Wall clock time and date at job start Mon Mar 30 2020 05:23:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47140 * 2 1
4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3
5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1
6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1
7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2
9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4
11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4
12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3
13 13 C 1.47006 * 111.00305 * 176.04542 * 12 2 1
14 14 C 1.53103 * 109.25728 * 182.38978 * 13 12 2
15 15 O 1.43009 * 109.25681 * 303.14936 * 14 13 12
16 16 C 1.43016 * 113.73789 * 58.67291 * 15 14 13
17 17 H 1.09004 * 109.50890 * 61.26203 * 16 15 14
18 18 C 1.50702 * 109.50522 * 181.38879 * 16 15 14
19 19 N 1.29027 * 124.91676 * 44.69873 * 18 16 15
20 20 C 1.31777 * 117.12342 * 179.80959 * 19 18 16
21 21 C 1.33634 * 114.50467 * 0.47376 * 20 19 18
22 22 S 1.70975 * 124.91746 * 224.99846 * 18 16 15
23 23 C 1.47021 * 110.99430 * 299.68238 * 12 2 1
24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3
25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47497 * 299.99624 * 1 2 3
27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4
28 28 H 1.08997 * 109.50918 * 302.32319 * 13 12 2
29 29 H 1.09001 * 109.50623 * 62.41444 * 13 12 2
30 30 H 1.09000 * 109.50479 * 63.08840 * 14 13 12
31 31 H 1.09001 * 109.50486 * 183.17431 * 14 13 12
32 32 H 1.08011 * 122.74978 * 180.22686 * 20 19 18
33 33 H 1.07995 * 126.04177 * 179.78993 * 21 20 19
34 34 H 1.08994 * 109.50334 * 297.53567 * 23 12 2
35 35 H 1.09000 * 109.51068 * 57.67140 * 23 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6569 -1.5859 -1.1315
6 6 1.6991 -0.2393 -2.4827
7 7 0.9434 0.8303 -2.6033
8 14 2.3212 -1.1203 -4.0079
9 1 3.1463 -2.2869 -3.6039
10 1 1.1659 -1.5866 -4.8161
11 1 3.1465 -0.1872 -4.8165
12 7 2.0197 -0.6926 1.1994
13 6 3.4862 -0.7947 1.1869
14 6 3.9486 -1.5733 2.4214
15 8 3.4611 -0.9239 3.5986
16 6 2.0364 -0.8079 3.6440
17 1 1.5898 -1.8022 3.6362
18 6 1.6304 -0.0828 4.9012
19 7 2.1958 0.9854 5.3530
20 6 1.7124 1.4954 6.4678
21 6 0.6884 0.8143 6.9906
22 16 0.3585 -0.5606 5.9391
23 6 1.5545 -0.0215 2.4220
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 0.8900
27 1 0.7094 1.1619 -3.4843
28 1 3.8071 -1.3172 0.2858
29 1 3.9208 0.2048 1.2024
30 1 3.5577 -2.5899 2.3781
31 1 5.0380 -1.6030 2.4460
32 1 2.1138 2.3884 6.9240
33 1 0.1566 1.0629 7.8970
34 1 1.9583 0.9902 2.4579
35 1 0.4653 0.0203 2.4224
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000249917602.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:38
Heat of formation + Delta-G solvation = -5.021602 kcal
Electronic energy + Delta-G solvation = -18579.122830 eV
Core-core repulsion = 15703.695263 eV
Total energy + Delta-G solvation = -2875.427567 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.11896 -40.07399 -37.44761 -34.64217 -33.49227 -31.49302 -30.38777 -27.75424
-27.56065 -25.89295 -24.22446 -22.62769 -21.40470 -20.54930 -19.20534 -18.42141
-17.58367 -17.19583 -16.53581 -16.27356 -15.99463 -15.81571 -15.39566 -15.06111
-14.94736 -14.40020 -14.32336 -13.58794 -13.53491 -12.93193 -12.80411 -12.56914
-12.53616 -12.41180 -12.32763 -12.16056 -11.94814 -11.52361 -10.93200 -10.74539
-10.56810 -10.53946 -10.35179 -9.86399 -9.14796 -8.13177 -6.25881 -0.33163
0.30419 0.75840 1.42631 1.44330 1.56136 1.83942 2.41357 2.77827
2.99275 3.16599 3.33827 3.85012 3.94071 4.08169 4.19362 4.31230
4.40265 4.46803 4.53798 4.56996 4.72505 4.79460 4.90951 4.97626
5.02463 5.13519 5.21676 5.43924 5.67831 5.69933 6.05952 6.18582
6.24944 6.56300 6.82298 6.86844 7.43523 8.93644
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.035215 B = 0.004741 C = 0.004443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 794.922741 B = 5904.611666 C = 6300.856000
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.216 3.784
3 H -0.044 1.044
4 C -0.518 4.518
5 H 0.066 0.934
6 C 0.011 3.989
7 N -0.922 5.922
8 Si 0.964 3.036
9 H -0.263 1.263
10 H -0.280 1.280
11 H -0.284 1.284
12 N -0.529 5.529
13 C 0.025 3.975
14 C 0.071 3.929
15 O -0.384 6.384
16 C 0.179 3.821
17 H 0.099 0.901
18 C 0.019 3.981
19 N -0.489 5.489
20 C 0.013 3.987
21 C -0.241 4.241
22 S 0.180 5.820
23 C 0.039 3.961
24 H 0.061 0.939
25 H 0.039 0.961
26 H 0.026 0.974
27 H 0.262 0.738
28 H 0.090 0.910
29 H 0.010 0.990
30 H 0.073 0.927
31 H 0.122 0.878
32 H 0.197 0.803
33 H 0.218 0.782
34 H 0.012 0.988
35 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.759 -3.815 17.731 18.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.110 3.890
3 H -0.027 1.027
4 C -0.557 4.557
5 H 0.084 0.916
6 C -0.188 4.188
7 N -0.562 5.562
8 Si 0.789 3.211
9 H -0.187 1.187
10 H -0.206 1.206
11 H -0.210 1.210
12 N -0.255 5.255
13 C -0.103 4.103
14 C -0.006 4.006
15 O -0.303 6.303
16 C 0.118 3.882
17 H 0.116 0.884
18 C -0.259 4.259
19 N -0.205 5.205
20 C -0.138 4.138
21 C -0.380 4.380
22 S 0.433 5.567
23 C -0.091 4.091
24 H 0.080 0.920
25 H 0.059 0.941
26 H 0.045 0.955
27 H 0.071 0.929
28 H 0.108 0.892
29 H 0.028 0.972
30 H 0.091 0.909
31 H 0.139 0.861
32 H 0.214 0.786
33 H 0.234 0.766
34 H 0.030 0.970
35 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -1.174 -4.719 17.451 18.116
hybrid contribution 0.794 1.758 -1.007 2.176
sum -0.380 -2.960 16.444 16.713
Atomic orbital electron populations
1.21653 0.96876 0.99715 0.99669 1.19091 0.92989 0.89933 0.87022
1.02699 1.21419 1.31182 1.12572 0.90499 0.91556 1.25758 0.95282
0.95685 1.02084 1.70039 1.37832 1.24236 1.24097 0.85409 0.78114
0.78601 0.78927 1.18675 1.20558 1.21001 1.62373 1.09770 1.51581
1.01728 1.22698 0.88508 0.98780 1.00306 1.22884 1.00317 0.95453
0.81945 1.87993 1.19647 1.80620 1.42069 1.20402 0.82999 0.97060
0.87780 0.88362 1.26617 0.99966 0.97236 1.02038 1.66199 1.30201
1.10230 1.13856 1.22274 0.96354 1.03071 0.92103 1.27643 1.04066
0.99324 1.06945 1.83721 1.31260 1.26557 1.15142 1.22609 1.01084
0.95009 0.90446 0.91984 0.94144 0.95530 0.92905 0.89164 0.97195
0.90851 0.86056 0.78626 0.76567 0.96996 0.89583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.99 8.75 71.98 0.63 -5.36 16
2 C 0.22 11.29 2.06 44.17 0.09 11.38 16
3 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16
4 C -0.52 -28.32 7.91 25.60 0.20 -28.11 16
5 H 0.07 3.53 6.39 -2.91 -0.02 3.51 16
6 C 0.01 0.58 5.30 84.66 0.45 1.03 16
7 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16
8 Si 0.96 43.22 29.54 68.60 2.03 45.24 16
9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16
10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
12 N -0.53 -23.27 4.59 -874.36 -4.01 -27.28 16
13 C 0.03 1.03 5.35 86.32 0.46 1.49 16
14 C 0.07 2.23 7.01 72.02 0.50 2.73 16
15 O -0.38 -13.55 10.44 -148.98 -1.55 -15.11 16
16 C 0.18 5.95 3.31 29.88 0.10 6.05 16
17 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16
18 C 0.02 0.56 6.29 88.52 0.56 1.11 16
19 N -0.49 -15.58 10.52 -191.44 -2.01 -17.60 16
20 C 0.01 0.29 11.35 83.66 0.95 1.24 16
21 C -0.24 -4.18 11.37 66.77 0.76 -3.42 16
22 S 0.18 3.74 23.18 -56.49 -1.31 2.43 16
23 C 0.04 1.53 4.61 86.31 0.40 1.93 16
24 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16
25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16
26 H 0.03 1.16 6.36 -2.39 -0.02 1.15 16
27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16
28 H 0.09 3.73 6.15 -2.39 -0.01 3.71 16
29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
31 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16
32 H 0.20 3.34 8.06 -2.90 -0.02 3.31 16
33 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16
34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.09 3.28 6.19 -2.39 -0.01 3.26 16
Total: -1.00 -67.04 296.79 -0.43 -67.47
By element:
Atomic # 1 Polarization: 6.84 SS G_CDS: 1.09 Total: 7.93 kcal
Atomic # 6 Polarization: -15.03 SS G_CDS: 5.10 Total: -9.93 kcal
Atomic # 7 Polarization: -92.25 SS G_CDS: -5.78 Total: -98.03 kcal
Atomic # 8 Polarization: -13.55 SS G_CDS: -1.55 Total: -15.11 kcal
Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal
Atomic # 16 Polarization: 3.74 SS G_CDS: -1.31 Total: 2.43 kcal
Total: -67.04 -0.43 -67.47 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249917602.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.448 kcal
(2) G-P(sol) polarization free energy of solvation -67.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds