Wall clock time and date at job start Mon Mar 30 2020 05:09:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.31134 * 126.54903 * 2 1
4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1
5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47320 * 89.99655 * 5 4 3
7 7 N 1.46498 * 109.47288 * 179.97438 * 6 5 4
8 8 C 1.34769 * 120.00016 * 179.97438 * 7 6 5
9 9 O 1.21436 * 120.00450 * 0.02562 * 8 7 6
10 10 C 1.48837 * 119.99995 * 180.02562 * 8 7 6
11 11 O 1.21497 * 119.99897 * 0.02562 * 10 8 7
12 12 N 1.34777 * 119.99776 * 180.02562 * 10 8 7
13 13 C 1.36121 * 119.99589 * 180.02562 * 12 10 8
14 14 H 1.07992 * 120.00330 * 359.97438 * 13 12 10
15 15 C 1.39585 * 119.99775 * 180.02562 * 13 12 10
16 16 N 1.31012 * 120.00206 * 359.97438 * 15 13 12
17 17 Si 1.86806 * 119.99971 * 179.97438 * 15 13 12
18 18 H 1.48497 * 109.46956 * 359.97438 * 17 15 13
19 19 H 1.48496 * 109.47297 * 119.99937 * 17 15 13
20 20 H 1.48505 * 109.47083 * 239.99833 * 17 15 13
21 21 N 1.29945 * 107.42860 * 359.97438 * 4 3 2
22 22 O 1.21304 * 110.24811 * 359.71096 * 21 4 3
23 23 H 1.09001 * 109.46953 * 90.00244 * 1 2 3
24 24 H 1.09000 * 109.47318 * 209.99842 * 1 2 3
25 25 H 1.09000 * 109.47161 * 330.00473 * 1 2 3
26 26 H 1.09001 * 109.47278 * 209.99816 * 5 4 3
27 27 H 1.08997 * 109.46942 * 329.99496 * 5 4 3
28 28 H 1.09001 * 109.47076 * 300.00285 * 6 5 4
29 29 H 1.09005 * 109.46978 * 60.00017 * 6 5 4
30 30 H 0.97001 * 120.00102 * 0.02562 * 7 6 5
31 31 H 0.96998 * 120.00378 * 359.97438 * 12 10 8
32 32 H 0.97004 * 120.00425 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2880 1.0535 0.0000
4 6 3.5441 0.5729 0.0006
5 6 4.8112 1.3887 0.0003
6 6 5.2397 1.6659 1.4427
7 7 6.4717 2.4584 1.4424
8 6 7.0378 2.8244 2.6094
9 8 6.5269 2.4969 3.6612
10 6 8.2892 3.6302 2.6090
11 8 8.8002 3.9583 1.5567
12 7 8.8556 3.9957 3.7761
13 6 9.9998 4.7330 3.7758
14 1 10.4540 5.0247 2.8405
15 6 10.5867 5.1112 4.9845
16 7 10.0360 4.7570 6.1192
17 14 12.1574 6.1225 4.9841
18 1 12.5738 6.3894 3.5839
19 1 11.9173 7.4101 5.6837
20 1 13.2300 5.3711 5.6844
21 7 3.4646 -0.7242 0.0015
22 8 2.3029 -1.0735 0.0072
23 1 -0.3633 0.0000 -1.0277
24 1 -0.3634 -0.8900 0.5138
25 1 -0.3633 0.8900 0.5138
26 1 5.5986 0.8367 -0.5130
27 1 4.6349 2.3332 -0.5143
28 1 4.4522 2.2178 1.9559
29 1 5.4159 0.7212 1.9573
30 1 6.8797 2.7204 0.6022
31 1 8.4475 3.7341 4.6163
32 1 10.4441 5.0194 6.9592
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000231894684.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:48
Heat of formation + Delta-G solvation = -9.295382 kcal
Electronic energy + Delta-G solvation = -19080.084844 eV
Core-core repulsion = 15658.178737 eV
Total energy + Delta-G solvation = -3421.906107 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.100 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-45.85305 -39.52872 -37.39046 -36.59009 -35.18793 -34.29190 -33.64604 -31.45303
-30.59542 -29.12745 -26.17157 -24.86367 -23.59973 -22.21948 -21.43288 -19.50946
-18.44968 -18.34618 -17.64384 -16.96259 -16.03718 -15.65127 -15.15779 -14.98340
-14.48244 -14.09412 -14.00229 -13.87504 -13.86001 -13.24019 -12.92443 -12.66112
-12.54387 -12.38747 -11.78500 -11.62544 -11.52117 -11.24731 -11.20823 -10.54325
-10.42001 -10.37815 -10.13147 -9.74483 -8.83648 -8.30816 -8.24045 -6.68418
-4.00647 0.88090 1.92761 2.41619 2.54540 3.08148 3.13358 3.17522
3.24852 3.53714 3.83668 4.07055 4.26072 4.59829 4.70973 4.79138
4.83440 4.99873 5.05589 5.12263 5.17914 5.33699 5.52333 5.70279
5.79994 5.83171 6.04536 6.66846 7.29988 7.64601 7.83693 7.91807
8.30176 8.58535 8.94449 9.30130 9.83219 10.46480
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.061174 B = 0.002871 C = 0.002812
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 457.599585 B = 9751.746426 C = 9954.120514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 C 0.175 3.825
3 N -0.478 5.478
4 C 0.180 3.820
5 C -0.042 4.042
6 C 0.129 3.871
7 N -0.715 5.715
8 C 0.515 3.485
9 O -0.545 6.545
10 C 0.395 3.605
11 O -0.597 6.597
12 N -0.498 5.498
13 C -0.305 4.305
14 H 0.114 0.886
15 C 0.030 3.970
16 N -0.868 5.868
17 Si 0.939 3.061
18 H -0.263 1.263
19 H -0.277 1.277
20 H -0.277 1.277
21 N -0.378 5.378
22 O 0.077 5.923
23 H 0.101 0.899
24 H 0.098 0.902
25 H 0.105 0.895
26 H 0.101 0.899
27 H 0.106 0.894
28 H 0.073 0.927
29 H 0.070 0.930
30 H 0.411 0.589
31 H 0.405 0.595
32 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.838 -8.436 -10.562 21.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.045 4.045
3 N -0.213 5.213
4 C -0.093 4.093
5 C -0.081 4.081
6 C 0.004 3.996
7 N -0.370 5.370
8 C 0.299 3.701
9 O -0.421 6.421
10 C 0.179 3.821
11 O -0.486 6.486
12 N -0.132 5.132
13 C -0.436 4.436
14 H 0.131 0.869
15 C -0.177 4.177
16 N -0.506 5.506
17 Si 0.764 3.236
18 H -0.187 1.187
19 H -0.203 1.203
20 H -0.203 1.203
21 N -0.085 5.085
22 O 0.018 5.982
23 H 0.120 0.880
24 H 0.116 0.884
25 H 0.124 0.876
26 H 0.120 0.880
27 H 0.124 0.876
28 H 0.091 0.909
29 H 0.088 0.912
30 H 0.248 0.752
31 H 0.240 0.760
32 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -16.035 -8.526 -10.267 20.862
hybrid contribution 0.443 0.321 0.208 0.585
sum -15.592 -8.205 -10.059 20.289
Atomic orbital electron populations
1.20403 0.80155 1.06014 1.05404 1.28875 0.98992 0.80751 0.95883
1.71924 1.00248 1.28885 1.20227 1.25526 0.95021 0.88155 1.00630
1.20143 0.89657 0.99533 0.98797 1.21124 0.87451 0.96580 0.94457
1.45542 1.26236 1.55373 1.09827 1.20713 0.85954 0.80156 0.83247
1.90697 1.64522 1.55618 1.31272 1.18882 0.87756 0.89851 0.85619
1.90579 1.65786 1.61634 1.30607 1.41574 1.21898 1.42386 1.07383
1.19941 1.00484 1.28147 0.94997 0.86859 1.25605 1.00059 0.97615
0.94372 1.69493 1.39903 1.43047 0.98161 0.85660 0.79949 0.78855
0.79109 1.18682 1.20259 1.20271 1.74684 0.97299 1.15675 1.20862
1.85300 1.11466 1.35793 1.65665 0.88035 0.88372 0.87625 0.88024
0.87557 0.90873 0.91205 0.75241 0.75978 0.90927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.20 10.51 36.01 0.38 0.17 16
2 C 0.18 1.55 8.51 -13.05 -0.11 1.44 16
3 N -0.48 -5.61 11.55 -9.87 -0.11 -5.73 16
4 C 0.18 2.24 7.47 -156.38 -1.17 1.07 16
5 C -0.04 -0.48 5.96 -27.88 -0.17 -0.64 16
6 C 0.13 1.86 5.66 -4.04 -0.02 1.84 16
7 N -0.71 -12.22 5.55 -60.93 -0.34 -12.56 16
8 C 0.51 11.32 7.87 -11.88 -0.09 11.23 16
9 O -0.54 -13.03 16.47 5.42 0.09 -12.94 16
10 C 0.39 9.99 7.82 -11.87 -0.09 9.90 16
11 O -0.60 -15.97 16.03 5.37 0.09 -15.88 16
12 N -0.50 -13.42 5.25 -11.59 -0.06 -13.48 16
13 C -0.31 -8.43 9.67 -15.15 -0.15 -8.58 16
14 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16
15 C 0.03 0.79 5.51 -17.40 -0.10 0.70 16
16 N -0.87 -23.36 13.03 55.53 0.72 -22.64 16
17 Si 0.94 20.09 29.56 -169.99 -5.02 15.07 16
18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16
20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
21 N -0.38 -4.85 12.16 30.90 0.38 -4.48 16
22 O 0.08 0.82 11.31 18.11 0.20 1.03 16
23 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16
24 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16
25 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16
26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
27 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
30 H 0.41 6.39 7.93 -40.82 -0.32 6.07 16
31 H 0.40 10.99 7.35 -40.82 -0.30 10.70 16
32 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16
LS Contribution 298.91 15.07 4.50 4.50
Total: -1.00 -33.71 298.91 -4.16 -37.87
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: -3.09 Total: 12.10 kcal
Atomic # 6 Polarization: 18.65 SS G_CDS: -1.52 Total: 17.13 kcal
Atomic # 7 Polarization: -59.46 SS G_CDS: 0.59 Total: -58.88 kcal
Atomic # 8 Polarization: -28.18 SS G_CDS: 0.38 Total: -27.80 kcal
Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -33.71 -4.16 -37.87 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000231894684.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.575 kcal
(2) G-P(sol) polarization free energy of solvation -33.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds