Wall clock time and date at job start Mon Mar 30 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46948 * 212.33386 * 3 2 1 5 5 C 1.37097 * 120.00119 * 272.62662 * 4 3 2 6 6 H 1.08001 * 120.00302 * 142.97185 * 5 4 3 7 7 C 1.38957 * 120.00035 * 323.25040 * 5 4 3 8 8 N 1.31404 * 119.99772 * 155.57805 * 7 5 4 9 9 Si 1.86798 * 119.99618 * 335.58299 * 7 5 4 10 10 H 1.48492 * 109.47337 * 95.24050 * 9 7 5 11 11 H 1.48502 * 109.46865 * 215.23944 * 9 7 5 12 12 H 1.48499 * 109.47272 * 335.23694 * 9 7 5 13 13 C 1.34781 * 120.00321 * 92.62429 * 4 3 2 14 14 O 1.21286 * 120.00254 * 184.51099 * 13 4 3 15 15 C 1.50701 * 119.99377 * 4.51526 * 13 4 3 16 16 H 1.08997 * 110.55693 * 50.90457 * 15 13 4 17 17 C 1.55001 * 110.61523 * 288.02435 * 15 13 4 18 18 C 1.54993 * 102.00803 * 204.59814 * 17 15 13 19 19 C 1.54099 * 104.25526 * 20.67146 * 18 17 15 20 20 H 1.08998 * 109.99942 * 242.67032 * 19 18 17 21 21 C 1.50695 * 109.88083 * 121.58835 * 19 18 17 22 22 O 1.20833 * 120.00107 * 245.71884 * 21 19 18 23 23 O 1.34222 * 120.00282 * 65.71278 * 21 19 18 24 24 O 1.43750 * 107.29348 * 2.16201 * 19 18 17 25 25 H 1.09002 * 109.46998 * 92.33859 * 3 2 1 26 26 H 1.09000 * 109.47335 * 332.33222 * 3 2 1 27 27 H 0.97003 * 119.99728 * 179.97438 * 8 7 5 28 28 H 1.08993 * 110.91075 * 322.67927 * 17 15 13 29 29 H 1.08996 * 110.90202 * 86.28371 * 17 15 13 30 30 H 1.09003 * 110.34147 * 262.02339 * 18 17 15 31 31 H 1.08995 * 110.67990 * 139.48286 * 18 17 15 32 32 H 0.96695 * 117.00658 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1679 0.7388 5 6 3.2724 2.3638 0.0920 6 1 3.0429 3.2902 0.5975 7 6 3.7411 2.3837 -1.2160 8 7 3.4727 3.4076 -1.9945 9 14 4.7527 0.9548 -1.8673 10 1 3.8635 0.0035 -2.5810 11 1 5.7850 1.4658 -2.8046 12 1 5.4139 0.2592 -0.7341 13 6 3.3708 1.0663 2.0543 14 8 3.6959 2.0507 2.6837 15 6 3.2744 -0.2707 2.7430 16 1 3.8349 -1.0261 2.1924 17 6 1.7928 -0.6976 2.9010 18 6 1.8621 -1.6600 4.1139 19 6 3.1759 -1.2810 4.8244 20 1 3.8631 -2.1270 4.8136 21 6 2.8900 -0.8716 6.2462 22 8 3.0867 0.2675 6.5981 23 8 2.4167 -1.7722 7.1217 24 8 3.7485 -0.1770 4.1036 25 1 2.9712 0.0428 -1.0268 26 1 2.9717 -0.9093 0.4772 27 1 3.8002 3.4217 -2.9075 28 1 1.1617 0.1626 3.1240 29 1 1.4403 -1.2162 2.0094 30 1 1.8967 -2.6954 3.7747 31 1 1.0112 -1.5052 4.7773 32 1 2.2482 -1.4627 8.0222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222413041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:16 Heat of formation + Delta-G solvation = -139.117127 kcal Electronic energy + Delta-G solvation = -20790.172193 eV Core-core repulsion = 17330.343842 eV Total energy + Delta-G solvation = -3459.828351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.91321 -40.98208 -39.41757 -37.93261 -37.11267 -36.46761 -34.30544 -33.27936 -31.55318 -29.40819 -27.64429 -25.40270 -23.33203 -22.18943 -21.09033 -20.31399 -19.17522 -18.69078 -18.30211 -17.82918 -17.55936 -17.16827 -16.50057 -16.08600 -15.84625 -15.53569 -15.34194 -14.80897 -14.63089 -14.42402 -14.28168 -13.96949 -13.64399 -13.24901 -13.04711 -12.88459 -12.75385 -12.65525 -12.54822 -12.18691 -12.11926 -11.75901 -11.61979 -11.11659 -10.94290 -10.40805 -10.03048 -8.51321 -6.20161 1.11253 1.24714 1.38632 1.39964 1.55699 1.58799 1.74206 1.84350 2.23005 2.45170 2.80156 2.99451 3.20012 3.36193 3.59903 3.73347 3.90488 3.99463 4.07795 4.12279 4.29654 4.37222 4.53824 4.74332 4.88719 4.98749 5.38254 5.53460 5.65964 6.00675 6.40582 6.50277 6.84539 6.95552 7.12654 7.66552 8.65769 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.005932 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.527602 B = 4718.858328 C = 5084.200205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.218 3.782 3 C 0.173 3.827 4 N -0.465 5.465 5 C -0.351 4.351 6 H 0.037 0.963 7 C 0.013 3.987 8 N -0.905 5.905 9 Si 0.931 3.069 10 H -0.218 1.218 11 H -0.288 1.288 12 H -0.227 1.227 13 C 0.470 3.530 14 O -0.591 6.591 15 C 0.062 3.938 16 H 0.158 0.842 17 C -0.148 4.148 18 C -0.123 4.123 19 C 0.075 3.925 20 H 0.161 0.839 21 C 0.477 3.523 22 O -0.550 6.550 23 O -0.496 6.496 24 O -0.362 6.362 25 H 0.116 0.884 26 H 0.179 0.821 27 H 0.283 0.717 28 H 0.046 0.954 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -22.206 7.813 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.101 4.101 3 C 0.047 3.953 4 N -0.189 5.189 5 C -0.478 4.478 6 H 0.055 0.945 7 C -0.190 4.190 8 N -0.540 5.540 9 Si 0.750 3.250 10 H -0.142 1.142 11 H -0.214 1.214 12 H -0.149 1.149 13 C 0.260 3.740 14 O -0.471 6.471 15 C 0.002 3.998 16 H 0.175 0.825 17 C -0.186 4.186 18 C -0.161 4.161 19 C 0.017 3.983 20 H 0.178 0.822 21 C 0.320 3.680 22 O -0.439 6.439 23 O -0.310 6.310 24 O -0.281 6.281 25 H 0.133 0.867 26 H 0.196 0.804 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.105 0.895 32 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -1.132 -21.236 7.779 22.644 hybrid contribution 0.479 1.366 0.205 1.462 sum -0.653 -19.870 7.983 21.424 Atomic orbital electron populations 1.81100 1.13903 1.09130 1.09757 1.30002 0.95826 0.92131 0.92112 1.20042 0.80653 0.92712 1.01863 1.43481 1.58133 1.09946 1.07332 1.18519 1.47607 0.84449 0.97263 0.94506 1.26318 0.96076 1.01474 0.95138 1.69909 1.41316 1.35000 1.07821 0.86116 0.79650 0.79150 0.80092 1.14234 1.21418 1.14901 1.21021 0.79326 0.90977 0.82696 1.90613 1.50199 1.41283 1.65054 1.23399 0.97159 0.94714 0.84499 0.82516 1.23320 0.93825 0.99955 1.01521 1.22990 0.95012 1.02875 0.95189 1.22705 0.99264 0.90901 0.85429 0.82223 1.23733 0.72374 0.82657 0.89280 1.90794 1.49765 1.23473 1.79902 1.84421 1.76701 1.43395 1.26532 1.89116 1.68811 1.49303 1.20823 0.86692 0.80400 0.90697 0.93527 0.86405 0.83175 0.89518 0.70761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.89 18.54 20.00 0.37 -16.52 16 2 C 0.22 7.25 13.32 89.44 1.19 8.44 16 3 C 0.17 5.20 4.36 84.57 0.37 5.56 16 4 N -0.46 -20.35 2.14 -645.41 -1.38 -21.73 16 5 C -0.35 -19.63 9.36 84.04 0.79 -18.84 16 6 H 0.04 2.53 7.86 -2.91 -0.02 2.50 16 7 C 0.01 0.70 5.29 84.93 0.45 1.14 16 8 N -0.90 -51.58 13.96 21.66 0.30 -51.28 16 9 Si 0.93 34.40 25.17 68.60 1.73 36.13 16 10 H -0.22 -6.39 6.64 99.48 0.66 -5.73 16 11 H -0.29 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.23 -7.39 7.11 99.48 0.71 -6.68 16 13 C 0.47 21.00 7.02 87.66 0.62 21.62 16 14 O -0.59 -34.48 16.42 15.10 0.25 -34.23 16 15 C 0.06 1.82 2.77 30.53 0.08 1.91 16 16 H 0.16 2.70 7.12 -2.39 -0.02 2.68 16 17 C -0.15 -3.47 5.44 31.96 0.17 -3.30 16 18 C -0.12 -1.86 6.64 31.65 0.21 -1.65 16 19 C 0.08 1.56 3.96 30.22 0.12 1.68 16 20 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 21 C 0.48 11.74 7.43 71.23 0.53 12.27 16 22 O -0.55 -20.35 17.28 28.28 0.49 -19.86 16 23 O -0.50 -7.18 13.42 -51.34 -0.69 -7.87 16 24 O -0.36 -12.22 10.03 -121.20 -1.22 -13.43 16 25 H 0.12 3.44 3.21 -2.39 -0.01 3.43 16 26 H 0.18 2.85 5.69 -2.39 -0.01 2.84 16 27 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.05 1.47 8.05 -2.39 -0.02 1.46 16 29 H 0.12 2.10 5.69 -2.39 -0.01 2.09 16 30 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.34 7.69 -2.39 -0.02 1.32 16 32 H 0.43 3.01 9.10 -74.06 -0.67 2.33 16 Total: -1.00 -92.59 282.41 4.86 -87.73 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.48 Total: 12.22 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 4.53 Total: 28.84 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -0.71 Total: -89.53 kcal Atomic # 8 Polarization: -74.22 SS G_CDS: -1.17 Total: -75.39 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 1.73 Total: 36.13 kcal Total: -92.59 4.86 -87.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222413041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.388 kcal (2) G-P(sol) polarization free energy of solvation -92.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds