Wall clock time and date at job start Mon Mar 30 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1 6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.47006 * 111.00305 * 176.04542 * 12 2 1 14 14 C 1.53103 * 109.25728 * 182.38978 * 13 12 2 15 15 O 1.43009 * 109.25681 * 303.14936 * 14 13 12 16 16 C 1.43016 * 113.73789 * 58.67291 * 15 14 13 17 17 H 1.09004 * 109.50890 * 61.26203 * 16 15 14 18 18 C 1.50702 * 109.50522 * 181.38879 * 16 15 14 19 19 N 1.29027 * 124.91676 * 44.69873 * 18 16 15 20 20 C 1.31777 * 117.12342 * 179.80959 * 19 18 16 21 21 C 1.33634 * 114.50467 * 0.47376 * 20 19 18 22 22 S 1.70975 * 124.91746 * 224.99846 * 18 16 15 23 23 C 1.47021 * 110.99430 * 299.68238 * 12 2 1 24 24 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 299.99624 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.50918 * 302.32319 * 13 12 2 29 29 H 1.09001 * 109.50623 * 62.41444 * 13 12 2 30 30 H 1.09000 * 109.50479 * 63.08840 * 14 13 12 31 31 H 1.09001 * 109.50486 * 183.17431 * 14 13 12 32 32 H 1.08011 * 122.74978 * 180.22686 * 20 19 18 33 33 H 1.07995 * 126.04177 * 179.78993 * 21 20 19 34 34 H 1.08994 * 109.50334 * 297.53567 * 23 12 2 35 35 H 1.09000 * 109.51068 * 57.67140 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6569 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 3.4862 -0.7947 1.1869 14 6 3.9486 -1.5733 2.4214 15 8 3.4611 -0.9239 3.5986 16 6 2.0364 -0.8079 3.6440 17 1 1.5898 -1.8022 3.6362 18 6 1.6304 -0.0828 4.9012 19 7 2.1958 0.9854 5.3530 20 6 1.7124 1.4954 6.4678 21 6 0.6884 0.8143 6.9906 22 16 0.3585 -0.5606 5.9391 23 6 1.5545 -0.0215 2.4220 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1619 -3.4843 28 1 3.8071 -1.3172 0.2858 29 1 3.9208 0.2048 1.2024 30 1 3.5577 -2.5899 2.3781 31 1 5.0380 -1.6030 2.4460 32 1 2.1138 2.3884 6.9240 33 1 0.1566 1.0629 7.8970 34 1 1.9583 0.9902 2.4579 35 1 0.4653 0.0203 2.4224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249917602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:38 Heat of formation + Delta-G solvation = -5.021602 kcal Electronic energy + Delta-G solvation = -18579.122830 eV Core-core repulsion = 15703.695263 eV Total energy + Delta-G solvation = -2875.427567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11896 -40.07399 -37.44761 -34.64217 -33.49227 -31.49302 -30.38777 -27.75424 -27.56065 -25.89295 -24.22446 -22.62769 -21.40470 -20.54930 -19.20534 -18.42141 -17.58367 -17.19583 -16.53581 -16.27356 -15.99463 -15.81571 -15.39566 -15.06111 -14.94736 -14.40020 -14.32336 -13.58794 -13.53491 -12.93193 -12.80411 -12.56914 -12.53616 -12.41180 -12.32763 -12.16056 -11.94814 -11.52361 -10.93200 -10.74539 -10.56810 -10.53946 -10.35179 -9.86399 -9.14796 -8.13177 -6.25881 -0.33163 0.30419 0.75840 1.42631 1.44330 1.56136 1.83942 2.41357 2.77827 2.99275 3.16599 3.33827 3.85012 3.94071 4.08169 4.19362 4.31230 4.40265 4.46803 4.53798 4.56996 4.72505 4.79460 4.90951 4.97626 5.02463 5.13519 5.21676 5.43924 5.67831 5.69933 6.05952 6.18582 6.24944 6.56300 6.82298 6.86844 7.43523 8.93644 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035215 B = 0.004741 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.922741 B = 5904.611666 C = 6300.856000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.216 3.784 3 H -0.044 1.044 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.529 5.529 13 C 0.025 3.975 14 C 0.071 3.929 15 O -0.384 6.384 16 C 0.179 3.821 17 H 0.099 0.901 18 C 0.019 3.981 19 N -0.489 5.489 20 C 0.013 3.987 21 C -0.241 4.241 22 S 0.180 5.820 23 C 0.039 3.961 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.262 0.738 28 H 0.090 0.910 29 H 0.010 0.990 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.197 0.803 33 H 0.218 0.782 34 H 0.012 0.988 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -3.815 17.731 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.110 3.890 3 H -0.027 1.027 4 C -0.557 4.557 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.103 4.103 14 C -0.006 4.006 15 O -0.303 6.303 16 C 0.118 3.882 17 H 0.116 0.884 18 C -0.259 4.259 19 N -0.205 5.205 20 C -0.138 4.138 21 C -0.380 4.380 22 S 0.433 5.567 23 C -0.091 4.091 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.214 0.786 33 H 0.234 0.766 34 H 0.030 0.970 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.174 -4.719 17.451 18.116 hybrid contribution 0.794 1.758 -1.007 2.176 sum -0.380 -2.960 16.444 16.713 Atomic orbital electron populations 1.21653 0.96876 0.99715 0.99669 1.19091 0.92989 0.89933 0.87022 1.02699 1.21419 1.31182 1.12572 0.90499 0.91556 1.25758 0.95282 0.95685 1.02084 1.70039 1.37832 1.24236 1.24097 0.85409 0.78114 0.78601 0.78927 1.18675 1.20558 1.21001 1.62373 1.09770 1.51581 1.01728 1.22698 0.88508 0.98780 1.00306 1.22884 1.00317 0.95453 0.81945 1.87993 1.19647 1.80620 1.42069 1.20402 0.82999 0.97060 0.87780 0.88362 1.26617 0.99966 0.97236 1.02038 1.66199 1.30201 1.10230 1.13856 1.22274 0.96354 1.03071 0.92103 1.27643 1.04066 0.99324 1.06945 1.83721 1.31260 1.26557 1.15142 1.22609 1.01084 0.95009 0.90446 0.91984 0.94144 0.95530 0.92905 0.89164 0.97195 0.90851 0.86056 0.78626 0.76567 0.96996 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.75 71.98 0.63 -5.36 16 2 C 0.22 11.29 2.06 44.17 0.09 11.38 16 3 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 4 C -0.52 -28.32 7.91 25.60 0.20 -28.11 16 5 H 0.07 3.53 6.39 -2.91 -0.02 3.51 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 8 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 N -0.53 -23.27 4.59 -874.36 -4.01 -27.28 16 13 C 0.03 1.03 5.35 86.32 0.46 1.49 16 14 C 0.07 2.23 7.01 72.02 0.50 2.73 16 15 O -0.38 -13.55 10.44 -148.98 -1.55 -15.11 16 16 C 0.18 5.95 3.31 29.88 0.10 6.05 16 17 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 18 C 0.02 0.56 6.29 88.52 0.56 1.11 16 19 N -0.49 -15.58 10.52 -191.44 -2.01 -17.60 16 20 C 0.01 0.29 11.35 83.66 0.95 1.24 16 21 C -0.24 -4.18 11.37 66.77 0.76 -3.42 16 22 S 0.18 3.74 23.18 -56.49 -1.31 2.43 16 23 C 0.04 1.53 4.61 86.31 0.40 1.93 16 24 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.16 6.36 -2.39 -0.02 1.15 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.09 3.73 6.15 -2.39 -0.01 3.71 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.20 3.34 8.06 -2.90 -0.02 3.31 16 33 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 3.28 6.19 -2.39 -0.01 3.26 16 Total: -1.00 -67.04 296.79 -0.43 -67.47 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.09 Total: 7.93 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.10 Total: -9.93 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.78 Total: -98.03 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.55 Total: -15.11 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.31 Total: 2.43 kcal Total: -67.04 -0.43 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249917602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.448 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds