Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34042 * 126.77965 * 2 1 4 4 N 1.20918 * 111.56862 * 180.02562 * 3 2 1 5 5 C 1.30175 * 111.60431 * 359.74671 * 4 3 2 6 6 C 1.35455 * 126.77391 * 180.02562 * 2 1 3 7 7 C 1.50695 * 128.00860 * 359.96264 * 6 2 1 8 8 N 1.46905 * 109.46734 * 279.85294 * 7 6 2 9 9 C 1.46469 * 110.99807 * 74.37732 * 8 7 6 10 10 C 1.53252 * 109.85753 * 162.22937 * 9 8 7 11 11 S 1.81902 * 108.50531 * 62.00185 * 10 9 8 12 12 C 1.81905 * 101.91479 * 308.69324 * 11 10 9 13 13 C 1.46466 * 111.00041 * 308.39078 * 8 7 6 14 14 H 1.08993 * 109.40264 * 77.65243 * 13 8 7 15 15 C 1.50690 * 109.40979 * 317.88591 * 13 8 7 16 16 H 1.08006 * 120.00121 * 354.29514 * 15 13 8 17 17 C 1.37879 * 120.00294 * 174.29244 * 15 13 8 18 18 N 1.31515 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00253 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47244 * 59.99887 * 19 17 15 21 21 H 1.48503 * 109.47096 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47076 * 299.99768 * 19 17 15 23 23 H 1.08999 * 109.47453 * 275.07966 * 1 2 3 24 24 H 1.09007 * 109.46728 * 35.07443 * 1 2 3 25 25 H 1.09000 * 109.47429 * 155.07638 * 1 2 3 26 26 H 1.08003 * 126.80359 * 180.25315 * 5 4 3 27 27 H 1.08996 * 109.47219 * 39.85422 * 7 6 2 28 28 H 1.09001 * 109.47210 * 159.85727 * 7 6 2 29 29 H 1.08995 * 109.40290 * 282.34875 * 9 8 7 30 30 H 1.08997 * 109.40694 * 42.19035 * 9 8 7 31 31 H 1.08999 * 109.62755 * 181.70399 * 10 9 8 32 32 H 1.08997 * 109.63176 * 302.09889 * 10 9 8 33 33 H 1.08998 * 109.63252 * 171.00725 * 12 11 10 34 34 H 1.08996 * 109.62940 * 291.40232 * 12 11 10 35 35 H 0.96991 * 120.00434 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0850 -0.0005 7 6 1.9223 -2.5391 -0.0004 8 7 1.5658 -2.9494 1.3644 9 6 0.2573 -2.4149 1.7483 10 6 -0.2881 -3.1889 2.9532 11 16 0.8505 -2.9560 4.3526 12 6 2.4530 -3.3896 3.6090 13 6 2.6210 -2.5879 2.3137 14 1 2.5585 -1.5228 2.5363 15 6 3.9663 -2.8929 1.7071 16 1 4.0272 -3.3978 0.7543 17 6 5.1197 -2.5275 2.3685 18 7 5.0456 -1.9132 3.5290 19 14 6.7873 -2.9050 1.6162 20 1 6.9001 -2.2298 0.2984 21 1 7.8598 -2.4126 2.5176 22 1 6.9276 -4.3721 1.4344 23 1 -0.3634 0.0910 1.0236 24 1 -0.3633 0.8411 -0.5906 25 1 -0.3634 -0.9319 -0.4331 26 1 4.5528 -1.0840 0.0090 27 1 1.0654 -2.6826 -0.6585 28 1 2.7578 -3.1430 -0.3547 29 1 0.3590 -1.3618 2.0102 30 1 -0.4343 -2.5149 0.9118 31 1 -1.2749 -2.8083 3.2168 32 1 -0.3581 -4.2484 2.7068 33 1 3.2573 -3.1401 4.3010 34 1 2.4775 -4.4568 3.3885 35 1 5.8569 -1.6557 3.9941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259863739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = 72.161613 kcal Electronic energy + Delta-G solvation = -19711.510877 eV Core-core repulsion = 16839.430225 eV Total energy + Delta-G solvation = -2872.080652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.21702 -38.05867 -33.66710 -33.23667 -32.40412 -30.60737 -29.48291 -27.31397 -25.49343 -24.80285 -22.33548 -21.93946 -20.56260 -19.10705 -16.98080 -16.93124 -16.24143 -15.72633 -15.03194 -14.81463 -14.19855 -14.06906 -13.62422 -13.25818 -13.06104 -12.87621 -12.67965 -12.23850 -12.10459 -11.77814 -11.49030 -11.25480 -11.06838 -10.96210 -10.63126 -10.44475 -10.36720 -10.10166 -9.48581 -9.44840 -8.84558 -8.59275 -8.47260 -7.51571 -6.91021 -6.22311 -4.28120 2.08509 2.63925 3.06453 3.16315 3.25216 3.26249 3.49712 3.71444 4.22277 4.73082 5.06547 5.10005 5.12150 5.42494 5.44889 5.50386 5.54152 5.69521 5.74073 5.81222 6.02554 6.09399 6.18048 6.28626 6.39919 6.46528 6.52221 6.69885 6.88174 7.08416 7.43158 7.55341 7.71582 8.00503 8.31220 8.76751 8.97805 9.35460 10.84493 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.011925 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.470369 B = 2347.363019 C = 3741.846821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.059 4.059 3 O 0.080 5.920 4 N -0.386 5.386 5 C 0.045 3.955 6 C -0.198 4.198 7 C 0.149 3.851 8 N -0.540 5.540 9 C 0.050 3.950 10 C -0.066 4.066 11 S -0.340 6.340 12 C -0.034 4.034 13 C 0.225 3.775 14 H 0.021 0.979 15 C -0.513 4.513 16 H 0.069 0.931 17 C 0.067 3.933 18 N -0.880 5.880 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.189 0.811 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -0.253 -6.257 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 O 0.018 5.982 4 N -0.093 5.093 5 C -0.134 4.134 6 C -0.204 4.204 7 C 0.020 3.980 8 N -0.263 5.263 9 C -0.080 4.080 10 C -0.215 4.215 11 S -0.113 6.113 12 C -0.182 4.182 13 C 0.118 3.882 14 H 0.039 0.961 15 C -0.553 4.553 16 H 0.087 0.913 17 C -0.137 4.137 18 N -0.517 5.517 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.206 0.794 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.452 0.678 -4.988 9.838 hybrid contribution 1.158 -0.523 -1.187 1.739 sum -7.294 0.155 -6.175 9.558 Atomic orbital electron populations 1.20362 0.85220 1.03580 1.03453 1.24094 0.95669 0.86614 1.05991 1.84708 1.11649 1.33139 1.68743 1.73787 0.96688 1.17656 1.21158 1.25024 1.00371 0.89064 0.98922 1.21907 0.92439 0.98746 1.07276 1.20384 1.00257 0.86802 0.90527 1.61617 1.02411 1.59531 1.02766 1.22395 0.92342 0.97023 0.96197 1.23310 0.99057 1.03417 0.95744 1.86613 1.10020 1.91552 1.23125 1.23957 0.91020 1.01867 1.01398 1.19277 0.88318 0.93967 0.86689 0.96103 1.21101 0.89106 1.38905 1.06163 0.91290 1.24947 0.99124 0.94689 0.94953 1.69862 1.28999 1.38618 1.14190 0.86715 0.83551 0.79007 0.79189 1.20016 1.21103 1.19886 0.89915 0.90715 0.89607 0.79367 0.91849 0.88667 0.93809 0.91385 0.89139 0.90102 0.86015 0.91680 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 8.56 36.00 0.31 -0.50 16 2 C -0.06 -1.00 6.99 -35.30 -0.25 -1.24 16 3 O 0.08 1.53 11.20 17.17 0.19 1.72 16 4 N -0.39 -8.18 12.07 30.35 0.37 -7.82 16 5 C 0.05 0.94 10.62 -17.06 -0.18 0.76 16 6 C -0.20 -3.66 4.07 -104.42 -0.42 -4.08 16 7 C 0.15 2.55 5.16 -4.98 -0.03 2.52 16 8 N -0.54 -10.22 4.50 -229.87 -1.03 -11.25 16 9 C 0.05 0.81 3.80 -3.93 -0.01 0.80 16 10 C -0.07 -1.08 6.69 37.29 0.25 -0.83 16 11 S -0.34 -6.93 22.40 -107.50 -2.41 -9.34 16 12 C -0.03 -0.79 5.81 37.29 0.22 -0.57 16 13 C 0.23 5.14 1.09 -68.97 -0.08 5.06 16 14 H 0.02 0.57 7.41 -51.93 -0.39 0.19 16 15 C -0.51 -12.26 5.19 -34.44 -0.18 -12.44 16 16 H 0.07 1.61 5.79 -52.48 -0.30 1.30 16 17 C 0.07 1.68 5.18 -17.82 -0.09 1.59 16 18 N -0.88 -23.69 11.72 55.43 0.65 -23.04 16 19 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H 0.08 0.97 6.84 -51.93 -0.36 0.61 16 24 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.09 0.87 6.50 -51.93 -0.34 0.53 16 26 H 0.19 4.07 7.08 -52.48 -0.37 3.70 16 27 H 0.06 0.90 7.29 -51.93 -0.38 0.52 16 28 H 0.10 1.71 6.14 -51.93 -0.32 1.39 16 29 H 0.04 0.77 5.46 -51.93 -0.28 0.49 16 30 H 0.07 0.89 6.64 -51.93 -0.34 0.55 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.12 3.14 6.48 -51.93 -0.34 2.81 16 34 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 282.38 15.07 4.26 4.26 Total: -1.00 -27.51 282.38 -7.71 -35.22 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.24 Total: 4.46 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.47 Total: -8.93 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.02 Total: -42.11 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -2.41 Total: -9.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.51 -7.71 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.380 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds