Wall clock time and date at job start Mon Mar 30 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47320 * 89.99655 * 5 4 3 7 7 N 1.46498 * 109.47288 * 179.97438 * 6 5 4 8 8 C 1.34769 * 120.00016 * 179.97438 * 7 6 5 9 9 O 1.21436 * 120.00450 * 0.02562 * 8 7 6 10 10 C 1.48837 * 119.99995 * 180.02562 * 8 7 6 11 11 O 1.21497 * 119.99897 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99776 * 180.02562 * 10 8 7 13 13 C 1.36121 * 119.99589 * 180.02562 * 12 10 8 14 14 H 1.07992 * 120.00330 * 359.97438 * 13 12 10 15 15 C 1.39585 * 119.99775 * 180.02562 * 13 12 10 16 16 N 1.31012 * 120.00206 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99971 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46956 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47297 * 119.99937 * 17 15 13 20 20 H 1.48505 * 109.47083 * 239.99833 * 17 15 13 21 21 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 22 22 O 1.21304 * 110.24811 * 359.71096 * 21 4 3 23 23 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 24 24 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 26 26 H 1.09001 * 109.47278 * 209.99816 * 5 4 3 27 27 H 1.08997 * 109.46942 * 329.99496 * 5 4 3 28 28 H 1.09001 * 109.47076 * 300.00285 * 6 5 4 29 29 H 1.09005 * 109.46978 * 60.00017 * 6 5 4 30 30 H 0.97001 * 120.00102 * 0.02562 * 7 6 5 31 31 H 0.96998 * 120.00378 * 359.97438 * 12 10 8 32 32 H 0.97004 * 120.00425 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0003 6 6 5.2397 1.6659 1.4427 7 7 6.4717 2.4584 1.4424 8 6 7.0378 2.8244 2.6094 9 8 6.5269 2.4969 3.6612 10 6 8.2892 3.6302 2.6090 11 8 8.8002 3.9583 1.5567 12 7 8.8556 3.9957 3.7761 13 6 9.9998 4.7330 3.7758 14 1 10.4540 5.0247 2.8405 15 6 10.5867 5.1112 4.9845 16 7 10.0360 4.7570 6.1192 17 14 12.1574 6.1225 4.9841 18 1 12.5738 6.3894 3.5839 19 1 11.9173 7.4101 5.6837 20 1 13.2300 5.3711 5.6844 21 7 3.4646 -0.7242 0.0015 22 8 2.3029 -1.0735 0.0072 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 5.5986 0.8367 -0.5130 27 1 4.6349 2.3332 -0.5143 28 1 4.4522 2.2178 1.9559 29 1 5.4159 0.7212 1.9573 30 1 6.8797 2.7204 0.6022 31 1 8.4475 3.7341 4.6163 32 1 10.4441 5.0194 6.9592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231894684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:48 Heat of formation + Delta-G solvation = -9.295382 kcal Electronic energy + Delta-G solvation = -19080.084844 eV Core-core repulsion = 15658.178737 eV Total energy + Delta-G solvation = -3421.906107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.85305 -39.52872 -37.39046 -36.59009 -35.18793 -34.29190 -33.64604 -31.45303 -30.59542 -29.12745 -26.17157 -24.86367 -23.59973 -22.21948 -21.43288 -19.50946 -18.44968 -18.34618 -17.64384 -16.96259 -16.03718 -15.65127 -15.15779 -14.98340 -14.48244 -14.09412 -14.00229 -13.87504 -13.86001 -13.24019 -12.92443 -12.66112 -12.54387 -12.38747 -11.78500 -11.62544 -11.52117 -11.24731 -11.20823 -10.54325 -10.42001 -10.37815 -10.13147 -9.74483 -8.83648 -8.30816 -8.24045 -6.68418 -4.00647 0.88090 1.92761 2.41619 2.54540 3.08148 3.13358 3.17522 3.24852 3.53714 3.83668 4.07055 4.26072 4.59829 4.70973 4.79138 4.83440 4.99873 5.05589 5.12263 5.17914 5.33699 5.52333 5.70279 5.79994 5.83171 6.04536 6.66846 7.29988 7.64601 7.83693 7.91807 8.30176 8.58535 8.94449 9.30130 9.83219 10.46480 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.061174 B = 0.002871 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.599585 B = 9751.746426 C = 9954.120514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.175 3.825 3 N -0.478 5.478 4 C 0.180 3.820 5 C -0.042 4.042 6 C 0.129 3.871 7 N -0.715 5.715 8 C 0.515 3.485 9 O -0.545 6.545 10 C 0.395 3.605 11 O -0.597 6.597 12 N -0.498 5.498 13 C -0.305 4.305 14 H 0.114 0.886 15 C 0.030 3.970 16 N -0.868 5.868 17 Si 0.939 3.061 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 N -0.378 5.378 22 O 0.077 5.923 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.411 0.589 31 H 0.405 0.595 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 -8.436 -10.562 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 N -0.213 5.213 4 C -0.093 4.093 5 C -0.081 4.081 6 C 0.004 3.996 7 N -0.370 5.370 8 C 0.299 3.701 9 O -0.421 6.421 10 C 0.179 3.821 11 O -0.486 6.486 12 N -0.132 5.132 13 C -0.436 4.436 14 H 0.131 0.869 15 C -0.177 4.177 16 N -0.506 5.506 17 Si 0.764 3.236 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 N -0.085 5.085 22 O 0.018 5.982 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.240 0.760 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.035 -8.526 -10.267 20.862 hybrid contribution 0.443 0.321 0.208 0.585 sum -15.592 -8.205 -10.059 20.289 Atomic orbital electron populations 1.20403 0.80155 1.06014 1.05404 1.28875 0.98992 0.80751 0.95883 1.71924 1.00248 1.28885 1.20227 1.25526 0.95021 0.88155 1.00630 1.20143 0.89657 0.99533 0.98797 1.21124 0.87451 0.96580 0.94457 1.45542 1.26236 1.55373 1.09827 1.20713 0.85954 0.80156 0.83247 1.90697 1.64522 1.55618 1.31272 1.18882 0.87756 0.89851 0.85619 1.90579 1.65786 1.61634 1.30607 1.41574 1.21898 1.42386 1.07383 1.19941 1.00484 1.28147 0.94997 0.86859 1.25605 1.00059 0.97615 0.94372 1.69493 1.39903 1.43047 0.98161 0.85660 0.79949 0.78855 0.79109 1.18682 1.20259 1.20271 1.74684 0.97299 1.15675 1.20862 1.85300 1.11466 1.35793 1.65665 0.88035 0.88372 0.87625 0.88024 0.87557 0.90873 0.91205 0.75241 0.75978 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.17 16 2 C 0.18 1.55 8.51 -13.05 -0.11 1.44 16 3 N -0.48 -5.61 11.55 -9.87 -0.11 -5.73 16 4 C 0.18 2.24 7.47 -156.38 -1.17 1.07 16 5 C -0.04 -0.48 5.96 -27.88 -0.17 -0.64 16 6 C 0.13 1.86 5.66 -4.04 -0.02 1.84 16 7 N -0.71 -12.22 5.55 -60.93 -0.34 -12.56 16 8 C 0.51 11.32 7.87 -11.88 -0.09 11.23 16 9 O -0.54 -13.03 16.47 5.42 0.09 -12.94 16 10 C 0.39 9.99 7.82 -11.87 -0.09 9.90 16 11 O -0.60 -15.97 16.03 5.37 0.09 -15.88 16 12 N -0.50 -13.42 5.25 -11.59 -0.06 -13.48 16 13 C -0.31 -8.43 9.67 -15.15 -0.15 -8.58 16 14 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 15 C 0.03 0.79 5.51 -17.40 -0.10 0.70 16 16 N -0.87 -23.36 13.03 55.53 0.72 -22.64 16 17 Si 0.94 20.09 29.56 -169.99 -5.02 15.07 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 N -0.38 -4.85 12.16 30.90 0.38 -4.48 16 22 O 0.08 0.82 11.31 18.11 0.20 1.03 16 23 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.41 6.39 7.93 -40.82 -0.32 6.07 16 31 H 0.40 10.99 7.35 -40.82 -0.30 10.70 16 32 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -33.71 298.91 -4.16 -37.87 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -3.09 Total: 12.10 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: -1.52 Total: 17.13 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.59 Total: -58.88 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.38 Total: -27.80 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.71 -4.16 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231894684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.575 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds