Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34042 * 126.77965 * 2 1 4 4 N 1.20918 * 111.56862 * 180.02562 * 3 2 1 5 5 C 1.30175 * 111.60431 * 359.74671 * 4 3 2 6 6 C 1.35455 * 126.77391 * 180.02562 * 2 1 3 7 7 C 1.50695 * 128.00860 * 359.96264 * 6 2 1 8 8 N 1.46905 * 109.46734 * 279.85294 * 7 6 2 9 9 C 1.46469 * 110.99807 * 74.37732 * 8 7 6 10 10 C 1.53252 * 109.85753 * 162.22937 * 9 8 7 11 11 S 1.81902 * 108.50531 * 62.00185 * 10 9 8 12 12 C 1.81905 * 101.91479 * 308.69324 * 11 10 9 13 13 C 1.46466 * 111.00041 * 308.39078 * 8 7 6 14 14 H 1.08993 * 109.40264 * 77.65243 * 13 8 7 15 15 C 1.50690 * 109.40979 * 317.88591 * 13 8 7 16 16 H 1.08006 * 120.00121 * 354.29514 * 15 13 8 17 17 C 1.37879 * 120.00294 * 174.29244 * 15 13 8 18 18 N 1.31515 * 119.99866 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00253 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47244 * 59.99887 * 19 17 15 21 21 H 1.48503 * 109.47096 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47076 * 299.99768 * 19 17 15 23 23 H 1.08999 * 109.47453 * 275.07966 * 1 2 3 24 24 H 1.09007 * 109.46728 * 35.07443 * 1 2 3 25 25 H 1.09000 * 109.47429 * 155.07638 * 1 2 3 26 26 H 1.08003 * 126.80359 * 180.25315 * 5 4 3 27 27 H 1.08996 * 109.47219 * 39.85422 * 7 6 2 28 28 H 1.09001 * 109.47210 * 159.85727 * 7 6 2 29 29 H 1.08995 * 109.40290 * 282.34875 * 9 8 7 30 30 H 1.08997 * 109.40694 * 42.19035 * 9 8 7 31 31 H 1.08999 * 109.62755 * 181.70399 * 10 9 8 32 32 H 1.08997 * 109.63176 * 302.09889 * 10 9 8 33 33 H 1.08998 * 109.63252 * 171.00725 * 12 11 10 34 34 H 1.08996 * 109.62940 * 291.40232 * 12 11 10 35 35 H 0.96991 * 120.00434 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0850 -0.0005 7 6 1.9223 -2.5391 -0.0004 8 7 1.5658 -2.9494 1.3644 9 6 0.2573 -2.4149 1.7483 10 6 -0.2881 -3.1889 2.9532 11 16 0.8505 -2.9560 4.3526 12 6 2.4530 -3.3896 3.6090 13 6 2.6210 -2.5879 2.3137 14 1 2.5585 -1.5228 2.5363 15 6 3.9663 -2.8929 1.7071 16 1 4.0272 -3.3978 0.7543 17 6 5.1197 -2.5275 2.3685 18 7 5.0456 -1.9132 3.5290 19 14 6.7873 -2.9050 1.6162 20 1 6.9001 -2.2298 0.2984 21 1 7.8598 -2.4126 2.5176 22 1 6.9276 -4.3721 1.4344 23 1 -0.3634 0.0910 1.0236 24 1 -0.3633 0.8411 -0.5906 25 1 -0.3634 -0.9319 -0.4331 26 1 4.5528 -1.0840 0.0090 27 1 1.0654 -2.6826 -0.6585 28 1 2.7578 -3.1430 -0.3547 29 1 0.3590 -1.3618 2.0102 30 1 -0.4343 -2.5149 0.9118 31 1 -1.2749 -2.8083 3.2168 32 1 -0.3581 -4.2484 2.7068 33 1 3.2573 -3.1401 4.3010 34 1 2.4775 -4.4568 3.3885 35 1 5.8569 -1.6557 3.9941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259863739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = 54.509633 kcal Electronic energy + Delta-G solvation = -19712.276324 eV Core-core repulsion = 16839.430225 eV Total energy + Delta-G solvation = -2872.846099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.73007 -39.57213 -35.30760 -34.80258 -33.83322 -32.10603 -31.10706 -28.55437 -27.33741 -26.29201 -23.79886 -23.51216 -22.08003 -20.66177 -18.63189 -18.49299 -17.80536 -17.35103 -16.74301 -16.22260 -15.87164 -15.54999 -15.02256 -14.71327 -14.44824 -14.37336 -13.98988 -13.74647 -13.38097 -13.19562 -12.90751 -12.83100 -12.72481 -12.61937 -12.27752 -12.18789 -12.05079 -11.67546 -11.05613 -10.98976 -10.65218 -10.32559 -9.93922 -9.06333 -8.53948 -8.16382 -6.25697 0.70646 1.12267 1.37226 1.39943 1.45180 1.52937 1.86566 2.36341 2.43964 3.16089 3.29353 3.61861 3.91133 4.07728 4.13285 4.32218 4.42287 4.48767 4.62079 4.67158 4.72705 4.75292 4.86719 4.88336 4.94319 4.97551 5.12236 5.18331 5.28339 5.48454 5.59399 5.67780 6.00687 6.25301 6.67636 6.87844 7.41645 7.51330 8.89489 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.011925 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.470369 B = 2347.363019 C = 3741.846821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.043 4.043 3 O 0.076 5.924 4 N -0.415 5.415 5 C 0.022 3.978 6 C -0.213 4.213 7 C 0.150 3.850 8 N -0.542 5.542 9 C 0.048 3.952 10 C -0.053 4.053 11 S -0.368 6.368 12 C -0.030 4.030 13 C 0.243 3.757 14 H -0.026 1.026 15 C -0.503 4.503 16 H 0.075 0.925 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.936 3.064 20 H -0.268 1.268 21 H -0.296 1.296 22 H -0.266 1.266 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.171 0.829 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.167 -0.931 -8.093 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 O 0.014 5.986 4 N -0.123 5.123 5 C -0.156 4.156 6 C -0.219 4.219 7 C 0.022 3.978 8 N -0.265 5.265 9 C -0.081 4.081 10 C -0.201 4.201 11 S -0.142 6.142 12 C -0.179 4.179 13 C 0.134 3.866 14 H -0.008 1.008 15 C -0.543 4.543 16 H 0.093 0.907 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.222 1.222 22 H -0.190 1.190 23 H 0.108 0.892 24 H 0.119 0.881 25 H 0.132 0.868 26 H 0.189 0.811 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.521 -0.017 -6.852 13.405 hybrid contribution 1.966 -0.285 -0.646 2.089 sum -9.555 -0.302 -7.497 12.149 Atomic orbital electron populations 1.20676 0.81044 1.06306 1.04618 1.24995 0.97689 0.85154 1.02977 1.84656 1.11363 1.34138 1.68476 1.73760 0.97990 1.17996 1.22557 1.25012 1.01158 0.89447 1.00016 1.22042 0.91491 0.99941 1.08420 1.20491 1.01691 0.85546 0.90067 1.61559 1.02536 1.59698 1.02708 1.22553 0.91547 0.96109 0.97909 1.23515 0.98839 1.04490 0.93287 1.86636 1.09622 1.91671 1.26235 1.23593 0.91984 1.01286 1.01010 1.18832 0.89325 0.90957 0.87442 1.00842 1.21380 0.89855 1.37261 1.05847 0.90709 1.25554 1.01984 0.94895 0.95158 1.70017 1.29034 1.40735 1.15742 0.85937 0.80211 0.79086 0.78495 1.19259 1.22208 1.19035 0.89247 0.88067 0.86827 0.81130 0.87345 0.90024 0.94984 0.86436 0.85544 0.88980 0.89744 0.92168 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 8.56 71.24 0.61 -0.68 16 2 C -0.04 -1.36 6.99 25.04 0.18 -1.18 16 3 O 0.08 2.85 11.20 71.62 0.80 3.65 16 4 N -0.42 -17.90 12.07 -59.27 -0.72 -18.62 16 5 C 0.02 0.93 10.62 85.71 0.91 1.84 16 6 C -0.21 -7.56 4.07 -19.73 -0.08 -7.64 16 7 C 0.15 4.71 5.16 85.55 0.44 5.15 16 8 N -0.54 -19.17 4.50 -881.19 -3.96 -23.13 16 9 C 0.05 1.34 3.80 86.47 0.33 1.67 16 10 C -0.05 -1.50 6.69 72.07 0.48 -1.02 16 11 S -0.37 -14.71 22.40 -56.49 -1.27 -15.97 16 12 C -0.03 -1.41 5.81 72.07 0.42 -0.99 16 13 C 0.24 11.15 1.09 44.33 0.05 11.20 16 14 H -0.03 -1.44 7.41 -2.39 -0.02 -1.45 16 15 C -0.50 -24.49 5.19 25.60 0.13 -24.35 16 16 H 0.07 3.49 5.79 -2.91 -0.02 3.48 16 17 C 0.02 1.26 5.18 84.66 0.44 1.70 16 18 N -0.92 -51.83 11.72 21.45 0.25 -51.58 16 19 Si 0.94 41.65 29.54 68.60 2.03 43.67 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H 0.09 1.66 6.84 -2.39 -0.02 1.64 16 24 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.11 1.52 6.50 -2.39 -0.02 1.50 16 26 H 0.17 7.70 7.08 -2.91 -0.02 7.68 16 27 H 0.11 2.45 7.29 -2.39 -0.02 2.43 16 28 H 0.08 2.79 6.14 -2.39 -0.01 2.77 16 29 H 0.03 1.01 5.46 -2.39 -0.01 1.00 16 30 H 0.12 2.22 6.64 -2.39 -0.02 2.20 16 31 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 33 H 0.08 4.59 6.48 -2.39 -0.02 4.57 16 34 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.98 282.38 2.15 -61.83 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.11 Total: 14.46 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.90 Total: -14.32 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -4.43 Total: -93.33 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.80 Total: 3.65 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -14.71 SS G_CDS: -1.27 Total: -15.97 kcal Total: -63.98 2.15 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259863739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.343 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds