Wall clock time and date at job start Mon Mar 30 2020 05:23:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47533 * 2 1
4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3
5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1
6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1
7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4
10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4
12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3
13 13 C 1.47017 * 110.99427 * 306.04447 * 12 2 1
14 14 C 1.53103 * 109.25521 * 182.39053 * 13 12 2
15 15 O 1.43015 * 109.25801 * 303.15179 * 14 13 12
16 16 C 1.43020 * 113.73915 * 58.67089 * 15 14 13
17 17 H 1.08999 * 109.50272 * 61.30635 * 16 15 14
18 18 C 1.50703 * 109.50551 * 181.39206 * 16 15 14
19 19 N 1.29023 * 124.91306 * 44.69443 * 18 16 15
20 20 C 1.31782 * 117.12305 * 179.80982 * 19 18 16
21 21 C 1.33648 * 114.49632 * 0.47556 * 20 19 18
22 22 S 1.70971 * 124.91367 * 224.99798 * 18 16 15
23 23 C 1.47007 * 111.00077 * 69.67646 * 12 2 1
24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3
25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3
27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4
28 28 H 1.09000 * 109.50427 * 302.32460 * 13 12 2
29 29 H 1.08999 * 109.50918 * 62.45798 * 13 12 2
30 30 H 1.09002 * 109.50255 * 63.08974 * 14 13 12
31 31 H 1.08997 * 109.50327 * 183.17091 * 14 13 12
32 32 H 1.07996 * 122.75540 * 180.23002 * 20 19 18
33 33 H 1.07999 * 126.03620 * 179.78468 * 21 20 19
34 34 H 1.09003 * 109.51122 * 297.54558 * 23 12 2
35 35 H 1.09002 * 109.50869 * 57.67362 * 23 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9436 0.8301 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.8065 -1.1210 4.0080
10 1 1.8261 -0.4208 5.2204
11 1 1.8261 -2.5204 4.0076
12 7 2.0197 -0.6924 -1.1995
13 6 1.4339 -2.0364 -1.3080
14 6 2.0151 -2.7430 -2.5356
15 8 1.7669 -1.9487 -3.6986
16 6 2.3240 -0.6334 -3.6272
17 1 3.4075 -0.7020 -3.5302
18 6 1.9782 0.1283 -4.8808
19 7 0.8130 0.1492 -5.4344
20 6 0.6805 0.8717 -6.5285
21 6 1.7988 1.4869 -6.9251
22 16 3.0750 1.0839 -5.7791
23 6 1.7459 0.0945 -2.4107
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5139 -0.8900
27 1 0.7096 1.1617 3.4844
28 1 1.6705 -2.6100 -0.4118
29 1 0.3521 -1.9546 -1.4134
30 1 3.0896 -2.8729 -2.4059
31 1 1.5421 -3.7181 -2.6521
32 1 -0.2539 0.9564 -7.0633
33 1 1.9018 2.1197 -7.7942
34 1 0.6691 0.2105 -2.5338
35 1 2.2103 1.0764 -2.3196
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000249917605.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:23:40
Heat of formation + Delta-G solvation = -4.462797 kcal
Electronic energy + Delta-G solvation = -18621.969620 eV
Core-core repulsion = 15746.566284 eV
Total energy + Delta-G solvation = -2875.403336 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.14274 -40.11565 -37.53489 -34.61112 -33.46307 -31.12913 -30.45026 -27.81647
-27.39626 -25.87687 -24.51671 -23.05320 -21.12794 -20.43556 -19.20257 -18.28738
-17.41499 -17.18368 -16.52151 -16.29505 -16.01604 -15.66803 -15.60753 -15.08719
-14.73834 -14.57615 -14.18943 -13.75916 -13.36956 -12.95177 -12.77091 -12.69757
-12.57788 -12.43875 -12.38379 -12.07260 -12.00020 -11.46465 -11.04409 -10.73491
-10.56341 -10.49397 -10.34887 -9.86201 -9.04233 -8.10903 -6.22646 -0.32824
0.30686 0.76186 1.45432 1.46831 1.54383 1.84309 2.43251 2.78653
3.02444 3.18614 3.36184 3.86408 3.94975 4.08976 4.21490 4.34274
4.40301 4.48092 4.54020 4.59720 4.62624 4.80670 4.81831 4.94471
5.01844 5.11419 5.22025 5.43212 5.64304 5.72577 6.06058 6.13698
6.35530 6.57793 6.82308 6.88408 7.46512 8.95495
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.034682 B = 0.004680 C = 0.004507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 807.140591 B = 5981.053642 C = 6211.512460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.217 3.783
3 H 0.008 0.992
4 C -0.513 4.513
5 H 0.062 0.938
6 C 0.011 3.989
7 N -0.923 5.923
8 Si 0.963 3.037
9 H -0.271 1.271
10 H -0.287 1.287
11 H -0.270 1.270
12 N -0.531 5.531
13 C 0.025 3.975
14 C 0.069 3.931
15 O -0.383 6.383
16 C 0.179 3.821
17 H 0.096 0.904
18 C 0.020 3.980
19 N -0.487 5.487
20 C 0.013 3.987
21 C -0.241 4.241
22 S 0.176 5.824
23 C 0.039 3.961
24 H 0.064 0.936
25 H 0.033 0.967
26 H 0.014 0.986
27 H 0.261 0.739
28 H 0.085 0.915
29 H 0.023 0.977
30 H 0.070 0.930
31 H 0.121 0.879
32 H 0.197 0.803
33 H 0.217 0.783
34 H 0.023 0.977
35 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.974 -0.820 -17.429 17.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.110 3.890
3 H 0.026 0.974
4 C -0.552 4.552
5 H 0.080 0.920
6 C -0.187 4.187
7 N -0.562 5.562
8 Si 0.788 3.212
9 H -0.196 1.196
10 H -0.213 1.213
11 H -0.195 1.195
12 N -0.255 5.255
13 C -0.104 4.104
14 C -0.008 4.008
15 O -0.302 6.302
16 C 0.118 3.882
17 H 0.114 0.886
18 C -0.258 4.258
19 N -0.203 5.203
20 C -0.138 4.138
21 C -0.380 4.380
22 S 0.430 5.570
23 C -0.092 4.092
24 H 0.083 0.917
25 H 0.052 0.948
26 H 0.033 0.967
27 H 0.070 0.930
28 H 0.103 0.897
29 H 0.042 0.958
30 H 0.088 0.912
31 H 0.139 0.861
32 H 0.214 0.786
33 H 0.234 0.766
34 H 0.041 0.959
35 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 4.943 -0.887 -17.068 17.791
hybrid contribution -1.755 0.185 0.836 1.953
sum 3.188 -0.701 -16.232 16.557
Atomic orbital electron populations
1.22197 1.00603 0.99175 0.99576 1.19079 0.89813 0.93068 0.87042
0.97394 1.21281 1.30813 1.12667 0.90417 0.91951 1.25723 0.95283
0.95763 1.01957 1.70013 1.37830 1.24253 1.24151 0.85540 0.78774
0.78624 0.78250 1.19577 1.21278 1.19526 1.62532 1.58398 1.02826
1.01778 1.22695 0.96579 0.91363 0.99737 1.22892 1.01183 0.94029
0.82683 1.87995 1.78229 1.23735 1.40236 1.20381 0.97594 0.82563
0.87667 0.88626 1.26621 0.93151 1.03969 1.02013 1.66201 1.23204
1.20150 1.10766 1.22281 1.01463 0.96416 0.93597 1.27640 0.95005
1.08944 1.06424 1.83749 1.14124 1.41849 1.17314 1.22555 0.98442
0.97673 0.90490 0.91707 0.94825 0.96734 0.92952 0.89674 0.95831
0.91161 0.86072 0.78591 0.76609 0.95875 0.90589
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.93 8.21 71.98 0.59 -7.34 16
2 C 0.22 11.16 2.31 44.17 0.10 11.26 16
3 H 0.01 0.46 8.04 -2.39 -0.02 0.45 16
4 C -0.51 -27.86 7.94 25.60 0.20 -27.66 16
5 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16
6 C 0.01 0.62 5.30 84.66 0.45 1.07 16
7 N -0.92 -53.08 11.32 21.45 0.24 -52.83 16
8 Si 0.96 43.12 29.54 68.60 2.03 45.15 16
9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16
11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
12 N -0.53 -23.05 4.67 -874.36 -4.08 -27.14 16
13 C 0.02 0.96 4.82 86.32 0.42 1.38 16
14 C 0.07 2.14 7.01 72.02 0.50 2.65 16
15 O -0.38 -13.34 10.44 -148.98 -1.55 -14.89 16
16 C 0.18 5.93 3.31 29.88 0.10 6.03 16
17 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16
18 C 0.02 0.59 6.29 88.52 0.56 1.14 16
19 N -0.49 -15.38 10.52 -191.45 -2.01 -17.39 16
20 C 0.01 0.30 11.35 83.66 0.95 1.24 16
21 C -0.24 -4.19 11.37 66.78 0.76 -3.43 16
22 S 0.18 3.70 23.18 -56.49 -1.31 2.39 16
23 C 0.04 1.51 4.65 86.32 0.40 1.91 16
24 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16
25 H 0.03 1.64 6.38 -2.39 -0.02 1.63 16
26 H 0.01 0.67 6.73 -2.38 -0.02 0.65 16
27 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16
28 H 0.08 3.44 6.80 -2.39 -0.02 3.42 16
29 H 0.02 0.99 6.37 -2.39 -0.02 0.97 16
30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16
32 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16
33 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16
34 H 0.02 1.00 6.72 -2.39 -0.02 0.99 16
35 H 0.08 2.91 8.09 -2.39 -0.02 2.89 16
Total: -1.00 -65.48 294.71 -0.57 -66.05
By element:
Atomic # 1 Polarization: 9.33 SS G_CDS: 1.09 Total: 10.42 kcal
Atomic # 6 Polarization: -16.78 SS G_CDS: 5.03 Total: -11.75 kcal
Atomic # 7 Polarization: -91.51 SS G_CDS: -5.86 Total: -97.36 kcal
Atomic # 8 Polarization: -13.34 SS G_CDS: -1.55 Total: -14.89 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal
Atomic # 16 Polarization: 3.70 SS G_CDS: -1.31 Total: 2.39 kcal
Total: -65.48 -0.57 -66.05 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249917605.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.589 kcal
(2) G-P(sol) polarization free energy of solvation -65.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds