Wall clock time and date at job start Mon Mar 30 2020 04:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46973 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47060 * 119.99863 * 3 2 1 6 6 H 1.48496 * 109.47096 * 240.00060 * 3 2 1 7 7 C 1.37873 * 120.00263 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00050 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.94949 * 56.03254 * 9 7 2 11 11 C 1.53025 * 109.96966 * 294.81115 * 9 7 2 12 12 C 1.45856 * 115.26509 * 148.15083 * 11 9 7 13 13 S 1.83747 * 109.14545 * 64.21496 * 12 11 9 14 14 C 1.80174 * 102.69416 * 292.59185 * 13 12 11 15 15 C 1.53612 * 113.03907 * 84.92826 * 14 13 12 16 16 N 1.45536 * 109.96862 * 177.35317 * 9 7 2 17 17 C 1.46905 * 110.99893 * 346.70181 * 16 9 7 18 18 C 1.50705 * 109.46784 * 178.08420 * 17 16 9 19 19 N 1.30253 * 125.61755 * 90.00685 * 18 17 16 20 20 C 1.34475 * 108.69931 * 179.97438 * 19 18 17 21 21 C 1.34331 * 107.67071 * 359.97438 * 20 19 18 22 22 O 1.33963 * 125.61802 * 269.69149 * 18 17 16 23 23 H 0.97005 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09002 * 108.32083 * 269.65696 * 11 9 7 25 25 H 1.09000 * 108.31519 * 26.65044 * 11 9 7 26 26 H 1.09000 * 109.52475 * 184.11408 * 12 11 9 27 27 H 1.08998 * 109.52731 * 304.24550 * 12 11 9 28 28 H 1.08997 * 108.77254 * 205.84938 * 14 13 12 29 29 H 1.09008 * 108.76644 * 324.01114 * 14 13 12 30 30 H 1.08993 * 108.15038 * 77.31923 * 15 14 13 31 31 H 1.08998 * 108.15128 * 194.08494 * 15 14 13 32 32 H 1.08992 * 109.47067 * 298.08384 * 17 16 9 33 33 H 1.09000 * 109.46926 * 58.08588 * 17 16 9 34 34 H 1.08003 * 126.16424 * 180.02562 * 20 19 18 35 35 H 1.07999 * 126.44240 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5691 -2.5348 -0.8500 11 6 0.4676 -2.6503 1.3052 12 6 -0.7859 -3.3880 1.1972 13 16 -0.4240 -5.1237 0.7146 14 6 0.2064 -4.9447 -0.9637 15 6 1.7090 -4.6290 -1.0111 16 7 2.1860 -3.6127 -0.0643 17 6 3.5329 -3.1493 -0.4238 18 6 4.4810 -4.3207 -0.4339 19 7 4.7423 -5.0762 -1.4623 20 6 5.6319 -6.0146 -1.0930 21 6 5.9175 -5.8174 0.2047 22 8 5.1983 -4.7530 0.6116 23 1 -0.4851 0.8401 -0.0004 24 1 1.1037 -3.1593 2.0295 25 1 0.2472 -1.6544 1.6897 26 1 -1.2993 -3.3768 2.1587 27 1 -1.4184 -2.9230 0.4411 28 1 0.0256 -5.8721 -1.5071 29 1 -0.3369 -4.1395 -1.4584 30 1 2.2561 -5.5526 -0.8221 31 1 1.9536 -4.2920 -2.0184 32 1 3.5082 -2.6933 -1.4134 33 1 3.8712 -2.4144 0.3067 34 1 6.0432 -6.7871 -1.7259 35 1 6.5986 -6.3999 0.8074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:41 Heat of formation + Delta-G solvation = 29.892693 kcal Electronic energy + Delta-G solvation = -19089.749025 eV Core-core repulsion = 16215.835455 eV Total energy + Delta-G solvation = -2873.913570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.18023 -39.69210 -35.73816 -35.17781 -33.94409 -32.67445 -30.97741 -28.49092 -27.18458 -24.81478 -23.56464 -23.31945 -22.06957 -20.92448 -18.96050 -17.92226 -17.67054 -17.19944 -16.96156 -16.29924 -15.96470 -15.83214 -15.60574 -15.03966 -14.71769 -14.26351 -13.98365 -13.94675 -13.43764 -13.16195 -13.03650 -12.80298 -12.70115 -12.40073 -12.17201 -11.87751 -11.68442 -11.52647 -11.49829 -10.95523 -10.68673 -10.34254 -9.76334 -9.06525 -8.49807 -8.14162 -6.27711 0.58315 0.95934 1.44700 1.46191 1.51896 1.68619 1.77771 1.95525 2.41775 3.10979 3.16549 3.39148 3.87337 4.05697 4.12670 4.19826 4.23787 4.42088 4.49922 4.56266 4.70048 4.72505 4.84070 4.90095 4.96795 5.06776 5.10193 5.33405 5.42175 5.46307 5.65031 5.79823 6.00469 6.28043 6.56619 6.87077 6.88057 7.43662 8.91343 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.008649 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.034914 B = 3236.666920 C = 4702.155969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.288 1.288 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.223 3.777 10 H -0.004 1.004 11 C -0.093 4.093 12 C -0.039 4.039 13 S -0.284 6.284 14 C -0.073 4.073 15 C 0.071 3.929 16 N -0.521 5.521 17 C 0.163 3.837 18 C 0.191 3.809 19 N -0.510 5.510 20 C -0.064 4.064 21 C -0.073 4.073 22 O -0.212 6.212 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.211 0.789 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -9.524 -0.022 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.099 0.901 9 C 0.116 3.884 10 H 0.014 0.986 11 C -0.133 4.133 12 C -0.186 4.186 13 S -0.058 6.058 14 C -0.222 4.222 15 C -0.059 4.059 16 N -0.246 5.246 17 C 0.035 3.965 18 C -0.016 4.016 19 N -0.242 5.242 20 C -0.202 4.202 21 C -0.143 4.143 22 O -0.097 6.097 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.228 0.772 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.972 -10.438 0.494 12.036 hybrid contribution 0.642 2.315 -0.971 2.591 sum 6.613 -8.123 -0.477 10.485 Atomic orbital electron populations 1.70044 1.07065 1.27567 1.49791 1.25606 0.95505 1.01990 0.94277 0.85755 0.78517 0.79439 0.78862 1.21342 1.19528 1.19816 1.22013 0.94253 0.91040 1.52256 0.90120 1.18914 0.89864 0.86862 0.92735 0.98643 1.20346 0.94136 0.98886 0.99968 1.22311 1.00803 0.91536 1.03992 1.86198 1.83057 1.15874 1.20661 1.23292 0.97328 1.05695 0.95844 1.22046 0.94112 0.96003 0.93729 1.62314 1.01235 1.13514 1.47583 1.20540 0.85874 0.88039 1.02049 1.26559 0.95997 0.98879 0.80116 1.70473 1.16685 1.06896 1.30105 1.23898 0.99378 1.01145 0.95791 1.25922 1.00290 0.90425 0.97692 1.84492 1.45697 1.39175 1.40328 0.92833 0.93427 0.92444 0.87906 0.91543 0.85812 0.91028 0.92187 0.95358 0.91568 0.87261 0.77227 0.72697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.46 12.06 21.45 0.26 -48.20 16 2 C 0.03 1.41 5.07 84.65 0.43 1.84 16 3 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 4 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -27.89 7.53 25.60 0.19 -27.69 16 8 H 0.08 3.86 4.69 -2.91 -0.01 3.85 16 9 C 0.22 10.45 1.84 44.43 0.08 10.53 16 10 H 0.00 -0.21 6.07 -2.39 -0.01 -0.23 16 11 C -0.09 -4.21 4.38 28.41 0.12 -4.09 16 12 C -0.04 -1.54 6.15 69.79 0.43 -1.11 16 13 S -0.28 -10.38 21.84 -56.49 -1.23 -11.62 16 14 C -0.07 -2.55 5.60 72.19 0.40 -2.15 16 15 C 0.07 2.71 4.58 86.52 0.40 3.11 16 16 N -0.52 -21.72 4.14 -882.15 -3.65 -25.37 16 17 C 0.16 6.47 4.19 85.56 0.36 6.82 16 18 C 0.19 6.88 6.71 88.34 0.59 7.47 16 19 N -0.51 -17.38 10.81 -303.83 -3.28 -20.66 16 20 C -0.06 -1.62 11.89 83.40 0.99 -0.63 16 21 C -0.07 -1.69 12.18 66.93 0.81 -0.88 16 22 O -0.21 -6.92 10.78 -3.71 -0.04 -6.96 16 23 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 24 H 0.05 2.17 7.88 -2.39 -0.02 2.15 16 25 H 0.06 2.89 6.39 -2.39 -0.02 2.88 16 26 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.12 3.60 8.14 -2.51 -0.02 3.58 16 29 H 0.07 2.66 7.03 -2.50 -0.02 2.64 16 30 H 0.06 2.27 7.25 -2.39 -0.02 2.25 16 31 H 0.03 1.11 7.89 -2.39 -0.02 1.09 16 32 H 0.07 2.74 7.81 -2.39 -0.02 2.72 16 33 H 0.11 4.44 5.97 -2.39 -0.01 4.43 16 34 H 0.21 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.26 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -58.81 290.41 -0.01 -58.83 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.10 Total: 17.87 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.81 Total: -6.78 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -6.68 Total: -94.24 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.04 Total: -6.96 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -1.23 Total: -11.62 kcal Total: -58.81 -0.01 -58.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.721 kcal (2) G-P(sol) polarization free energy of solvation -58.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds