Wall clock time and date at job start Mon Mar 30 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46948 * 212.33386 * 3 2 1 5 5 C 1.37097 * 120.00119 * 272.62662 * 4 3 2 6 6 H 1.08001 * 120.00302 * 142.97185 * 5 4 3 7 7 C 1.38957 * 120.00035 * 323.25040 * 5 4 3 8 8 N 1.31404 * 119.99772 * 155.57805 * 7 5 4 9 9 Si 1.86798 * 119.99618 * 335.58299 * 7 5 4 10 10 H 1.48492 * 109.47337 * 95.24050 * 9 7 5 11 11 H 1.48502 * 109.46865 * 215.23944 * 9 7 5 12 12 H 1.48499 * 109.47272 * 335.23694 * 9 7 5 13 13 C 1.34781 * 120.00321 * 92.62429 * 4 3 2 14 14 O 1.21286 * 120.00254 * 184.51099 * 13 4 3 15 15 C 1.50701 * 119.99377 * 4.51526 * 13 4 3 16 16 H 1.08997 * 110.55693 * 50.90457 * 15 13 4 17 17 C 1.55001 * 110.61523 * 288.02435 * 15 13 4 18 18 C 1.54993 * 102.00803 * 204.59814 * 17 15 13 19 19 C 1.54099 * 104.25526 * 20.67146 * 18 17 15 20 20 H 1.08998 * 109.99942 * 242.67032 * 19 18 17 21 21 C 1.50695 * 109.88083 * 121.58835 * 19 18 17 22 22 O 1.20833 * 120.00107 * 245.71884 * 21 19 18 23 23 O 1.34222 * 120.00282 * 65.71278 * 21 19 18 24 24 O 1.43750 * 107.29348 * 2.16201 * 19 18 17 25 25 H 1.09002 * 109.46998 * 92.33859 * 3 2 1 26 26 H 1.09000 * 109.47335 * 332.33222 * 3 2 1 27 27 H 0.97003 * 119.99728 * 179.97438 * 8 7 5 28 28 H 1.08993 * 110.91075 * 322.67927 * 17 15 13 29 29 H 1.08996 * 110.90202 * 86.28371 * 17 15 13 30 30 H 1.09003 * 110.34147 * 262.02339 * 18 17 15 31 31 H 1.08995 * 110.67990 * 139.48286 * 18 17 15 32 32 H 0.96695 * 117.00658 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1679 0.7388 5 6 3.2724 2.3638 0.0920 6 1 3.0429 3.2902 0.5975 7 6 3.7411 2.3837 -1.2160 8 7 3.4727 3.4076 -1.9945 9 14 4.7527 0.9548 -1.8673 10 1 3.8635 0.0035 -2.5810 11 1 5.7850 1.4658 -2.8046 12 1 5.4139 0.2592 -0.7341 13 6 3.3708 1.0663 2.0543 14 8 3.6959 2.0507 2.6837 15 6 3.2744 -0.2707 2.7430 16 1 3.8349 -1.0261 2.1924 17 6 1.7928 -0.6976 2.9010 18 6 1.8621 -1.6600 4.1139 19 6 3.1759 -1.2810 4.8244 20 1 3.8631 -2.1270 4.8136 21 6 2.8900 -0.8716 6.2462 22 8 3.0867 0.2675 6.5981 23 8 2.4167 -1.7722 7.1217 24 8 3.7485 -0.1770 4.1036 25 1 2.9712 0.0428 -1.0268 26 1 2.9717 -0.9093 0.4772 27 1 3.8002 3.4217 -2.9075 28 1 1.1617 0.1626 3.1240 29 1 1.4403 -1.2162 2.0094 30 1 1.8967 -2.6954 3.7747 31 1 1.0112 -1.5052 4.7773 32 1 2.2482 -1.4627 8.0222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222413041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:16 Heat of formation + Delta-G solvation = -109.672968 kcal Electronic energy + Delta-G solvation = -20788.895398 eV Core-core repulsion = 17330.343842 eV Total energy + Delta-G solvation = -3458.551556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80542 -39.65047 -38.11244 -36.33881 -36.15243 -34.75645 -32.54385 -32.10649 -30.37812 -27.87724 -26.10469 -23.98974 -22.27791 -21.28508 -19.52151 -18.64251 -18.13464 -17.55025 -16.74973 -16.61676 -16.33126 -15.65876 -15.23931 -15.03464 -14.33599 -14.13575 -13.89319 -13.54190 -13.35386 -12.99290 -12.57292 -12.44593 -12.25816 -11.95776 -11.83173 -11.77902 -11.60441 -11.47435 -11.16345 -10.96407 -10.57964 -10.55743 -10.09598 -9.89097 -9.29145 -8.71862 -8.13838 -6.56509 -4.16535 2.08839 2.49930 2.83468 2.92188 3.03270 3.09660 3.18054 3.34134 3.72100 3.97452 4.18097 4.35084 4.39811 4.58539 4.77761 4.89153 4.90524 5.00495 5.13954 5.22516 5.37933 5.45472 5.55516 5.62060 5.66996 5.98112 6.33608 6.57557 7.30068 7.79425 7.88298 8.03265 8.26142 8.73966 9.07040 9.43666 10.54913 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.005932 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.527602 B = 4718.858328 C = 5084.200205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.205 3.795 3 C 0.176 3.824 4 N -0.459 5.459 5 C -0.327 4.327 6 H 0.112 0.888 7 C 0.065 3.935 8 N -0.848 5.848 9 Si 0.857 3.143 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.254 1.254 13 C 0.482 3.518 14 O -0.517 6.517 15 C 0.055 3.945 16 H 0.098 0.902 17 C -0.149 4.149 18 C -0.138 4.138 19 C 0.085 3.915 20 H 0.112 0.888 21 C 0.473 3.527 22 O -0.484 6.484 23 O -0.517 6.517 24 O -0.315 6.315 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.278 0.722 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -16.381 8.363 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.114 4.114 3 C 0.049 3.951 4 N -0.185 5.185 5 C -0.454 4.454 6 H 0.129 0.871 7 C -0.142 4.142 8 N -0.482 5.482 9 Si 0.682 3.318 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.268 3.732 14 O -0.393 6.393 15 C -0.006 4.006 16 H 0.116 0.884 17 C -0.187 4.187 18 C -0.176 4.176 19 C 0.025 3.975 20 H 0.129 0.871 21 C 0.313 3.687 22 O -0.369 6.369 23 O -0.331 6.331 24 O -0.232 6.232 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.644 -15.338 8.313 17.523 hybrid contribution 0.747 -0.563 -0.083 0.939 sum -0.897 -15.901 8.230 17.927 Atomic orbital electron populations 1.81075 1.13011 1.08360 1.08888 1.29877 0.95702 0.92896 0.92899 1.19584 0.81504 0.92525 1.01491 1.43494 1.58075 1.09955 1.06936 1.19032 1.45304 0.84335 0.96696 0.87092 1.25337 0.95987 0.97232 0.95691 1.69769 1.39997 1.31458 1.07008 0.87258 0.81727 0.82819 0.79946 1.19590 1.20404 1.17812 1.19758 0.81468 0.89047 0.82902 1.90656 1.47225 1.38033 1.63364 1.23293 0.94493 0.98176 0.84608 0.88417 1.23321 0.96429 1.00303 0.98671 1.22913 0.96313 1.01159 0.97209 1.22174 0.97150 0.91383 0.86760 0.87072 1.23283 0.73885 0.83363 0.88214 1.90802 1.46676 1.20719 1.78658 1.84466 1.78000 1.45016 1.25584 1.89152 1.67879 1.46372 1.19824 0.87093 0.87271 0.91177 0.89398 0.89049 0.88574 0.89567 0.72916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.35 18.54 42.15 0.78 -7.57 16 2 C 0.21 3.68 13.32 -20.76 -0.28 3.40 16 3 C 0.18 3.00 4.36 -6.83 -0.03 2.97 16 4 N -0.46 -10.10 2.14 -117.93 -0.25 -10.36 16 5 C -0.33 -8.65 9.36 -14.93 -0.14 -8.79 16 6 H 0.11 3.39 7.86 -52.49 -0.41 2.97 16 7 C 0.07 1.67 5.29 -17.47 -0.09 1.57 16 8 N -0.85 -23.11 13.96 55.50 0.77 -22.34 16 9 Si 0.86 17.66 25.17 -169.99 -4.28 13.38 16 10 H -0.27 -4.96 6.64 56.52 0.38 -4.58 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 12 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16 13 C 0.48 10.64 7.02 -10.98 -0.08 10.56 16 14 O -0.52 -14.08 16.42 -13.43 -0.22 -14.30 16 15 C 0.06 0.89 2.77 -26.83 -0.07 0.82 16 16 H 0.10 1.19 7.12 -51.93 -0.37 0.82 16 17 C -0.15 -2.00 5.44 -24.62 -0.13 -2.13 16 18 C -0.14 -1.40 6.64 -25.10 -0.17 -1.56 16 19 C 0.09 1.05 3.96 -27.31 -0.11 0.94 16 20 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 21 C 0.47 6.25 7.43 36.00 0.27 6.52 16 22 O -0.48 -8.77 17.28 -25.39 -0.44 -9.21 16 23 O -0.52 -4.57 13.42 -39.24 -0.53 -5.09 16 24 O -0.31 -5.57 10.03 -64.28 -0.64 -6.21 16 25 H 0.11 1.95 3.21 -51.93 -0.17 1.78 16 26 H 0.11 1.29 5.69 -51.93 -0.30 0.99 16 27 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 1.40 8.05 -51.93 -0.42 0.99 16 29 H 0.09 1.06 5.69 -51.93 -0.30 0.76 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 32 H 0.41 1.96 9.10 45.56 0.41 2.37 16 LS Contribution 282.41 15.07 4.26 4.26 Total: -1.00 -35.91 282.41 -3.33 -39.24 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -1.95 Total: 3.90 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -0.83 Total: 14.30 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 1.30 Total: -40.26 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.83 Total: -34.81 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.28 Total: 13.38 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.91 -3.33 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222413041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.432 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds