Wall clock time and date at job start Mon Mar 30 2020 05:23:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3
5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1
6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1
7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4
10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4
12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3
13 13 C 1.47017 * 110.99427 * 306.04447 * 12 2 1
14 14 C 1.53103 * 109.25521 * 182.39053 * 13 12 2
15 15 O 1.43015 * 109.25801 * 303.15179 * 14 13 12
16 16 C 1.43020 * 113.73915 * 58.67089 * 15 14 13
17 17 H 1.08999 * 109.50272 * 61.30635 * 16 15 14
18 18 C 1.50703 * 109.50551 * 181.39206 * 16 15 14
19 19 N 1.29023 * 124.91306 * 44.69443 * 18 16 15
20 20 C 1.31782 * 117.12305 * 179.80982 * 19 18 16
21 21 C 1.33648 * 114.49632 * 0.47556 * 20 19 18
22 22 S 1.70971 * 124.91367 * 224.99798 * 18 16 15
23 23 C 1.47007 * 111.00077 * 69.67646 * 12 2 1
24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4
28 28 H 1.09000 * 109.50427 * 302.32460 * 13 12 2
29 29 H 1.08999 * 109.50918 * 62.45798 * 13 12 2
30 30 H 1.09002 * 109.50255 * 63.08974 * 14 13 12
31 31 H 1.08997 * 109.50327 * 183.17091 * 14 13 12
32 32 H 1.07996 * 122.75540 * 180.23002 * 20 19 18
33 33 H 1.07999 * 126.03620 * 179.78468 * 21 20 19
34 34 H 1.09003 * 109.51122 * 297.54558 * 23 12 2
35 35 H 1.09002 * 109.50869 * 57.67362 * 23 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9436 0.8301 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.8065 -1.1210 4.0080
10 1 1.8261 -0.4208 5.2204
11 1 1.8261 -2.5204 4.0076
12 7 2.0197 -0.6924 -1.1995
13 6 1.4339 -2.0364 -1.3080
14 6 2.0151 -2.7430 -2.5356
15 8 1.7669 -1.9487 -3.6986
16 6 2.3240 -0.6334 -3.6272
17 1 3.4075 -0.7020 -3.5302
18 6 1.9782 0.1283 -4.8808
19 7 0.8130 0.1492 -5.4344
20 6 0.6805 0.8717 -6.5285
21 6 1.7988 1.4869 -6.9251
22 16 3.0750 1.0839 -5.7791
23 6 1.7459 0.0945 -2.4107
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 0.7096 1.1617 3.4844
28 1 1.6705 -2.6100 -0.4118
29 1 0.3521 -1.9546 -1.4134
30 1 3.0896 -2.8729 -2.4059
31 1 1.5421 -3.7181 -2.6521
32 1 -0.2539 0.9564 -7.0633
33 1 1.9018 2.1197 -7.7942
34 1 0.6691 0.2105 -2.5338
35 1 2.2103 1.0764 -2.3196
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000249917605.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:41
Heat of formation + Delta-G solvation = 16.718685 kcal
Electronic energy + Delta-G solvation = -18621.051122 eV
Core-core repulsion = 15746.566284 eV
Total energy + Delta-G solvation = -2874.484838 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.93224 -38.82683 -35.85839 -32.67528 -32.19650 -29.40103 -29.18111 -26.42653
-25.36515 -24.43510 -23.20365 -21.50885 -19.75836 -18.99806 -18.13191 -16.37877
-16.10666 -15.63687 -15.25128 -14.72256 -14.52320 -14.36404 -14.09973 -13.68536
-13.46542 -12.91284 -12.76914 -12.05023 -11.70842 -11.56451 -11.26241 -11.05630
-10.84069 -10.76989 -10.62575 -10.31895 -10.03308 -9.89335 -9.60911 -9.50895
-9.26965 -8.98630 -8.76366 -8.40648 -7.28215 -6.03149 -4.07650 0.64288
1.25902 1.68677 2.83268 3.31347 3.35997 3.38383 3.96121 4.25924
4.39886 4.81958 5.07812 5.17659 5.26528 5.30720 5.33436 5.44635
5.64004 5.76758 5.90353 5.95121 6.12198 6.29152 6.48872 6.56354
6.77008 6.84970 7.08891 7.31413 7.43801 7.66506 7.78013 7.79839
8.04382 8.30300 8.50703 8.97129 9.57400 11.03892
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.034682 B = 0.004680 C = 0.004507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 807.140591 B = 5981.053642 C = 6211.512460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.213 3.787
3 H 0.040 0.960
4 C -0.501 4.501
5 H 0.062 0.938
6 C 0.059 3.941
7 N -0.894 5.894
8 Si 0.898 3.102
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.278 1.278
12 N -0.527 5.527
13 C 0.023 3.977
14 C 0.062 3.938
15 O -0.372 6.372
16 C 0.173 3.827
17 H 0.083 0.917
18 C 0.064 3.936
19 N -0.453 5.453
20 C 0.039 3.961
21 C -0.267 4.267
22 S 0.131 5.869
23 C 0.033 3.967
24 H 0.089 0.911
25 H 0.032 0.968
26 H 0.008 0.992
27 H 0.261 0.739
28 H 0.094 0.906
29 H 0.040 0.960
30 H 0.056 0.944
31 H 0.094 0.906
32 H 0.175 0.825
33 H 0.177 0.823
34 H 0.046 0.954
35 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.842 -0.392 -15.869 16.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.107 3.893
3 H 0.058 0.942
4 C -0.539 4.539
5 H 0.080 0.920
6 C -0.142 4.142
7 N -0.533 5.533
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.214 1.214
11 H -0.203 1.203
12 N -0.252 5.252
13 C -0.106 4.106
14 C -0.014 4.014
15 O -0.290 6.290
16 C 0.112 3.888
17 H 0.101 0.899
18 C -0.215 4.215
19 N -0.167 5.167
20 C -0.112 4.112
21 C -0.406 4.406
22 S 0.385 5.615
23 C -0.098 4.098
24 H 0.107 0.893
25 H 0.051 0.949
26 H 0.027 0.973
27 H 0.071 0.929
28 H 0.112 0.888
29 H 0.058 0.942
30 H 0.074 0.926
31 H 0.112 0.888
32 H 0.192 0.808
33 H 0.194 0.806
34 H 0.064 0.936
35 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 3.804 -0.444 -15.495 15.961
hybrid contribution -1.407 -0.037 0.471 1.484
sum 2.397 -0.480 -15.024 15.221
Atomic orbital electron populations
1.22398 1.00601 0.99533 1.00589 1.19318 0.89969 0.94475 0.85549
0.94209 1.21022 1.30804 1.12608 0.89510 0.91955 1.24926 0.95163
0.95115 0.99009 1.69875 1.36863 1.22973 1.23584 0.86565 0.79204
0.79598 0.82046 1.20211 1.21402 1.20339 1.62623 1.58527 1.02000
1.02073 1.22669 0.97411 0.92254 0.98227 1.22825 1.00268 0.93648
0.84707 1.87995 1.77867 1.23199 1.39962 1.20463 0.97272 0.83224
0.87887 0.89929 1.26868 0.91712 1.01740 1.01195 1.66243 1.22195
1.18927 1.09314 1.21905 0.99649 0.95812 0.93869 1.27112 0.96419
1.10638 1.06435 1.83958 1.15256 1.43922 1.18372 1.22589 0.99695
0.97387 0.90117 0.89255 0.94923 0.97348 0.92894 0.88806 0.94204
0.92588 0.88825 0.80793 0.80564 0.93556 0.90473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.21 8.21 37.16 0.31 -3.91 16
2 C 0.21 5.30 2.31 -68.86 -0.16 5.14 16
3 H 0.04 1.09 8.04 -51.93 -0.42 0.67 16
4 C -0.50 -13.40 7.94 -34.44 -0.27 -13.67 16
5 H 0.06 1.65 7.12 -52.49 -0.37 1.28 16
6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16
7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16
8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16
9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
12 N -0.53 -11.25 4.67 -227.72 -1.06 -12.32 16
13 C 0.02 0.44 4.82 -3.71 -0.02 0.43 16
14 C 0.06 1.01 7.01 37.21 0.26 1.27 16
15 O -0.37 -6.62 10.44 -35.23 -0.37 -6.99 16
16 C 0.17 2.90 3.31 -27.83 -0.09 2.81 16
17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
18 C 0.06 0.98 6.29 -13.46 -0.08 0.90 16
19 N -0.45 -7.30 10.52 -11.86 -0.12 -7.43 16
20 C 0.04 0.49 11.35 -19.18 -0.22 0.27 16
21 C -0.27 -2.77 11.37 29.12 0.33 -2.44 16
22 S 0.13 1.53 23.18 -107.50 -2.49 -0.96 16
23 C 0.03 0.62 4.65 -3.72 -0.02 0.61 16
24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16
25 H 0.03 0.77 6.38 -51.93 -0.33 0.44 16
26 H 0.01 0.18 6.73 -51.93 -0.35 -0.17 16
27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
28 H 0.09 1.89 6.80 -51.93 -0.35 1.54 16
29 H 0.04 0.82 6.37 -51.93 -0.33 0.49 16
30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
32 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16
33 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16
34 H 0.05 0.97 6.72 -51.93 -0.35 0.62 16
35 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16
LS Contribution 294.71 15.07 4.44 4.44
Total: -1.00 -29.86 294.71 -8.55 -38.41
By element:
Atomic # 1 Polarization: 5.00 SS G_CDS: -4.49 Total: 0.51 kcal
Atomic # 6 Polarization: -7.02 SS G_CDS: -0.06 Total: -7.08 kcal
Atomic # 7 Polarization: -43.74 SS G_CDS: -0.56 Total: -44.30 kcal
Atomic # 8 Polarization: -6.62 SS G_CDS: -0.37 Total: -6.99 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Atomic # 16 Polarization: 1.53 SS G_CDS: -2.49 Total: -0.96 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -29.86 -8.55 -38.41 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249917605.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.127 kcal
(2) G-P(sol) polarization free energy of solvation -29.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds