Wall clock time and date at job start Mon Mar 30 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1 6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.47006 * 111.00305 * 176.04542 * 12 2 1 14 14 C 1.53103 * 109.25728 * 182.38978 * 13 12 2 15 15 O 1.43009 * 109.25681 * 303.14936 * 14 13 12 16 16 C 1.43016 * 113.73789 * 58.67291 * 15 14 13 17 17 H 1.09004 * 109.50890 * 61.26203 * 16 15 14 18 18 C 1.50702 * 109.50522 * 181.38879 * 16 15 14 19 19 N 1.29027 * 124.91676 * 44.69873 * 18 16 15 20 20 C 1.31777 * 117.12342 * 179.80959 * 19 18 16 21 21 C 1.33634 * 114.50467 * 0.47376 * 20 19 18 22 22 S 1.70975 * 124.91746 * 224.99846 * 18 16 15 23 23 C 1.47021 * 110.99430 * 299.68238 * 12 2 1 24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99624 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.50918 * 302.32319 * 13 12 2 29 29 H 1.09001 * 109.50623 * 62.41444 * 13 12 2 30 30 H 1.09000 * 109.50479 * 63.08840 * 14 13 12 31 31 H 1.09001 * 109.50486 * 183.17431 * 14 13 12 32 32 H 1.08011 * 122.74978 * 180.22686 * 20 19 18 33 33 H 1.07995 * 126.04177 * 179.78993 * 21 20 19 34 34 H 1.08994 * 109.50334 * 297.53567 * 23 12 2 35 35 H 1.09000 * 109.51068 * 57.67140 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6569 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 3.4862 -0.7947 1.1869 14 6 3.9486 -1.5733 2.4214 15 8 3.4611 -0.9239 3.5986 16 6 2.0364 -0.8079 3.6440 17 1 1.5898 -1.8022 3.6362 18 6 1.6304 -0.0828 4.9012 19 7 2.1958 0.9854 5.3530 20 6 1.7124 1.4954 6.4678 21 6 0.6884 0.8143 6.9906 22 16 0.3585 -0.5606 5.9391 23 6 1.5545 -0.0215 2.4220 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1619 -3.4843 28 1 3.8071 -1.3172 0.2858 29 1 3.9208 0.2048 1.2024 30 1 3.5577 -2.5899 2.3781 31 1 5.0380 -1.6030 2.4460 32 1 2.1138 2.3884 6.9240 33 1 0.1566 1.0629 7.8970 34 1 1.9583 0.9902 2.4579 35 1 0.4653 0.0203 2.4224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249917602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:38 Heat of formation + Delta-G solvation = 16.480803 kcal Electronic energy + Delta-G solvation = -18578.190416 eV Core-core repulsion = 15703.695263 eV Total energy + Delta-G solvation = -2874.495153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91684 -38.77069 -35.74095 -32.69732 -32.22285 -29.74089 -29.10397 -26.33359 -25.69237 -24.38471 -22.88834 -21.09642 -19.76438 -19.27995 -18.13794 -16.42468 -16.11988 -15.85179 -15.27266 -14.69559 -14.51325 -14.37028 -14.00526 -13.67283 -13.38030 -13.15171 -12.59258 -12.18618 -11.66057 -11.56939 -11.22372 -11.02657 -10.95228 -10.67935 -10.46228 -10.26415 -10.01574 -9.97943 -9.60616 -9.49890 -9.22959 -8.95560 -8.76311 -8.46794 -7.32029 -6.05078 -4.10291 0.64317 1.25878 1.68664 2.83360 3.27573 3.35633 3.39238 3.96219 4.25852 4.38516 4.79801 5.07822 5.17086 5.24841 5.31233 5.33318 5.44684 5.64993 5.76608 5.90601 5.95305 6.12273 6.29633 6.49213 6.61350 6.79291 7.00360 7.05123 7.38740 7.44345 7.62513 7.77222 7.80024 8.09561 8.24652 8.49587 8.95321 9.54985 11.01864 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035215 B = 0.004741 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.922741 B = 5904.611666 C = 6300.856000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.026 3.974 14 C 0.063 3.937 15 O -0.372 6.372 16 C 0.173 3.827 17 H 0.083 0.917 18 C 0.064 3.936 19 N -0.453 5.453 20 C 0.039 3.961 21 C -0.267 4.267 22 S 0.131 5.869 23 C 0.032 3.968 24 H 0.086 0.914 25 H 0.036 0.964 26 H 0.007 0.993 27 H 0.260 0.740 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.040 0.960 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -2.422 16.011 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.103 4.103 14 C -0.014 4.014 15 O -0.291 6.291 16 C 0.111 3.889 17 H 0.101 0.899 18 C -0.215 4.215 19 N -0.167 5.167 20 C -0.112 4.112 21 C -0.406 4.406 22 S 0.385 5.615 23 C -0.098 4.098 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.192 0.808 33 H 0.194 0.806 34 H 0.059 0.941 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.836 -3.312 15.717 16.084 hybrid contribution 0.741 1.262 -0.596 1.580 sum -0.096 -2.049 15.121 15.260 Atomic orbital electron populations 1.21844 0.97547 0.99733 0.99998 1.19277 0.92434 0.92122 0.85430 0.98196 1.21148 1.31098 1.12488 0.89633 0.91728 1.24936 0.95154 0.95024 0.99069 1.69901 1.36848 1.22934 1.23410 0.86451 0.78600 0.79586 0.82828 1.19701 1.20999 1.21132 1.62405 1.08623 1.52442 1.02119 1.22649 0.89671 0.99481 0.98484 1.22825 0.98690 0.95676 0.84201 1.87992 1.18807 1.80393 1.41886 1.20466 0.83588 0.96701 0.88098 0.89922 1.26865 0.97393 0.96173 1.01066 1.66243 1.28666 1.09573 1.12210 1.21905 0.95143 1.01724 0.92458 1.27107 1.05600 1.01158 1.06726 1.83954 1.34058 1.26865 1.16658 1.22633 1.01121 0.96048 0.90004 0.89499 0.94521 0.97377 0.92963 0.88371 0.94903 0.92555 0.88773 0.80780 0.80557 0.94147 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.75 37.16 0.33 -2.90 16 2 C 0.21 5.36 2.06 -68.86 -0.14 5.22 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.51 -13.54 7.91 -34.44 -0.27 -13.81 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.53 -11.42 4.59 -227.72 -1.04 -12.46 16 13 C 0.03 0.51 5.35 -3.71 -0.02 0.49 16 14 C 0.06 1.03 7.01 37.21 0.26 1.29 16 15 O -0.37 -6.67 10.44 -35.23 -0.37 -7.04 16 16 C 0.17 2.92 3.31 -27.83 -0.09 2.83 16 17 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.06 0.99 6.29 -13.46 -0.08 0.91 16 19 N -0.45 -7.34 10.52 -11.86 -0.12 -7.47 16 20 C 0.04 0.49 11.35 -19.19 -0.22 0.27 16 21 C -0.27 -2.78 11.37 29.12 0.33 -2.45 16 22 S 0.13 1.53 23.18 -107.50 -2.49 -0.96 16 23 C 0.03 0.63 4.61 -3.71 -0.02 0.61 16 24 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.01 0.16 6.36 -51.93 -0.33 -0.17 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.10 1.99 6.15 -51.93 -0.32 1.67 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.18 1.66 8.06 -52.48 -0.42 1.23 16 33 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.57 6.19 -51.93 -0.32 1.25 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -30.15 296.79 -8.53 -38.68 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.56 Total: -0.58 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.02 Total: -6.02 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.54 Total: -44.50 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.37 Total: -7.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.49 Total: -0.96 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.15 -8.53 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249917602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds