Wall clock time and date at job start Mon Mar 30 2020 05:23:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47140 * 2 1
4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3
5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1
6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1
7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2
9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4
11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4
12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3
13 13 C 1.47006 * 111.00305 * 176.04542 * 12 2 1
14 14 C 1.53103 * 109.25728 * 182.38978 * 13 12 2
15 15 O 1.43009 * 109.25681 * 303.14936 * 14 13 12
16 16 C 1.43016 * 113.73789 * 58.67291 * 15 14 13
17 17 H 1.09004 * 109.50890 * 61.26203 * 16 15 14
18 18 C 1.50702 * 109.50522 * 181.38879 * 16 15 14
19 19 N 1.29027 * 124.91676 * 44.69873 * 18 16 15
20 20 C 1.31777 * 117.12342 * 179.80959 * 19 18 16
21 21 C 1.33634 * 114.50467 * 0.47376 * 20 19 18
22 22 S 1.70975 * 124.91746 * 224.99846 * 18 16 15
23 23 C 1.47021 * 110.99430 * 299.68238 * 12 2 1
24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3
25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47497 * 299.99624 * 1 2 3
27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4
28 28 H 1.08997 * 109.50918 * 302.32319 * 13 12 2
29 29 H 1.09001 * 109.50623 * 62.41444 * 13 12 2
30 30 H 1.09000 * 109.50479 * 63.08840 * 14 13 12
31 31 H 1.09001 * 109.50486 * 183.17431 * 14 13 12
32 32 H 1.08011 * 122.74978 * 180.22686 * 20 19 18
33 33 H 1.07995 * 126.04177 * 179.78993 * 21 20 19
34 34 H 1.08994 * 109.50334 * 297.53567 * 23 12 2
35 35 H 1.09000 * 109.51068 * 57.67140 * 23 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6569 -1.5859 -1.1315
6 6 1.6991 -0.2393 -2.4827
7 7 0.9434 0.8303 -2.6033
8 14 2.3212 -1.1203 -4.0079
9 1 3.1463 -2.2869 -3.6039
10 1 1.1659 -1.5866 -4.8161
11 1 3.1465 -0.1872 -4.8165
12 7 2.0197 -0.6926 1.1994
13 6 3.4862 -0.7947 1.1869
14 6 3.9486 -1.5733 2.4214
15 8 3.4611 -0.9239 3.5986
16 6 2.0364 -0.8079 3.6440
17 1 1.5898 -1.8022 3.6362
18 6 1.6304 -0.0828 4.9012
19 7 2.1958 0.9854 5.3530
20 6 1.7124 1.4954 6.4678
21 6 0.6884 0.8143 6.9906
22 16 0.3585 -0.5606 5.9391
23 6 1.5545 -0.0215 2.4220
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 0.7094 1.1619 -3.4843
28 1 3.8071 -1.3172 0.2858
29 1 3.9208 0.2048 1.2024
30 1 3.5577 -2.5899 2.3781
31 1 5.0380 -1.6030 2.4460
32 1 2.1138 2.3884 6.9240
33 1 0.1566 1.0629 7.8970
34 1 1.9583 0.9902 2.4579
35 1 0.4653 0.0203 2.4224
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000249917602.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:38
Heat of formation + Delta-G solvation = 16.480803 kcal
Electronic energy + Delta-G solvation = -18578.190416 eV
Core-core repulsion = 15703.695263 eV
Total energy + Delta-G solvation = -2874.495153 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.91684 -38.77069 -35.74095 -32.69732 -32.22285 -29.74089 -29.10397 -26.33359
-25.69237 -24.38471 -22.88834 -21.09642 -19.76438 -19.27995 -18.13794 -16.42468
-16.11988 -15.85179 -15.27266 -14.69559 -14.51325 -14.37028 -14.00526 -13.67283
-13.38030 -13.15171 -12.59258 -12.18618 -11.66057 -11.56939 -11.22372 -11.02657
-10.95228 -10.67935 -10.46228 -10.26415 -10.01574 -9.97943 -9.60616 -9.49890
-9.22959 -8.95560 -8.76311 -8.46794 -7.32029 -6.05078 -4.10291 0.64317
1.25878 1.68664 2.83360 3.27573 3.35633 3.39238 3.96219 4.25852
4.38516 4.79801 5.07822 5.17086 5.24841 5.31233 5.33318 5.44684
5.64993 5.76608 5.90601 5.95305 6.12273 6.29633 6.49213 6.61350
6.79291 7.00360 7.05123 7.38740 7.44345 7.62513 7.77222 7.80024
8.09561 8.24652 8.49587 8.95321 9.54985 11.01864
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.035215 B = 0.004741 C = 0.004443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 794.922741 B = 5904.611666 C = 6300.856000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.213 3.787
3 H 0.000 1.000
4 C -0.505 4.505
5 H 0.065 0.935
6 C 0.060 3.940
7 N -0.892 5.892
8 Si 0.897 3.103
9 H -0.272 1.272
10 H -0.284 1.284
11 H -0.285 1.285
12 N -0.530 5.530
13 C 0.026 3.974
14 C 0.063 3.937
15 O -0.372 6.372
16 C 0.173 3.827
17 H 0.083 0.917
18 C 0.064 3.936
19 N -0.453 5.453
20 C 0.039 3.961
21 C -0.267 4.267
22 S 0.131 5.869
23 C 0.032 3.968
24 H 0.086 0.914
25 H 0.036 0.964
26 H 0.007 0.993
27 H 0.260 0.740
28 H 0.098 0.902
29 H 0.033 0.967
30 H 0.056 0.944
31 H 0.094 0.906
32 H 0.175 0.825
33 H 0.177 0.823
34 H 0.040 0.960
35 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.413 -2.422 16.011 16.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.107 3.893
3 H 0.018 0.982
4 C -0.544 4.544
5 H 0.083 0.917
6 C -0.142 4.142
7 N -0.531 5.531
8 Si 0.725 3.275
9 H -0.197 1.197
10 H -0.210 1.210
11 H -0.211 1.211
12 N -0.256 5.256
13 C -0.103 4.103
14 C -0.014 4.014
15 O -0.291 6.291
16 C 0.111 3.889
17 H 0.101 0.899
18 C -0.215 4.215
19 N -0.167 5.167
20 C -0.112 4.112
21 C -0.406 4.406
22 S 0.385 5.615
23 C -0.098 4.098
24 H 0.105 0.895
25 H 0.055 0.945
26 H 0.026 0.974
27 H 0.070 0.930
28 H 0.116 0.884
29 H 0.051 0.949
30 H 0.074 0.926
31 H 0.112 0.888
32 H 0.192 0.808
33 H 0.194 0.806
34 H 0.059 0.941
35 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -0.836 -3.312 15.717 16.084
hybrid contribution 0.741 1.262 -0.596 1.580
sum -0.096 -2.049 15.121 15.260
Atomic orbital electron populations
1.21844 0.97547 0.99733 0.99998 1.19277 0.92434 0.92122 0.85430
0.98196 1.21148 1.31098 1.12488 0.89633 0.91728 1.24936 0.95154
0.95024 0.99069 1.69901 1.36848 1.22934 1.23410 0.86451 0.78600
0.79586 0.82828 1.19701 1.20999 1.21132 1.62405 1.08623 1.52442
1.02119 1.22649 0.89671 0.99481 0.98484 1.22825 0.98690 0.95676
0.84201 1.87992 1.18807 1.80393 1.41886 1.20466 0.83588 0.96701
0.88098 0.89922 1.26865 0.97393 0.96173 1.01066 1.66243 1.28666
1.09573 1.12210 1.21905 0.95143 1.01724 0.92458 1.27107 1.05600
1.01158 1.06726 1.83954 1.34058 1.26865 1.16658 1.22633 1.01121
0.96048 0.90004 0.89499 0.94521 0.97377 0.92963 0.88371 0.94903
0.92555 0.88773 0.80780 0.80557 0.94147 0.89837
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.22 8.75 37.16 0.33 -2.90 16
2 C 0.21 5.36 2.06 -68.86 -0.14 5.22 16
3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16
4 C -0.51 -13.54 7.91 -34.44 -0.27 -13.81 16
5 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16
6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16
7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16
8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
12 N -0.53 -11.42 4.59 -227.72 -1.04 -12.46 16
13 C 0.03 0.51 5.35 -3.71 -0.02 0.49 16
14 C 0.06 1.03 7.01 37.21 0.26 1.29 16
15 O -0.37 -6.67 10.44 -35.23 -0.37 -7.04 16
16 C 0.17 2.92 3.31 -27.83 -0.09 2.83 16
17 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
18 C 0.06 0.99 6.29 -13.46 -0.08 0.91 16
19 N -0.45 -7.34 10.52 -11.86 -0.12 -7.47 16
20 C 0.04 0.49 11.35 -19.19 -0.22 0.27 16
21 C -0.27 -2.78 11.37 29.12 0.33 -2.45 16
22 S 0.13 1.53 23.18 -107.50 -2.49 -0.96 16
23 C 0.03 0.63 4.61 -3.71 -0.02 0.61 16
24 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16
25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.01 0.16 6.36 -51.93 -0.33 -0.17 16
27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
28 H 0.10 1.99 6.15 -51.93 -0.32 1.67 16
29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16
32 H 0.18 1.66 8.06 -52.48 -0.42 1.23 16
33 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16
34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16
35 H 0.08 1.57 6.19 -51.93 -0.32 1.25 16
LS Contribution 296.79 15.07 4.47 4.47
Total: -1.00 -30.15 296.79 -8.53 -38.68
By element:
Atomic # 1 Polarization: 3.99 SS G_CDS: -4.56 Total: -0.58 kcal
Atomic # 6 Polarization: -6.00 SS G_CDS: -0.02 Total: -6.02 kcal
Atomic # 7 Polarization: -43.96 SS G_CDS: -0.54 Total: -44.50 kcal
Atomic # 8 Polarization: -6.67 SS G_CDS: -0.37 Total: -7.04 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Atomic # 16 Polarization: 1.53 SS G_CDS: -2.49 Total: -0.96 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -30.15 -8.53 -38.68 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249917602.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal
(2) G-P(sol) polarization free energy of solvation -30.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds