Wall clock time and date at job start Mon Mar 30 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46798 * 2 1 4 4 C 1.50702 * 109.47423 * 240.00245 * 2 1 3 5 5 H 1.07998 * 119.99969 * 240.00030 * 4 2 1 6 6 C 1.37872 * 119.99879 * 59.99391 * 4 2 1 7 7 N 1.31519 * 120.00314 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00000 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47165 * 60.00140 * 8 6 4 10 10 H 1.48500 * 109.47476 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46914 * 300.00484 * 8 6 4 12 12 N 1.46893 * 109.46893 * 119.99730 * 2 1 3 13 13 C 1.46905 * 110.99999 * 58.96121 * 12 2 1 14 14 C 1.38345 * 111.00476 * 295.00419 * 12 2 1 15 15 N 1.32392 * 119.80377 * 67.88390 * 14 12 2 16 16 C 1.31857 * 121.80768 * 180.02562 * 15 14 12 17 17 C 1.38586 * 121.19980 * 0.02562 * 16 15 14 18 18 F 1.35103 * 120.27008 * 180.02562 * 17 16 15 19 19 C 1.38476 * 119.46295 * 359.97438 * 17 16 15 20 20 C 1.40063 * 118.34178 * 359.72665 * 19 17 16 21 21 C 1.47282 * 120.60296 * 180.28494 * 20 19 17 22 22 O 1.21531 * 120.00085 * 181.40822 * 21 20 19 23 23 O 1.34771 * 120.00030 * 1.41042 * 21 20 19 24 24 H 1.09000 * 109.47069 * 60.00264 * 1 2 3 25 25 H 1.09003 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47696 * 299.99737 * 1 2 3 27 27 H 0.97002 * 120.00020 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47147 * 52.13430 * 13 12 2 29 29 H 1.09003 * 109.47614 * 172.14394 * 13 12 2 30 30 H 1.09007 * 109.46721 * 292.14277 * 13 12 2 31 31 H 1.08003 * 119.39932 * 179.97438 * 16 15 14 32 32 H 1.08001 * 120.82534 * 179.97438 * 19 17 16 33 33 H 0.96701 * 116.99489 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6702 -0.0034 2.3471 15 7 0.3982 0.0750 2.7060 16 6 0.0210 0.7217 3.7914 17 6 0.9453 1.3521 4.6092 18 9 0.5380 2.0091 5.7172 19 6 2.2899 1.3024 4.2819 20 6 2.6681 0.6045 3.1279 21 6 4.0851 0.5146 2.7366 22 8 4.3985 -0.0720 1.7194 23 8 5.0342 1.0827 3.5065 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1618 -3.4844 28 1 1.7560 -2.5743 0.3036 29 1 2.0144 -2.6070 2.0645 30 1 0.4498 -2.0736 1.4041 31 1 -1.0275 0.7615 4.0473 32 1 3.0290 1.7862 4.9033 33 1 5.9502 0.9969 3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235423743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:51 Heat of formation + Delta-G solvation = -63.118145 kcal Electronic energy + Delta-G solvation = -20898.379172 eV Core-core repulsion = 17454.219174 eV Total energy + Delta-G solvation = -3444.159998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.94373 -40.70442 -39.15706 -36.80842 -35.60147 -32.83945 -32.66232 -30.13636 -28.50061 -25.59767 -25.31285 -24.89910 -22.69872 -21.48370 -19.92598 -18.23503 -17.47579 -16.82488 -16.47017 -16.12013 -15.83687 -15.67872 -15.20466 -14.90650 -14.22621 -13.91952 -13.84618 -13.17662 -13.00737 -12.57069 -12.45914 -12.10424 -11.31478 -11.22449 -11.18809 -10.85541 -10.78072 -10.71047 -10.23735 -10.14331 -10.03498 -9.84480 -9.57111 -8.74481 -8.66028 -8.36173 -7.52370 -6.00046 -4.03824 0.55999 1.04352 2.83120 3.15578 3.34914 3.38479 3.42064 3.74597 4.01123 4.19923 4.47841 4.61102 4.70474 4.88712 5.31853 5.43924 5.60027 5.68036 5.88009 6.10301 6.35850 6.44474 6.68940 6.75100 6.89436 7.05518 7.13222 7.46574 7.68028 7.80485 7.85954 8.03468 8.27210 8.30542 8.53111 8.99200 9.59628 11.06999 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.006452 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.102983 B = 4338.390131 C = 5007.708645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.223 3.777 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.476 5.476 13 C 0.039 3.961 14 C 0.372 3.628 15 N -0.476 5.476 16 C 0.117 3.883 17 C 0.011 3.989 18 F -0.133 7.133 19 C -0.054 4.054 20 C -0.136 4.136 21 C 0.515 3.485 22 O -0.441 6.441 23 O -0.528 6.528 24 H 0.084 0.916 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 0.666 14.103 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.120 3.880 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.199 5.199 13 C -0.108 4.108 14 C 0.144 3.856 15 N -0.188 5.188 16 C -0.045 4.045 17 C -0.011 4.011 18 F -0.112 7.112 19 C -0.081 4.081 20 C -0.141 4.141 21 C 0.355 3.645 22 O -0.324 6.324 23 O -0.341 6.341 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.414 0.216 13.204 13.281 hybrid contribution 0.544 0.239 -0.260 0.649 sum 1.958 0.455 12.944 13.100 Atomic orbital electron populations 1.22543 0.99134 1.00114 1.01350 1.19363 0.90759 0.94057 0.83854 0.94684 1.20981 1.30702 1.12673 0.89151 0.91616 1.24902 0.95181 0.95170 0.98970 1.69892 1.36919 1.22997 1.23564 0.86519 0.79246 0.79547 0.81847 1.20273 1.21418 1.20200 1.60591 1.57220 1.02488 0.99628 1.22262 0.97941 0.88147 1.02436 1.20515 0.85352 0.88497 0.91256 1.68586 1.19025 1.17353 1.13830 1.23110 1.00354 0.91920 0.89106 1.18555 0.93645 1.00988 0.87900 1.91507 1.90902 1.78932 1.49871 1.21835 0.95026 0.95631 0.95622 1.19715 0.91712 1.05346 0.97323 1.20194 0.85642 0.77115 0.81584 1.91094 1.81744 1.36749 1.22780 1.84522 1.20815 1.73869 1.54910 0.89725 0.94944 0.94819 0.92919 0.89378 0.93978 0.94383 0.81563 0.82444 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.03 37.16 0.30 -3.94 16 2 C 0.22 5.74 2.31 -68.87 -0.16 5.58 16 3 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 4 C -0.50 -13.74 7.83 -34.44 -0.27 -14.01 16 5 H 0.07 1.82 6.80 -52.49 -0.36 1.47 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.48 -10.64 2.69 -174.52 -0.47 -11.11 16 13 C 0.04 0.79 8.63 60.07 0.52 1.31 16 14 C 0.37 7.26 5.28 -155.13 -0.82 6.44 16 15 N -0.48 -8.54 6.69 -12.13 -0.08 -8.62 16 16 C 0.12 1.65 11.15 -17.41 -0.19 1.46 16 17 C 0.01 0.14 7.32 -39.37 -0.29 -0.14 16 18 F -0.13 -1.65 17.28 2.25 0.04 -1.61 16 19 C -0.05 -0.74 9.71 -38.81 -0.38 -1.11 16 20 C -0.14 -2.29 5.91 -104.67 -0.62 -2.91 16 21 C 0.52 8.70 8.27 34.41 0.28 8.98 16 22 O -0.44 -9.23 15.85 -19.29 -0.31 -9.54 16 23 O -0.53 -6.40 12.75 -40.69 -0.52 -6.92 16 24 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 25 H 0.03 0.77 6.57 -51.93 -0.34 0.43 16 26 H 0.03 0.77 5.60 -51.93 -0.29 0.48 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.09 1.88 6.32 -51.93 -0.33 1.55 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.75 6.24 -51.93 -0.32 0.43 16 31 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.16 1.72 7.70 -52.49 -0.40 1.32 16 33 H 0.41 3.18 9.11 45.56 0.42 3.59 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -31.69 284.19 -5.51 -37.20 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.35 Total: 1.62 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.72 Total: 3.19 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.08 Total: -44.78 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.82 Total: -16.46 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.69 -5.51 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235423743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.919 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds