Wall clock time and date at job start Mon Mar 30 2020 05:23:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08996 * 109.46798 * 2 1
4 4 C 1.50702 * 109.47423 * 240.00245 * 2 1 3
5 5 H 1.07998 * 119.99969 * 240.00030 * 4 2 1
6 6 C 1.37872 * 119.99879 * 59.99391 * 4 2 1
7 7 N 1.31519 * 120.00314 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00000 * 180.02562 * 6 4 2
9 9 H 1.48499 * 109.47165 * 60.00140 * 8 6 4
10 10 H 1.48500 * 109.47476 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.46914 * 300.00484 * 8 6 4
12 12 N 1.46893 * 109.46893 * 119.99730 * 2 1 3
13 13 C 1.46905 * 110.99999 * 58.96121 * 12 2 1
14 14 C 1.38345 * 111.00476 * 295.00419 * 12 2 1
15 15 N 1.32392 * 119.80377 * 67.88390 * 14 12 2
16 16 C 1.31857 * 121.80768 * 180.02562 * 15 14 12
17 17 C 1.38586 * 121.19980 * 0.02562 * 16 15 14
18 18 F 1.35103 * 120.27008 * 180.02562 * 17 16 15
19 19 C 1.38476 * 119.46295 * 359.97438 * 17 16 15
20 20 C 1.40063 * 118.34178 * 359.72665 * 19 17 16
21 21 C 1.47282 * 120.60296 * 180.28494 * 20 19 17
22 22 O 1.21531 * 120.00085 * 181.40822 * 21 20 19
23 23 O 1.34771 * 120.00030 * 1.41042 * 21 20 19
24 24 H 1.09000 * 109.47069 * 60.00264 * 1 2 3
25 25 H 1.09003 * 109.47394 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.47696 * 299.99737 * 1 2 3
27 27 H 0.97002 * 120.00020 * 179.97438 * 7 6 4
28 28 H 1.08994 * 109.47147 * 52.13430 * 13 12 2
29 29 H 1.09003 * 109.47614 * 172.14394 * 13 12 2
30 30 H 1.09007 * 109.46721 * 292.14277 * 13 12 2
31 31 H 1.08003 * 119.39932 * 179.97438 * 16 15 14
32 32 H 1.08001 * 120.82534 * 179.97438 * 19 17 16
33 33 H 0.96701 * 116.99489 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6533 -1.5884 -1.1314
6 6 1.6993 -0.2393 -2.4827
7 7 0.9435 0.8302 -2.6034
8 14 2.3214 -1.1202 -4.0079
9 1 1.8260 -2.5201 -4.0077
10 1 1.8270 -0.4198 -5.2204
11 1 3.8065 -1.1207 -4.0081
12 7 2.0196 -0.6924 1.1994
13 6 1.5283 -2.0761 1.2459
14 6 1.6702 -0.0034 2.3471
15 7 0.3982 0.0750 2.7060
16 6 0.0210 0.7217 3.7914
17 6 0.9453 1.3521 4.6092
18 9 0.5380 2.0091 5.7172
19 6 2.2899 1.3024 4.2819
20 6 2.6681 0.6045 3.1279
21 6 4.0851 0.5146 2.7366
22 8 4.3985 -0.0720 1.7194
23 8 5.0342 1.0827 3.5065
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 0.7094 1.1618 -3.4844
28 1 1.7560 -2.5743 0.3036
29 1 2.0144 -2.6070 2.0645
30 1 0.4498 -2.0736 1.4041
31 1 -1.0275 0.7615 4.0473
32 1 3.0290 1.7862 4.9033
33 1 5.9502 0.9969 3.2089
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235423743.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:51
Heat of formation + Delta-G solvation = -63.118145 kcal
Electronic energy + Delta-G solvation = -20898.379172 eV
Core-core repulsion = 17454.219174 eV
Total energy + Delta-G solvation = -3444.159998 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.101 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-48.94373 -40.70442 -39.15706 -36.80842 -35.60147 -32.83945 -32.66232 -30.13636
-28.50061 -25.59767 -25.31285 -24.89910 -22.69872 -21.48370 -19.92598 -18.23503
-17.47579 -16.82488 -16.47017 -16.12013 -15.83687 -15.67872 -15.20466 -14.90650
-14.22621 -13.91952 -13.84618 -13.17662 -13.00737 -12.57069 -12.45914 -12.10424
-11.31478 -11.22449 -11.18809 -10.85541 -10.78072 -10.71047 -10.23735 -10.14331
-10.03498 -9.84480 -9.57111 -8.74481 -8.66028 -8.36173 -7.52370 -6.00046
-4.03824 0.55999 1.04352 2.83120 3.15578 3.34914 3.38479 3.42064
3.74597 4.01123 4.19923 4.47841 4.61102 4.70474 4.88712 5.31853
5.43924 5.60027 5.68036 5.88009 6.10301 6.35850 6.44474 6.68940
6.75100 6.89436 7.05518 7.13222 7.46574 7.68028 7.80485 7.85954
8.03468 8.27210 8.30542 8.53111 8.99200 9.59628 11.06999
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.023522 B = 0.006452 C = 0.005590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1190.102983 B = 4338.390131 C = 5007.708645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.223 3.777
3 H 0.035 0.965
4 C -0.496 4.496
5 H 0.066 0.934
6 C 0.059 3.941
7 N -0.895 5.895
8 Si 0.901 3.099
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 N -0.476 5.476
13 C 0.039 3.961
14 C 0.372 3.628
15 N -0.476 5.476
16 C 0.117 3.883
17 C 0.011 3.989
18 F -0.133 7.133
19 C -0.054 4.054
20 C -0.136 4.136
21 C 0.515 3.485
22 O -0.441 6.441
23 O -0.528 6.528
24 H 0.084 0.916
25 H 0.031 0.969
26 H 0.033 0.967
27 H 0.261 0.739
28 H 0.088 0.912
29 H 0.041 0.959
30 H 0.038 0.962
31 H 0.167 0.833
32 H 0.158 0.842
33 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.917 0.666 14.103 14.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.120 3.880
3 H 0.053 0.947
4 C -0.535 4.535
5 H 0.084 0.916
6 C -0.142 4.142
7 N -0.534 5.534
8 Si 0.728 3.272
9 H -0.203 1.203
10 H -0.214 1.214
11 H -0.202 1.202
12 N -0.199 5.199
13 C -0.108 4.108
14 C 0.144 3.856
15 N -0.188 5.188
16 C -0.045 4.045
17 C -0.011 4.011
18 F -0.112 7.112
19 C -0.081 4.081
20 C -0.141 4.141
21 C 0.355 3.645
22 O -0.324 6.324
23 O -0.341 6.341
24 H 0.103 0.897
25 H 0.051 0.949
26 H 0.052 0.948
27 H 0.071 0.929
28 H 0.106 0.894
29 H 0.060 0.940
30 H 0.056 0.944
31 H 0.184 0.816
32 H 0.176 0.824
33 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges 1.414 0.216 13.204 13.281
hybrid contribution 0.544 0.239 -0.260 0.649
sum 1.958 0.455 12.944 13.100
Atomic orbital electron populations
1.22543 0.99134 1.00114 1.01350 1.19363 0.90759 0.94057 0.83854
0.94684 1.20981 1.30702 1.12673 0.89151 0.91616 1.24902 0.95181
0.95170 0.98970 1.69892 1.36919 1.22997 1.23564 0.86519 0.79246
0.79547 0.81847 1.20273 1.21418 1.20200 1.60591 1.57220 1.02488
0.99628 1.22262 0.97941 0.88147 1.02436 1.20515 0.85352 0.88497
0.91256 1.68586 1.19025 1.17353 1.13830 1.23110 1.00354 0.91920
0.89106 1.18555 0.93645 1.00988 0.87900 1.91507 1.90902 1.78932
1.49871 1.21835 0.95026 0.95631 0.95622 1.19715 0.91712 1.05346
0.97323 1.20194 0.85642 0.77115 0.81584 1.91094 1.81744 1.36749
1.22780 1.84522 1.20815 1.73869 1.54910 0.89725 0.94944 0.94819
0.92919 0.89378 0.93978 0.94383 0.81563 0.82444 0.73077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.24 8.03 37.16 0.30 -3.94 16
2 C 0.22 5.74 2.31 -68.87 -0.16 5.58 16
3 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16
4 C -0.50 -13.74 7.83 -34.44 -0.27 -14.01 16
5 H 0.07 1.82 6.80 -52.49 -0.36 1.47 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
7 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16
8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16
9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
12 N -0.48 -10.64 2.69 -174.52 -0.47 -11.11 16
13 C 0.04 0.79 8.63 60.07 0.52 1.31 16
14 C 0.37 7.26 5.28 -155.13 -0.82 6.44 16
15 N -0.48 -8.54 6.69 -12.13 -0.08 -8.62 16
16 C 0.12 1.65 11.15 -17.41 -0.19 1.46 16
17 C 0.01 0.14 7.32 -39.37 -0.29 -0.14 16
18 F -0.13 -1.65 17.28 2.25 0.04 -1.61 16
19 C -0.05 -0.74 9.71 -38.81 -0.38 -1.11 16
20 C -0.14 -2.29 5.91 -104.67 -0.62 -2.91 16
21 C 0.52 8.70 8.27 34.41 0.28 8.98 16
22 O -0.44 -9.23 15.85 -19.29 -0.31 -9.54 16
23 O -0.53 -6.40 12.75 -40.69 -0.52 -6.92 16
24 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16
25 H 0.03 0.77 6.57 -51.93 -0.34 0.43 16
26 H 0.03 0.77 5.60 -51.93 -0.29 0.48 16
27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
28 H 0.09 1.88 6.32 -51.93 -0.33 1.55 16
29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
30 H 0.04 0.75 6.24 -51.93 -0.32 0.43 16
31 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16
32 H 0.16 1.72 7.70 -52.49 -0.40 1.32 16
33 H 0.41 3.18 9.11 45.56 0.42 3.59 16
LS Contribution 284.19 15.07 4.28 4.28
Total: -1.00 -31.69 284.19 -5.51 -37.20
By element:
Atomic # 1 Polarization: 3.97 SS G_CDS: -2.35 Total: 1.62 kcal
Atomic # 6 Polarization: 4.91 SS G_CDS: -1.72 Total: 3.19 kcal
Atomic # 7 Polarization: -44.85 SS G_CDS: 0.08 Total: -44.78 kcal
Atomic # 8 Polarization: -15.63 SS G_CDS: -0.82 Total: -16.46 kcal
Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -31.69 -5.51 -37.20 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235423743.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.919 kcal
(2) G-P(sol) polarization free energy of solvation -31.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds