Wall clock time and date at job start Mon Mar 30 2020 04:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48495 * 109.47176 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46990 * 239.99660 * 3 2 1 6 6 H 1.48501 * 109.47448 * 119.99983 * 3 2 1 7 7 C 1.37879 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99885 * 17.61881 * 7 2 1 9 9 C 1.50704 * 120.00187 * 197.62355 * 7 2 1 10 10 H 1.08999 * 109.40462 * 305.55756 * 9 7 2 11 11 C 1.53246 * 109.40672 * 65.39817 * 9 7 2 12 12 S 1.81899 * 108.50507 * 182.12418 * 11 9 7 13 13 C 1.81897 * 101.91368 * 308.69057 * 12 11 9 14 14 C 1.53255 * 108.50088 * 51.30629 * 13 12 11 15 15 N 1.46469 * 109.40551 * 185.71433 * 9 7 2 16 16 C 1.46896 * 110.99890 * 42.11670 * 15 9 7 17 17 C 1.53007 * 109.47105 * 175.91144 * 16 15 9 18 18 C 1.50699 * 109.47168 * 174.13120 * 17 16 15 19 19 N 1.30257 * 125.61813 * 89.99685 * 18 17 16 20 20 C 1.34478 * 108.69937 * 179.97438 * 19 18 17 21 21 C 1.34335 * 107.67011 * 0.02562 * 20 19 18 22 22 O 1.33973 * 125.61973 * 269.69254 * 18 17 16 23 23 H 0.96999 * 119.99960 * 174.73548 * 1 2 3 24 24 H 1.09002 * 109.63039 * 301.82865 * 11 9 7 25 25 H 1.09000 * 109.63195 * 62.21964 * 11 9 7 26 26 H 1.08993 * 109.62982 * 171.00823 * 13 12 11 27 27 H 1.08993 * 109.63304 * 291.60172 * 13 12 11 28 28 H 1.09000 * 109.40706 * 58.11896 * 14 13 12 29 29 H 1.09009 * 109.40255 * 177.95330 * 14 13 12 30 30 H 1.09008 * 109.47146 * 295.90820 * 16 15 9 31 31 H 1.08995 * 109.47479 * 55.91104 * 16 15 9 32 32 H 1.08999 * 109.46743 * 294.13332 * 17 16 15 33 33 H 1.09001 * 109.46888 * 54.13045 * 17 16 15 34 34 H 1.07998 * 126.16320 * 180.02562 * 20 19 18 35 35 H 1.08000 * 126.44374 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.5025 -2.1075 -0.2822 9 6 3.4585 -1.2246 0.3957 10 1 4.0151 -0.5148 -0.2163 11 6 3.5930 -0.8385 1.8726 12 16 5.3594 -0.8216 2.3064 13 6 5.9079 -2.4506 1.7112 14 6 5.4546 -2.6146 0.2564 15 7 3.9920 -2.5722 0.1847 16 6 3.5118 -3.1358 -1.0840 17 6 4.1684 -4.4979 -1.3181 18 6 3.5700 -5.1402 -2.5430 19 7 4.0082 -5.0035 -3.7620 20 6 3.2244 -5.7223 -4.5850 21 6 2.2793 -6.3132 -3.8351 22 8 2.5032 -5.9505 -2.5568 23 1 -0.4850 -0.8365 -0.0771 24 1 3.1672 0.1520 2.0325 25 1 3.0681 -1.5669 2.4908 26 1 6.9947 -2.5133 1.7654 27 1 5.4619 -3.2337 2.3242 28 1 5.8714 -1.8075 -0.3461 29 1 5.8075 -3.5721 -0.1271 30 1 2.4293 -3.2569 -1.0412 31 1 3.7700 -2.4627 -1.9015 32 1 5.2401 -4.3640 -1.4647 33 1 3.9972 -5.1373 -0.4521 34 1 3.3348 -5.8089 -5.6558 35 1 1.4915 -6.9614 -4.1895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259934942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:34 Heat of formation + Delta-G solvation = 36.772880 kcal Electronic energy + Delta-G solvation = -18587.720506 eV Core-core repulsion = 15714.105284 eV Total energy + Delta-G solvation = -2873.615222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.22991 -38.12365 -34.69581 -33.61789 -32.67467 -30.80430 -29.77606 -27.38747 -25.05010 -23.26121 -22.52958 -22.27421 -20.61342 -19.47239 -17.72779 -17.41117 -16.51018 -16.11041 -15.30737 -15.23362 -14.79373 -14.20594 -13.88434 -13.60428 -13.35114 -13.09067 -12.69660 -12.50621 -12.12360 -11.99054 -11.54081 -11.35275 -11.28037 -11.14190 -10.87646 -10.51835 -10.40489 -10.24553 -9.77014 -9.48144 -8.82488 -8.75600 -8.38342 -7.62395 -7.14889 -6.62479 -4.25482 1.51850 2.42025 2.73870 2.82798 3.18609 3.31538 3.37463 3.52221 4.06576 4.34625 4.55718 4.93801 5.03267 5.09681 5.25072 5.29123 5.35377 5.54361 5.59169 5.65984 5.80196 5.89678 5.95828 6.10561 6.15012 6.20522 6.30597 6.41162 6.45453 6.66883 7.03167 7.36006 7.70585 7.80401 8.06906 8.25694 8.76967 9.42659 10.77113 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.006692 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.158767 B = 4182.894656 C = 5369.991377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 1.036 2.964 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.072 0.928 9 C 0.199 3.801 10 H 0.010 0.990 11 C -0.054 4.054 12 S -0.335 6.335 13 C -0.062 4.062 14 C 0.041 3.959 15 N -0.538 5.538 16 C 0.081 3.919 17 C -0.033 4.033 18 C 0.210 3.790 19 N -0.489 5.489 20 C -0.045 4.045 21 C -0.084 4.084 22 O -0.200 6.200 23 H 0.270 0.730 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.181 0.819 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -10.197 -3.583 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.171 4.171 3 Si 0.865 3.135 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.641 4.641 8 H 0.090 0.910 9 C 0.090 3.910 10 H 0.027 0.973 11 C -0.202 4.202 12 S -0.108 6.108 13 C -0.211 4.211 14 C -0.089 4.089 15 N -0.263 5.263 16 C -0.047 4.047 17 C -0.071 4.071 18 C 0.002 3.998 19 N -0.218 5.218 20 C -0.184 4.184 21 C -0.155 4.155 22 O -0.086 6.086 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.198 0.802 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.695 -7.660 -2.714 11.902 hybrid contribution -0.929 -2.594 -1.287 3.041 sum 7.766 -10.255 -4.001 13.471 Atomic orbital electron populations 1.70860 1.06796 1.31158 1.43786 1.25718 0.96145 1.02281 0.92935 0.84130 0.75532 0.76138 0.77743 1.20729 1.20680 1.19784 1.22053 0.93896 0.96687 1.51449 0.91031 1.19639 0.96814 0.84292 0.90240 0.97292 1.24487 0.88400 1.05509 1.01824 1.86576 1.17183 1.25313 1.81760 1.23317 1.02538 0.96404 0.98796 1.22396 0.90183 1.01307 0.94973 1.61212 1.06405 1.25500 1.33175 1.21858 1.01355 0.90856 0.90639 1.20471 0.99703 0.97308 0.89660 1.26397 0.85244 0.92033 0.96079 1.70476 1.29008 1.22074 1.00287 1.23340 0.94621 0.99154 1.01268 1.24991 1.03977 1.05643 0.80903 1.84487 1.42414 1.51343 1.30381 0.91929 0.87913 0.89932 0.88647 0.89678 0.93997 0.90301 0.88786 0.94246 0.87985 0.88300 0.80164 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.70 55.43 0.76 -25.37 16 2 C 0.04 1.01 5.32 -17.82 -0.09 0.91 16 3 Si 1.04 24.47 26.34 -169.99 -4.48 19.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.03 5.63 56.52 0.32 -5.71 16 7 C -0.60 -15.72 8.09 -34.44 -0.28 -16.00 16 8 H 0.07 2.00 5.97 -52.49 -0.31 1.68 16 9 C 0.20 4.52 1.47 -68.97 -0.10 4.42 16 10 H 0.01 0.23 6.56 -51.93 -0.34 -0.11 16 11 C -0.05 -1.18 5.64 37.28 0.21 -0.97 16 12 S -0.34 -6.38 22.40 -107.50 -2.41 -8.78 16 13 C -0.06 -0.95 6.69 37.29 0.25 -0.70 16 14 C 0.04 0.66 5.19 -3.91 -0.02 0.64 16 15 N -0.54 -10.39 4.43 -228.39 -1.01 -11.40 16 16 C 0.08 1.51 4.41 -3.82 -0.02 1.49 16 17 C -0.03 -0.48 5.11 -27.88 -0.14 -0.62 16 18 C 0.21 3.29 7.60 -12.95 -0.10 3.19 16 19 N -0.49 -7.84 11.29 -11.10 -0.13 -7.96 16 20 C -0.05 -0.58 11.89 -17.77 -0.21 -0.79 16 21 C -0.08 -1.00 12.18 29.36 0.36 -0.64 16 22 O -0.20 -3.02 10.78 5.35 0.06 -2.96 16 23 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 24 H 0.10 2.36 4.80 -51.93 -0.25 2.11 16 25 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.08 1.03 5.30 -51.92 -0.28 0.76 16 30 H 0.09 1.99 5.91 -51.92 -0.31 1.68 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.32 6.31 -51.93 -0.33 1.00 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.18 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.21 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 290.65 15.07 4.38 4.38 Total: -1.00 -30.24 290.65 -7.39 -37.63 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.42 Total: 3.55 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.15 Total: -9.08 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.38 Total: -44.73 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.48 Total: 19.99 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -2.41 Total: -8.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.24 -7.39 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259934942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.405 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds