Wall clock time and date at job start Mon Mar 30 2020 04:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46973 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47060 * 119.99863 * 3 2 1 6 6 H 1.48496 * 109.47096 * 240.00060 * 3 2 1 7 7 C 1.37873 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00050 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.94949 * 56.03254 * 9 7 2 11 11 C 1.53025 * 109.96966 * 294.81115 * 9 7 2 12 12 C 1.45856 * 115.26509 * 148.15083 * 11 9 7 13 13 S 1.83747 * 109.14545 * 64.21496 * 12 11 9 14 14 C 1.80174 * 102.69416 * 292.59185 * 13 12 11 15 15 C 1.53612 * 113.03907 * 84.92826 * 14 13 12 16 16 N 1.45536 * 109.96862 * 177.35317 * 9 7 2 17 17 C 1.46905 * 110.99893 * 346.70181 * 16 9 7 18 18 C 1.50705 * 109.46784 * 178.08420 * 17 16 9 19 19 N 1.30253 * 125.61755 * 90.00685 * 18 17 16 20 20 C 1.34475 * 108.69931 * 179.97438 * 19 18 17 21 21 C 1.34331 * 107.67071 * 359.97438 * 20 19 18 22 22 O 1.33963 * 125.61802 * 269.69149 * 18 17 16 23 23 H 0.97005 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09002 * 108.32083 * 269.65696 * 11 9 7 25 25 H 1.09000 * 108.31519 * 26.65044 * 11 9 7 26 26 H 1.09000 * 109.52475 * 184.11408 * 12 11 9 27 27 H 1.08998 * 109.52731 * 304.24550 * 12 11 9 28 28 H 1.08997 * 108.77254 * 205.84938 * 14 13 12 29 29 H 1.09008 * 108.76644 * 324.01114 * 14 13 12 30 30 H 1.08993 * 108.15038 * 77.31923 * 15 14 13 31 31 H 1.08998 * 108.15128 * 194.08494 * 15 14 13 32 32 H 1.08992 * 109.47067 * 298.08384 * 17 16 9 33 33 H 1.09000 * 109.46926 * 58.08588 * 17 16 9 34 34 H 1.08003 * 126.16424 * 180.02562 * 20 19 18 35 35 H 1.07999 * 126.44240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5691 -2.5348 -0.8500 11 6 0.4676 -2.6503 1.3052 12 6 -0.7859 -3.3880 1.1972 13 16 -0.4240 -5.1237 0.7146 14 6 0.2064 -4.9447 -0.9637 15 6 1.7090 -4.6290 -1.0111 16 7 2.1860 -3.6127 -0.0643 17 6 3.5329 -3.1493 -0.4238 18 6 4.4810 -4.3207 -0.4339 19 7 4.7423 -5.0762 -1.4623 20 6 5.6319 -6.0146 -1.0930 21 6 5.9175 -5.8174 0.2047 22 8 5.1983 -4.7530 0.6116 23 1 -0.4851 0.8401 -0.0004 24 1 1.1037 -3.1593 2.0295 25 1 0.2472 -1.6544 1.6897 26 1 -1.2993 -3.3768 2.1587 27 1 -1.4184 -2.9230 0.4411 28 1 0.0256 -5.8721 -1.5071 29 1 -0.3369 -4.1395 -1.4584 30 1 2.2561 -5.5526 -0.8221 31 1 1.9536 -4.2920 -2.0184 32 1 3.5082 -2.6933 -1.4134 33 1 3.8712 -2.4144 0.3067 34 1 6.0432 -6.7871 -1.7259 35 1 6.5986 -6.3999 0.8074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:42 Heat of formation + Delta-G solvation = 48.373729 kcal Electronic energy + Delta-G solvation = -19088.947627 eV Core-core repulsion = 16215.835455 eV Total energy + Delta-G solvation = -2873.112172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.94558 -38.01862 -34.40423 -33.50140 -32.18725 -31.13952 -29.58541 -26.80118 -25.62623 -23.09471 -22.24623 -21.91043 -20.62626 -19.18683 -17.46511 -16.49578 -16.18635 -15.69859 -15.35757 -14.78086 -14.43672 -14.27894 -14.05079 -13.49997 -13.12096 -12.83231 -12.55838 -12.30016 -11.80041 -11.53664 -11.41439 -11.07367 -10.99807 -10.93361 -10.66127 -10.26463 -10.06479 -9.95893 -9.83265 -9.21341 -8.91173 -8.54436 -8.50695 -7.39615 -6.95054 -6.21849 -4.30469 1.78899 2.49071 2.98247 3.15263 3.21461 3.24910 3.26807 3.29162 4.26530 4.43223 4.85961 5.09912 5.20757 5.27859 5.42830 5.51696 5.81619 5.92497 5.97164 6.08414 6.13765 6.20874 6.30834 6.31799 6.41111 6.62458 6.63380 6.93367 7.13006 7.19450 7.49307 7.64501 7.83409 8.07769 8.10762 8.34225 8.76483 9.38189 10.84855 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.008649 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.034914 B = 3236.666920 C = 4702.155969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.216 3.784 10 H 0.023 0.977 11 C -0.108 4.108 12 C -0.039 4.039 13 S -0.298 6.298 14 C -0.073 4.073 15 C 0.064 3.936 16 N -0.517 5.517 17 C 0.155 3.845 18 C 0.219 3.781 19 N -0.496 5.496 20 C -0.048 4.048 21 C -0.093 4.093 22 O -0.195 6.195 23 H 0.264 0.736 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.177 0.823 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -8.010 -0.202 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.110 3.890 10 H 0.040 0.960 11 C -0.148 4.148 12 C -0.186 4.186 13 S -0.073 6.073 14 C -0.222 4.222 15 C -0.066 4.066 16 N -0.243 5.243 17 C 0.027 3.973 18 C 0.012 3.988 19 N -0.226 5.226 20 C -0.187 4.187 21 C -0.164 4.164 22 O -0.080 6.080 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.194 0.806 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.593 -8.914 0.307 10.033 hybrid contribution 0.959 1.980 -0.896 2.375 sum 5.553 -6.935 -0.589 8.903 Atomic orbital electron populations 1.69935 1.05967 1.27168 1.48738 1.24946 0.94841 0.99236 0.94317 0.86642 0.79698 0.82850 0.78843 1.21178 1.19972 1.20120 1.21631 0.93629 0.90168 1.53011 0.90735 1.19127 0.89919 0.86436 0.93528 0.95975 1.20527 0.93269 1.00146 1.00813 1.22436 1.02161 0.90768 1.03267 1.86290 1.83127 1.17644 1.20208 1.23220 0.98378 1.04571 0.96025 1.22106 0.93381 0.96671 0.94487 1.62351 1.00973 1.14174 1.46777 1.20868 0.86081 0.87175 1.03222 1.27126 0.94435 0.98020 0.79251 1.70521 1.15904 1.06236 1.29971 1.23276 0.99746 1.00961 0.94675 1.24905 1.01807 0.92329 0.97372 1.84506 1.45329 1.37877 1.40334 0.92598 0.92744 0.89740 0.89688 0.90396 0.88703 0.90092 0.92277 0.94728 0.90274 0.86275 0.80629 0.77548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.02 12.06 55.43 0.67 -22.35 16 2 C 0.07 1.78 5.07 -17.82 -0.09 1.69 16 3 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.55 -13.38 7.53 -34.44 -0.26 -13.64 16 8 H 0.07 1.75 4.69 -52.49 -0.25 1.50 16 9 C 0.22 4.94 1.84 -69.59 -0.13 4.81 16 10 H 0.02 0.56 6.07 -51.93 -0.32 0.25 16 11 C -0.11 -2.38 4.38 -30.10 -0.13 -2.51 16 12 C -0.04 -0.77 6.15 33.78 0.21 -0.56 16 13 S -0.30 -5.63 21.84 -107.50 -2.35 -7.98 16 14 C -0.07 -1.31 5.60 37.48 0.21 -1.10 16 15 C 0.06 1.22 4.58 -3.53 -0.02 1.21 16 16 N -0.52 -10.67 4.14 -230.18 -0.95 -11.62 16 17 C 0.15 3.01 4.19 -4.97 -0.02 2.99 16 18 C 0.22 4.00 6.71 -12.95 -0.09 3.92 16 19 N -0.50 -8.78 10.81 -11.10 -0.12 -8.90 16 20 C -0.05 -0.68 11.89 -17.77 -0.21 -0.89 16 21 C -0.09 -1.23 12.18 29.35 0.36 -0.88 16 22 O -0.20 -3.35 10.78 5.37 0.06 -3.29 16 23 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 24 H 0.05 1.23 7.88 -51.93 -0.41 0.82 16 25 H 0.08 2.07 6.39 -51.93 -0.33 1.74 16 26 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.09 1.48 8.14 -51.74 -0.42 1.06 16 29 H 0.08 1.50 7.03 -51.74 -0.36 1.14 16 30 H 0.06 1.15 7.25 -51.93 -0.38 0.77 16 31 H 0.03 0.67 7.89 -51.93 -0.41 0.26 16 32 H 0.08 1.58 7.81 -51.93 -0.41 1.18 16 33 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 34 H 0.18 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.21 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -27.23 290.41 -7.92 -35.15 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.42 Total: 4.88 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.17 Total: -4.96 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.40 Total: -42.87 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.06 Total: -3.29 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.35 Total: -7.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.23 -7.92 -35.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.524 kcal (2) G-P(sol) polarization free energy of solvation -27.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds