6.5981
23 8 2.4167 -1.7722 7.1217
24 8 3.7485 -0.1770 4.1036
25 1 2.9712 0.0428 -1.0268
26 1 2.9717 -0.9093 0.4772
27 1 3.8002 3.4217 -2.9075
28 1 1.1617 0.1626 3.1240
29 1 1.4403 -1.2162 2.0094
30 1 1.8967 -2.6954 3.7747
31 1 1.0112 -1.5052 4.7773
32 1 2.2482 -1.4627 8.0222
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000222413041.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:16
Heat of formation + Delta-G solvation = -109.672968 kcal
Electronic energy + Delta-G solvation = -20788.895398 eV
Core-core repulsion = 17330.343842 eV
Total energy + Delta-G solvation = -3458.551556 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.094 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.80542 -39.65047 -38.11244 -36.33881 -36.15243 -34.75645 -32.54385 -32.10649
-30.37812 -27.87724 -26.10469 -23.98974 -22.27791 -21.28508 -19.52151 -18.64251
-18.13464 -17.55025 -16.74973 -16.61676 -16.33126 -15.65876 -15.23931 -15.03464
-14.33599 -14.13575 -13.89319 -13.54190 -13.35386 -12.99290 -12.57292 -12.44593
-12.25816 -11.95776 -11.83173 -11.77902 -11.60441 -11.47435 -11.16345 -10.96407
-10.57964 -10.55743 -10.09598 -9.89097 -9.29145 -8.71862 -8.13838 -6.56509
-4.16535 2.08839 2.49930 2.83468 2.92188 3.03270 3.09660 3.18054
3.34134 3.72100 3.97452 4.18097 4.35084 4.39811 4.58539 4.77761
4.89153 4.90524 5.00495 5.13954 5.22516 5.37933 5.45472 5.55516
5.62060 5.66996 5.98112 6.33608 6.57557 7.30068 7.79425 7.88298
8.03265 8.26142 8.73966 9.07040 9.43666 10.54913
Molecular weight = 268.09amu
Principal moments of inertia in cm(-1)
A = 0.028491 B = 0.005932 C = 0.005506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 982.527602 B = 4718.858328 C = 5084.200205
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.435 5.435
2 C 0.205 3.795
3 C 0.176 3.824
4 N -0.459 5.459
5 C -0.327 4.327
6 H 0.112 0.888
7 C 0.065 3.935
8 N -0.848 5.848
9 Si 0.857 3.143
10 H -0.269 1.269
11 H -0.278 1.278
12 H -0.254 1.254
13 C 0.482 3.518
14 O -0.517 6.517
15 C 0.055 3.945
16 H 0.098 0.902
17 C -0.149 4.149
18 C -0.138 4.138
19 C 0.085 3.915
20 H 0.112 0.888
21 C 0.473 3.527
22 O -0.484 6.484
23 O -0.517 6.517
24 O -0.315 6.315
25 H 0.112 0.888
26 H 0.110 0.890
27 H 0.278 0.722
28 H 0.087 0.913
29 H 0.091 0.909
30 H 0.096 0.904
31 H 0.086 0.914
32 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.454 -16.381 8.363 18.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.113 5.113
2 C -0.114 4.114
3 C 0.049 3.951
4 N -0.185 5.185
5 C -0.454 4.454
6 H 0.129 0.871
7 C -0.142 4.142
8 N -0.482 5.482
9 Si 0.682 3.318
10 H -0.196 1.196
11 H -0.204 1.204
12 H -0.178 1.178
13 C 0.268 3.732
14 O -0.393 6.393
15 C -0.006 4.006
16 H 0.116 0.884
17 C -0.187 4.187
18 C -0.176 4.176
19 C 0.025 3.975
20 H 0.129 0.871
21 C 0.313 3.687
22 O -0.369 6.369
23 O -0.331 6.331
24 O -0.232 6.232
25 H 0.129 0.871
26 H 0.127 0.873
27 H 0.088 0.912
28 H 0.106 0.894
29 H 0.110 0.890
30 H 0.114 0.886
31 H 0.104 0.896
32 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -1.644 -15.338 8.313 17.523
hybrid contribution 0.747 -0.563 -0.083 0.939
sum -0.897 -15.901 8.230 17.927
Atomic orbital electron populations
1.81075 1.13011 1.08360 1.08888 1.29877 0.95702 0.92896 0.92899
1.19584 0.81504 0.92525 1.01491 1.43494 1.58075 1.09955 1.06936
1.19032 1.45304 0.84335 0.96696 0.87092 1.25337 0.95987 0.97232
0.95691 1.69769 1.39997 1.31458 1.07008 0.87258 0.81727 0.82819
0.79946 1.19590 1.20404 1.17812 1.19758 0.81468 0.89047 0.82902
1.90656 1.47225 1.38033 1.63364 1.23293 0.94493 0.98176 0.84608
0.88417 1.23321 0.96429 1.00303 0.98671 1.22913 0.96313 1.01159
0.97209 1.22174 0.97150 0.91383 0.86760 0.87072 1.23283 0.73885
0.83363 0.88214 1.90802 1.46676 1.20719 1.78658 1.84466 1.78000
1.45016 1.25584 1.89152 1.67879 1.46372 1.19824 0.87093 0.87271
0.91177 0.89398 0.89049 0.88574 0.89567 0.72916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -8.35 18.54 42.15 0.78 -7.57 16
2 C 0.21 3.68 13.32 -20.76 -0.28 3.40 16
3 C 0.18 3.00 4.36 -6.83 -0.03 2.97 16
4 N -0.46 -10.10 2.14 -117.93 -0.25 -10.36 16
5 C -0.33 -8.65 9.36 -14.93 -0.14 -8.79 16
6 H 0.11 3.39 7.86 -52.49 -0.41 2.97 16
7 C 0.07 1.67 5.29 -17.47 -0.09 1.57 16
8 N -0.85 -23.11 13.96 55.50 0.77 -22.34 16
9 Si 0.86 17.66 25.17 -169.99 -4.28 13.38 16
10 H -0.27 -4.96 6.64 56.52 0.38 -4.58 16
11 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16
12 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16
13 C 0.48 10.64 7.02 -10.98 -0.08 10.56 16
14 O -0.52 -14.08 16.42 -13.43 -0.22 -14.30 16
15 C 0.06 0.89 2.77 -26.83 -0.07 0.82 16
16 H 0.10 1.19 7.12 -51.93 -0.37 0.82 16
17 C -0.15 -2.00 5.44 -24.62 -0.13 -2.13 16
18 C -0.14 -1.40 6.64 -25.10 -0.17 -1.56 16
19 C 0.09 1.05 3.96 -27.31 -0.11 0.94 16
20 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16
21 C 0.47 6.25 7.43 36.00 0.27 6.52 16
22 O -0.48 -8.77 17.28 -25.39 -0.44 -9.21 16
23 O -0.52 -4.57 13.42 -39.24 -0.53 -5.09 16
24 O -0.31 -5.57 10.03 -64.28 -0.64 -6.21 16
25 H 0.11 1.95 3.21 -51.93 -0.17 1.78 16
26 H 0.11 1.29 5.69 -51.93 -0.30 0.99 16
27 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16
28 H 0.09 1.40 8.05 -51.93 -0.42 0.99 16
29 H 0.09 1.06 5.69 -51.93 -0.30 0.76 16
30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16
32 H 0.41 1.96 9.10 45.56 0.41 2.37 16
LS Contribution 282.41 15.07 4.26 4.26
Total: -1.00 -35.91 282.41 -3.33 -39.24
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: -1.95 Total: 3.90 kcal
Atomic # 6 Polarization: 15.13 SS G_CDS: -0.83 Total: 14.30 kcal
Atomic # 7 Polarization: -41.56 SS G_CDS: 1.30 Total: -40.26 kcal
Atomic # 8 Polarization: -32.98 SS G_CDS: -1.83 Total: -34.81 kcal
Atomic # 14 Polarization: 17.66 SS G_CDS: -4.28 Total: 13.38 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -35.91 -3.33 -39.24 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000222413041.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.432 kcal
(2) G-P(sol) polarization free energy of solvation -35.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds