Wall clock time and date at job start Mon Mar 30 2020 04:32:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13594 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46948 * 212.33386 * 3 2 1
5 5 C 1.37097 * 120.00119 * 272.62662 * 4 3 2
6 6 H 1.08001 * 120.00302 * 142.97185 * 5 4 3
7 7 C 1.38957 * 120.00035 * 323.25040 * 5 4 3
8 8 N 1.31404 * 119.99772 * 155.57805 * 7 5 4
9 9 Si 1.86798 * 119.99618 * 335.58299 * 7 5 4
10 10 H 1.48492 * 109.47337 * 95.24050 * 9 7 5
11 11 H 1.48502 * 109.46865 * 215.23944 * 9 7 5
12 12 H 1.48499 * 109.47272 * 335.23694 * 9 7 5
13 13 C 1.34781 * 120.00321 * 92.62429 * 4 3 2
14 14 O 1.21286 * 120.00254 * 184.51099 * 13 4 3
15 15 C 1.50701 * 119.99377 * 4.51526 * 13 4 3
16 16 H 1.08997 * 110.55693 * 50.90457 * 15 13 4
17 17 C 1.55001 * 110.61523 * 288.02435 * 15 13 4
18 18 C 1.54993 * 102.00803 * 204.59814 * 17 15 13
19 19 C 1.54099 * 104.25526 * 20.67146 * 18 17 15
20 20 H 1.08998 * 109.99942 * 242.67032 * 19 18 17
21 21 C 1.50695 * 109.88083 * 121.58835 * 19 18 17
22 22 O 1.20833 * 120.00107 * 245.71884 * 21 19 18
23 23 O 1.34222 * 120.00282 * 65.71278 * 21 19 18
24 24 O 1.43750 * 107.29348 * 2.16201 * 19 18 17
25 25 H 1.09002 * 109.46998 * 92.33859 * 3 2 1
26 26 H 1.09000 * 109.47335 * 332.33222 * 3 2 1
27 27 H 0.97003 * 119.99728 * 179.97438 * 8 7 5
28 28 H 1.08993 * 110.91075 * 322.67927 * 17 15 13
29 29 H 1.08996 * 110.90202 * 86.28371 * 17 15 13
30 30 H 1.09003 * 110.34147 * 262.02339 * 18 17 15
31 31 H 1.08995 * 110.67990 * 139.48286 * 18 17 15
32 32 H 0.96695 * 117.00658 * 180.02562 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.6079 0.0007 0.0000
4 7 3.0957 1.1679 0.7388
5 6 3.2724 2.3638 0.0920
6 1 3.0429 3.2902 0.5975
7 6 3.7411 2.3837 -1.2160
8 7 3.4727 3.4076 -1.9945
9 14 4.7527 0.9548 -1.8673
10 1 3.8635 0.0035 -2.5810
11 1 5.7850 1.4658 -2.8046
12 1 5.4139 0.2592 -0.7341
13 6 3.3708 1.0663 2.0543
14 8 3.6959 2.0507 2.6837
15 6 3.2744 -0.2707 2.7430
16 1 3.8349 -1.0261 2.1924
17 6 1.7928 -0.6976 2.9010
18 6 1.8621 -1.6600 4.1139
19 6 3.1759 -1.2810 4.8244
20 1 3.8631 -2.1270 4.8136
21 6 2.8900 -0.8716 6.2462
22 8 3.0867 0.2675 6.5981
23 8 2.4167 -1.7722 7.1217
24 8 3.7485 -0.1770 4.1036
25 1 2.9712 0.0428 -1.0268
26 1 2.9717 -0.9093 0.4772
27 1 3.8002 3.4217 -2.9075
28 1 1.1617 0.1626 3.1240
29 1 1.4403 -1.2162 2.0094
30 1 1.8967 -2.6954 3.7747
31 1 1.0112 -1.5052 4.7773
32 1 2.2482 -1.4627 8.0222
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000222413041.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:32:16
Heat of formation + Delta-G solvation = -139.117127 kcal
Electronic energy + Delta-G solvation = -20790.172193 eV
Core-core repulsion = 17330.343842 eV
Total energy + Delta-G solvation = -3459.828351 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.094 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.91321 -40.98208 -39.41757 -37.93261 -37.11267 -36.46761 -34.30544 -33.27936
-31.55318 -29.40819 -27.64429 -25.40270 -23.33203 -22.18943 -21.09033 -20.31399
-19.17522 -18.69078 -18.30211 -17.82918 -17.55936 -17.16827 -16.50057 -16.08600
-15.84625 -15.53569 -15.34194 -14.80897 -14.63089 -14.42402 -14.28168 -13.96949
-13.64399 -13.24901 -13.04711 -12.88459 -12.75385 -12.65525 -12.54822 -12.18691
-12.11926 -11.75901 -11.61979 -11.11659 -10.94290 -10.40805 -10.03048 -8.51321
-6.20161 1.11253 1.24714 1.38632 1.39964 1.55699 1.58799 1.74206
1.84350 2.23005 2.45170 2.80156 2.99451 3.20012 3.36193 3.59903
3.73347 3.90488 3.99463 4.07795 4.12279 4.29654 4.37222 4.53824
4.74332 4.88719 4.98749 5.38254 5.53460 5.65964 6.00675 6.40582
6.50277 6.84539 6.95552 7.12654 7.66552 8.65769
Molecular weight = 268.09amu
Principal moments of inertia in cm(-1)
A = 0.028491 B = 0.005932 C = 0.005506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 982.527602 B = 4718.858328 C = 5084.200205
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.460 5.460
2 C 0.218 3.782
3 C 0.173 3.827
4 N -0.465 5.465
5 C -0.351 4.351
6 H 0.037 0.963
7 C 0.013 3.987
8 N -0.905 5.905
9 Si 0.931 3.069
10 H -0.218 1.218
11 H -0.288 1.288
12 H -0.227 1.227
13 C 0.470 3.530
14 O -0.591 6.591
15 C 0.062 3.938
16 H 0.158 0.842
17 C -0.148 4.148
18 C -0.123 4.123
19 C 0.075 3.925
20 H 0.161 0.839
21 C 0.477 3.523
22 O -0.550 6.550
23 O -0.496 6.496
24 O -0.362 6.362
25 H 0.116 0.884
26 H 0.179 0.821
27 H 0.283 0.717
28 H 0.046 0.954
29 H 0.118 0.882
30 H 0.150 0.850
31 H 0.086 0.914
32 H 0.430 0.570
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.117 -22.206 7.813 23.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.139 5.139
2 C -0.101 4.101
3 C 0.047 3.953
4 N -0.189 5.189
5 C -0.478 4.478
6 H 0.055 0.945
7 C -0.190 4.190
8 N -0.540 5.540
9 Si 0.750 3.250
10 H -0.142 1.142
11 H -0.214 1.214
12 H -0.149 1.149
13 C 0.260 3.740
14 O -0.471 6.471
15 C 0.002 3.998
16 H 0.175 0.825
17 C -0.186 4.186
18 C -0.161 4.161
19 C 0.017 3.983
20 H 0.178 0.822
21 C 0.320 3.680
22 O -0.439 6.439
23 O -0.310 6.310
24 O -0.281 6.281
25 H 0.133 0.867
26 H 0.196 0.804
27 H 0.093 0.907
28 H 0.065 0.935
29 H 0.136 0.864
30 H 0.168 0.832
31 H 0.105 0.895
32 H 0.292 0.708
Dipole moment (debyes) X Y Z Total
from point charges -1.132 -21.236 7.779 22.644
hybrid contribution 0.479 1.366 0.205 1.462
sum -0.653 -19.870 7.983 21.424
Atomic orbital electron populations
1.81100 1.13903 1.09130 1.09757 1.30002 0.95826 0.92131 0.92112
1.20042 0.80653 0.92712 1.01863 1.43481 1.58133 1.09946 1.07332
1.18519 1.47607 0.84449 0.97263 0.94506 1.26318 0.96076 1.01474
0.95138 1.69909 1.41316 1.35000 1.07821 0.86116 0.79650 0.79150
0.80092 1.14234 1.21418 1.14901 1.21021 0.79326 0.90977 0.82696
1.90613 1.50199 1.41283 1.65054 1.23399 0.97159 0.94714 0.84499
0.82516 1.23320 0.93825 0.99955 1.01521 1.22990 0.95012 1.02875
0.95189 1.22705 0.99264 0.90901 0.85429 0.82223 1.23733 0.72374
0.82657 0.89280 1.90794 1.49765 1.23473 1.79902 1.84421 1.76701
1.43395 1.26532 1.89116 1.68811 1.49303 1.20823 0.86692 0.80400
0.90697 0.93527 0.86405 0.83175 0.89518 0.70761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -16.89 18.54 20.00 0.37 -16.52 16
2 C 0.22 7.25 13.32 89.44 1.19 8.44 16
3 C 0.17 5.20 4.36 84.57 0.37 5.56 16
4 N -0.46 -20.35 2.14 -645.41 -1.38 -21.73 16
5 C -0.35 -19.63 9.36 84.04 0.79 -18.84 16
6 H 0.04 2.53 7.86 -2.91 -0.02 2.50 16
7 C 0.01 0.70 5.29 84.93 0.45 1.14 16
8 N -0.90 -51.58 13.96 21.66 0.30 -51.28 16
9 Si 0.93 34.40 25.17 68.60 1.73 36.13 16
10 H -0.22 -6.39 6.64 99.48 0.66 -5.73 16
11 H -0.29 -11.11 7.11 99.48 0.71 -10.40 16
12 H -0.23 -7.39 7.11 99.48 0.71 -6.68 16
13 C 0.47 21.00 7.02 87.66 0.62 21.62 16
14 O -0.59 -34.48 16.42 15.10 0.25 -34.23 16
15 C 0.06 1.82 2.77 30.53 0.08 1.91 16
16 H 0.16 2.70 7.12 -2.39 -0.02 2.68 16
17 C -0.15 -3.47 5.44 31.96 0.17 -3.30 16
18 C -0.12 -1.86 6.64 31.65 0.21 -1.65 16
19 C 0.08 1.56 3.96 30.22 0.12 1.68 16
20 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16
21 C 0.48 11.74 7.43 71.23 0.53 12.27 16
22 O -0.55 -20.35 17.28 28.28 0.49 -19.86 16
23 O -0.50 -7.18 13.42 -51.34 -0.69 -7.87 16
24 O -0.36 -12.22 10.03 -121.20 -1.22 -13.43 16
25 H 0.12 3.44 3.21 -2.39 -0.01 3.43 16
26 H 0.18 2.85 5.69 -2.39 -0.01 2.84 16
27 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16
28 H 0.05 1.47 8.05 -2.39 -0.02 1.46 16
29 H 0.12 2.10 5.69 -2.39 -0.01 2.09 16
30 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.09 1.34 7.69 -2.39 -0.02 1.32 16
32 H 0.43 3.01 9.10 -74.06 -0.67 2.33 16
Total: -1.00 -92.59 282.41 4.86 -87.73
By element:
Atomic # 1 Polarization: 11.74 SS G_CDS: 0.48 Total: 12.22 kcal
Atomic # 6 Polarization: 24.31 SS G_CDS: 4.53 Total: 28.84 kcal
Atomic # 7 Polarization: -88.82 SS G_CDS: -0.71 Total: -89.53 kcal
Atomic # 8 Polarization: -74.22 SS G_CDS: -1.17 Total: -75.39 kcal
Atomic # 14 Polarization: 34.40 SS G_CDS: 1.73 Total: 36.13 kcal
Total: -92.59 4.86 -87.73 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000222413041.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.388 kcal
(2) G-P(sol) polarization free energy of solvation -92.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds