Wall clock time and date at job start Mon Mar 30 2020 04:49:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86808 * 119.99831 * 2 1
4 4 H 1.48496 * 109.46973 * 359.97438 * 3 2 1
5 5 H 1.48498 * 109.47060 * 119.99863 * 3 2 1
6 6 H 1.48496 * 109.47096 * 240.00060 * 3 2 1
7 7 C 1.37873 * 120.00263 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1
9 9 C 1.50695 * 120.00050 * 359.97438 * 7 2 1
10 10 H 1.08997 * 109.94949 * 56.03254 * 9 7 2
11 11 C 1.53025 * 109.96966 * 294.81115 * 9 7 2
12 12 C 1.45856 * 115.26509 * 148.15083 * 11 9 7
13 13 S 1.83747 * 109.14545 * 64.21496 * 12 11 9
14 14 C 1.80174 * 102.69416 * 292.59185 * 13 12 11
15 15 C 1.53612 * 113.03907 * 84.92826 * 14 13 12
16 16 N 1.45536 * 109.96862 * 177.35317 * 9 7 2
17 17 C 1.46905 * 110.99893 * 346.70181 * 16 9 7
18 18 C 1.50705 * 109.46784 * 178.08420 * 17 16 9
19 19 N 1.30253 * 125.61755 * 90.00685 * 18 17 16
20 20 C 1.34475 * 108.69931 * 179.97438 * 19 18 17
21 21 C 1.34331 * 107.67071 * 359.97438 * 20 19 18
22 22 O 1.33963 * 125.61802 * 269.69149 * 18 17 16
23 23 H 0.97005 * 120.00284 * 0.02562 * 1 2 3
24 24 H 1.09002 * 108.32083 * 269.65696 * 11 9 7
25 25 H 1.09000 * 108.31519 * 26.65044 * 11 9 7
26 26 H 1.09000 * 109.52475 * 184.11408 * 12 11 9
27 27 H 1.08998 * 109.52731 * 304.24550 * 12 11 9
28 28 H 1.08997 * 108.77254 * 205.84938 * 14 13 12
29 29 H 1.09008 * 108.76644 * 324.01114 * 14 13 12
30 30 H 1.08993 * 108.15038 * 77.31923 * 15 14 13
31 31 H 1.08998 * 108.15128 * 194.08494 * 15 14 13
32 32 H 1.08992 * 109.47067 * 298.08384 * 17 16 9
33 33 H 1.09000 * 109.46926 * 58.08588 * 17 16 9
34 34 H 1.08003 * 126.16424 * 180.02562 * 20 19 18
35 35 H 1.07999 * 126.44240 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 -0.0006
5 1 3.1028 1.6965 1.2125
6 1 3.1028 1.6965 -1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 1 0.5691 -2.5348 -0.8500
11 6 0.4676 -2.6503 1.3052
12 6 -0.7859 -3.3880 1.1972
13 16 -0.4240 -5.1237 0.7146
14 6 0.2064 -4.9447 -0.9637
15 6 1.7090 -4.6290 -1.0111
16 7 2.1860 -3.6127 -0.0643
17 6 3.5329 -3.1493 -0.4238
18 6 4.4810 -4.3207 -0.4339
19 7 4.7423 -5.0762 -1.4623
20 6 5.6319 -6.0146 -1.0930
21 6 5.9175 -5.8174 0.2047
22 8 5.1983 -4.7530 0.6116
23 1 -0.4851 0.8401 -0.0004
24 1 1.1037 -3.1593 2.0295
25 1 0.2472 -1.6544 1.6897
26 1 -1.2993 -3.3768 2.1587
27 1 -1.4184 -2.9230 0.4411
28 1 0.0256 -5.8721 -1.5071
29 1 -0.3369 -4.1395 -1.4584
30 1 2.2561 -5.5526 -0.8221
31 1 1.9536 -4.2920 -2.0184
32 1 3.5082 -2.6933 -1.4134
33 1 3.8712 -2.4144 0.3067
34 1 6.0432 -6.7871 -1.7259
35 1 6.5986 -6.3999 0.8074
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259936972.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:42
Heat of formation + Delta-G solvation = 48.373729 kcal
Electronic energy + Delta-G solvation = -19088.947627 eV
Core-core repulsion = 16215.835455 eV
Total energy + Delta-G solvation = -2873.112172 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.94558 -38.01862 -34.40423 -33.50140 -32.18725 -31.13952 -29.58541 -26.80118
-25.62623 -23.09471 -22.24623 -21.91043 -20.62626 -19.18683 -17.46511 -16.49578
-16.18635 -15.69859 -15.35757 -14.78086 -14.43672 -14.27894 -14.05079 -13.49997
-13.12096 -12.83231 -12.55838 -12.30016 -11.80041 -11.53664 -11.41439 -11.07367
-10.99807 -10.93361 -10.66127 -10.26463 -10.06479 -9.95893 -9.83265 -9.21341
-8.91173 -8.54436 -8.50695 -7.39615 -6.95054 -6.21849 -4.30469 1.78899
2.49071 2.98247 3.15263 3.21461 3.24910 3.26807 3.29162 4.26530
4.43223 4.85961 5.09912 5.20757 5.27859 5.42830 5.51696 5.81619
5.92497 5.97164 6.08414 6.13765 6.20874 6.30834 6.31799 6.41111
6.62458 6.63380 6.93367 7.13006 7.19450 7.49307 7.64501 7.83409
8.07769 8.10762 8.34225 8.76483 9.38189 10.84855
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.014749 B = 0.008649 C = 0.005953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1898.034914 B = 3236.666920 C = 4702.155969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.071 3.929
3 Si 0.892 3.108
4 H -0.286 1.286
5 H -0.274 1.274
6 H -0.276 1.276
7 C -0.547 4.547
8 H 0.075 0.925
9 C 0.216 3.784
10 H 0.023 0.977
11 C -0.108 4.108
12 C -0.039 4.039
13 S -0.298 6.298
14 C -0.073 4.073
15 C 0.064 3.936
16 N -0.517 5.517
17 C 0.155 3.845
18 C 0.219 3.781
19 N -0.496 5.496
20 C -0.048 4.048
21 C -0.093 4.093
22 O -0.195 6.195
23 H 0.264 0.736
24 H 0.054 0.946
25 H 0.084 0.916
26 H 0.085 0.915
27 H 0.077 0.923
28 H 0.095 0.905
29 H 0.080 0.920
30 H 0.059 0.941
31 H 0.035 0.965
32 H 0.079 0.921
33 H 0.120 0.880
34 H 0.177 0.823
35 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.177 -8.010 -0.202 9.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.133 4.133
3 Si 0.720 3.280
4 H -0.212 1.212
5 H -0.200 1.200
6 H -0.201 1.201
7 C -0.584 4.584
8 H 0.093 0.907
9 C 0.110 3.890
10 H 0.040 0.960
11 C -0.148 4.148
12 C -0.186 4.186
13 S -0.073 6.073
14 C -0.222 4.222
15 C -0.066 4.066
16 N -0.243 5.243
17 C 0.027 3.973
18 C 0.012 3.988
19 N -0.226 5.226
20 C -0.187 4.187
21 C -0.164 4.164
22 O -0.080 6.080
23 H 0.074 0.926
24 H 0.073 0.927
25 H 0.103 0.897
26 H 0.103 0.897
27 H 0.096 0.904
28 H 0.113 0.887
29 H 0.099 0.901
30 H 0.077 0.923
31 H 0.053 0.947
32 H 0.097 0.903
33 H 0.137 0.863
34 H 0.194 0.806
35 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges 4.593 -8.914 0.307 10.033
hybrid contribution 0.959 1.980 -0.896 2.375
sum 5.553 -6.935 -0.589 8.903
Atomic orbital electron populations
1.69935 1.05967 1.27168 1.48738 1.24946 0.94841 0.99236 0.94317
0.86642 0.79698 0.82850 0.78843 1.21178 1.19972 1.20120 1.21631
0.93629 0.90168 1.53011 0.90735 1.19127 0.89919 0.86436 0.93528
0.95975 1.20527 0.93269 1.00146 1.00813 1.22436 1.02161 0.90768
1.03267 1.86290 1.83127 1.17644 1.20208 1.23220 0.98378 1.04571
0.96025 1.22106 0.93381 0.96671 0.94487 1.62351 1.00973 1.14174
1.46777 1.20868 0.86081 0.87175 1.03222 1.27126 0.94435 0.98020
0.79251 1.70521 1.15904 1.06236 1.29971 1.23276 0.99746 1.00961
0.94675 1.24905 1.01807 0.92329 0.97372 1.84506 1.45329 1.37877
1.40334 0.92598 0.92744 0.89740 0.89688 0.90396 0.88703 0.90092
0.92277 0.94728 0.90274 0.86275 0.80629 0.77548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.02 12.06 55.43 0.67 -22.35 16
2 C 0.07 1.78 5.07 -17.82 -0.09 1.69 16
3 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16
4 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16
5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16
7 C -0.55 -13.38 7.53 -34.44 -0.26 -13.64 16
8 H 0.07 1.75 4.69 -52.49 -0.25 1.50 16
9 C 0.22 4.94 1.84 -69.59 -0.13 4.81 16
10 H 0.02 0.56 6.07 -51.93 -0.32 0.25 16
11 C -0.11 -2.38 4.38 -30.10 -0.13 -2.51 16
12 C -0.04 -0.77 6.15 33.78 0.21 -0.56 16
13 S -0.30 -5.63 21.84 -107.50 -2.35 -7.98 16
14 C -0.07 -1.31 5.60 37.48 0.21 -1.10 16
15 C 0.06 1.22 4.58 -3.53 -0.02 1.21 16
16 N -0.52 -10.67 4.14 -230.18 -0.95 -11.62 16
17 C 0.15 3.01 4.19 -4.97 -0.02 2.99 16
18 C 0.22 4.00 6.71 -12.95 -0.09 3.92 16
19 N -0.50 -8.78 10.81 -11.10 -0.12 -8.90 16
20 C -0.05 -0.68 11.89 -17.77 -0.21 -0.89 16
21 C -0.09 -1.23 12.18 29.35 0.36 -0.88 16
22 O -0.20 -3.35 10.78 5.37 0.06 -3.29 16
23 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
24 H 0.05 1.23 7.88 -51.93 -0.41 0.82 16
25 H 0.08 2.07 6.39 -51.93 -0.33 1.74 16
26 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16
27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16
28 H 0.09 1.48 8.14 -51.74 -0.42 1.06 16
29 H 0.08 1.50 7.03 -51.74 -0.36 1.14 16
30 H 0.06 1.15 7.25 -51.93 -0.38 0.77 16
31 H 0.03 0.67 7.89 -51.93 -0.41 0.26 16
32 H 0.08 1.58 7.81 -51.93 -0.41 1.18 16
33 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16
34 H 0.18 1.86 8.06 -52.48 -0.42 1.43 16
35 H 0.21 1.76 8.06 -52.49 -0.42 1.33 16
LS Contribution 290.41 15.07 4.38 4.38
Total: -1.00 -27.23 290.41 -7.92 -35.15
By element:
Atomic # 1 Polarization: 9.29 SS G_CDS: -4.42 Total: 4.88 kcal
Atomic # 6 Polarization: -4.79 SS G_CDS: -0.17 Total: -4.96 kcal
Atomic # 7 Polarization: -42.47 SS G_CDS: -0.40 Total: -42.87 kcal
Atomic # 8 Polarization: -3.35 SS G_CDS: 0.06 Total: -3.29 kcal
Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal
Atomic # 16 Polarization: -5.63 SS G_CDS: -2.35 Total: -7.98 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -27.23 -7.92 -35.15 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259936972.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.524 kcal
(2) G-P(sol) polarization free energy of solvation -27.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.297 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds