Wall clock time and date at job start Mon Mar 30 2020 04:49:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86808 * 119.99831 * 2 1
4 4 H 1.48496 * 109.46973 * 359.97438 * 3 2 1
5 5 H 1.48498 * 109.47060 * 119.99863 * 3 2 1
6 6 H 1.48496 * 109.47096 * 240.00060 * 3 2 1
7 7 C 1.37873 * 120.00263 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1
9 9 C 1.50695 * 120.00050 * 359.97438 * 7 2 1
10 10 H 1.08997 * 109.94949 * 56.03254 * 9 7 2
11 11 C 1.53025 * 109.96966 * 294.81115 * 9 7 2
12 12 C 1.45856 * 115.26509 * 148.15083 * 11 9 7
13 13 S 1.83747 * 109.14545 * 64.21496 * 12 11 9
14 14 C 1.80174 * 102.69416 * 292.59185 * 13 12 11
15 15 C 1.53612 * 113.03907 * 84.92826 * 14 13 12
16 16 N 1.45536 * 109.96862 * 177.35317 * 9 7 2
17 17 C 1.46905 * 110.99893 * 346.70181 * 16 9 7
18 18 C 1.50705 * 109.46784 * 178.08420 * 17 16 9
19 19 N 1.30253 * 125.61755 * 90.00685 * 18 17 16
20 20 C 1.34475 * 108.69931 * 179.97438 * 19 18 17
21 21 C 1.34331 * 107.67071 * 359.97438 * 20 19 18
22 22 O 1.33963 * 125.61802 * 269.69149 * 18 17 16
23 23 H 0.97005 * 120.00284 * 0.02562 * 1 2 3
24 24 H 1.09002 * 108.32083 * 269.65696 * 11 9 7
25 25 H 1.09000 * 108.31519 * 26.65044 * 11 9 7
26 26 H 1.09000 * 109.52475 * 184.11408 * 12 11 9
27 27 H 1.08998 * 109.52731 * 304.24550 * 12 11 9
28 28 H 1.08997 * 108.77254 * 205.84938 * 14 13 12
29 29 H 1.09008 * 108.76644 * 324.01114 * 14 13 12
30 30 H 1.08993 * 108.15038 * 77.31923 * 15 14 13
31 31 H 1.08998 * 108.15128 * 194.08494 * 15 14 13
32 32 H 1.08992 * 109.47067 * 298.08384 * 17 16 9
33 33 H 1.09000 * 109.46926 * 58.08588 * 17 16 9
34 34 H 1.08003 * 126.16424 * 180.02562 * 20 19 18
35 35 H 1.07999 * 126.44240 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 1.2841 2.7465 -0.0006
5 1 3.1028 1.6965 1.2125
6 1 3.1028 1.6965 -1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 1 0.5691 -2.5348 -0.8500
11 6 0.4676 -2.6503 1.3052
12 6 -0.7859 -3.3880 1.1972
13 16 -0.4240 -5.1237 0.7146
14 6 0.2064 -4.9447 -0.9637
15 6 1.7090 -4.6290 -1.0111
16 7 2.1860 -3.6127 -0.0643
17 6 3.5329 -3.1493 -0.4238
18 6 4.4810 -4.3207 -0.4339
19 7 4.7423 -5.0762 -1.4623
20 6 5.6319 -6.0146 -1.0930
21 6 5.9175 -5.8174 0.2047
22 8 5.1983 -4.7530 0.6116
23 1 -0.4851 0.8401 -0.0004
24 1 1.1037 -3.1593 2.0295
25 1 0.2472 -1.6544 1.6897
26 1 -1.2993 -3.3768 2.1587
27 1 -1.4184 -2.9230 0.4411
28 1 0.0256 -5.8721 -1.5071
29 1 -0.3369 -4.1395 -1.4584
30 1 2.2561 -5.5526 -0.8221
31 1 1.9536 -4.2920 -2.0184
32 1 3.5082 -2.6933 -1.4134
33 1 3.8712 -2.4144 0.3067
34 1 6.0432 -6.7871 -1.7259
35 1 6.5986 -6.3999 0.8074
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259936972.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:41
Heat of formation + Delta-G solvation = 29.892693 kcal
Electronic energy + Delta-G solvation = -19089.749025 eV
Core-core repulsion = 16215.835455 eV
Total energy + Delta-G solvation = -2873.913570 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-44.18023 -39.69210 -35.73816 -35.17781 -33.94409 -32.67445 -30.97741 -28.49092
-27.18458 -24.81478 -23.56464 -23.31945 -22.06957 -20.92448 -18.96050 -17.92226
-17.67054 -17.19944 -16.96156 -16.29924 -15.96470 -15.83214 -15.60574 -15.03966
-14.71769 -14.26351 -13.98365 -13.94675 -13.43764 -13.16195 -13.03650 -12.80298
-12.70115 -12.40073 -12.17201 -11.87751 -11.68442 -11.52647 -11.49829 -10.95523
-10.68673 -10.34254 -9.76334 -9.06525 -8.49807 -8.14162 -6.27711 0.58315
0.95934 1.44700 1.46191 1.51896 1.68619 1.77771 1.95525 2.41775
3.10979 3.16549 3.39148 3.87337 4.05697 4.12670 4.19826 4.23787
4.42088 4.49922 4.56266 4.70048 4.72505 4.84070 4.90095 4.96795
5.06776 5.10193 5.33405 5.42175 5.46307 5.65031 5.79823 6.00469
6.28043 6.56619 6.87077 6.88057 7.43662 8.91343
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.014749 B = 0.008649 C = 0.005953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1898.034914 B = 3236.666920 C = 4702.155969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.028 3.972
3 Si 0.948 3.052
4 H -0.288 1.288
5 H -0.270 1.270
6 H -0.273 1.273
7 C -0.558 4.558
8 H 0.081 0.919
9 C 0.223 3.777
10 H -0.004 1.004
11 C -0.093 4.093
12 C -0.039 4.039
13 S -0.284 6.284
14 C -0.073 4.073
15 C 0.071 3.929
16 N -0.521 5.521
17 C 0.163 3.837
18 C 0.191 3.809
19 N -0.510 5.510
20 C -0.064 4.064
21 C -0.073 4.073
22 O -0.212 6.212
23 H 0.263 0.737
24 H 0.047 0.953
25 H 0.057 0.943
26 H 0.103 0.897
27 H 0.066 0.934
28 H 0.124 0.876
29 H 0.071 0.929
30 H 0.060 0.940
31 H 0.028 0.972
32 H 0.066 0.934
33 H 0.110 0.890
34 H 0.211 0.789
35 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.542 -9.524 -0.022 11.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.174 4.174
3 Si 0.774 3.226
4 H -0.213 1.213
5 H -0.195 1.195
6 H -0.198 1.198
7 C -0.596 4.596
8 H 0.099 0.901
9 C 0.116 3.884
10 H 0.014 0.986
11 C -0.133 4.133
12 C -0.186 4.186
13 S -0.058 6.058
14 C -0.222 4.222
15 C -0.059 4.059
16 N -0.246 5.246
17 C 0.035 3.965
18 C -0.016 4.016
19 N -0.242 5.242
20 C -0.202 4.202
21 C -0.143 4.143
22 O -0.097 6.097
23 H 0.072 0.928
24 H 0.066 0.934
25 H 0.076 0.924
26 H 0.121 0.879
27 H 0.085 0.915
28 H 0.142 0.858
29 H 0.090 0.910
30 H 0.078 0.922
31 H 0.046 0.954
32 H 0.084 0.916
33 H 0.127 0.873
34 H 0.228 0.772
35 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges 5.972 -10.438 0.494 12.036
hybrid contribution 0.642 2.315 -0.971 2.591
sum 6.613 -8.123 -0.477 10.485
Atomic orbital electron populations
1.70044 1.07065 1.27567 1.49791 1.25606 0.95505 1.01990 0.94277
0.85755 0.78517 0.79439 0.78862 1.21342 1.19528 1.19816 1.22013
0.94253 0.91040 1.52256 0.90120 1.18914 0.89864 0.86862 0.92735
0.98643 1.20346 0.94136 0.98886 0.99968 1.22311 1.00803 0.91536
1.03992 1.86198 1.83057 1.15874 1.20661 1.23292 0.97328 1.05695
0.95844 1.22046 0.94112 0.96003 0.93729 1.62314 1.01235 1.13514
1.47583 1.20540 0.85874 0.88039 1.02049 1.26559 0.95997 0.98879
0.80116 1.70473 1.16685 1.06896 1.30105 1.23898 0.99378 1.01145
0.95791 1.25922 1.00290 0.90425 0.97692 1.84492 1.45697 1.39175
1.40328 0.92833 0.93427 0.92444 0.87906 0.91543 0.85812 0.91028
0.92187 0.95358 0.91568 0.87261 0.77227 0.72697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.46 12.06 21.45 0.26 -48.20 16
2 C 0.03 1.41 5.07 84.65 0.43 1.84 16
3 Si 0.95 40.87 29.54 68.60 2.03 42.90 16
4 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16
5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
7 C -0.56 -27.89 7.53 25.60 0.19 -27.69 16
8 H 0.08 3.86 4.69 -2.91 -0.01 3.85 16
9 C 0.22 10.45 1.84 44.43 0.08 10.53 16
10 H 0.00 -0.21 6.07 -2.39 -0.01 -0.23 16
11 C -0.09 -4.21 4.38 28.41 0.12 -4.09 16
12 C -0.04 -1.54 6.15 69.79 0.43 -1.11 16
13 S -0.28 -10.38 21.84 -56.49 -1.23 -11.62 16
14 C -0.07 -2.55 5.60 72.19 0.40 -2.15 16
15 C 0.07 2.71 4.58 86.52 0.40 3.11 16
16 N -0.52 -21.72 4.14 -882.15 -3.65 -25.37 16
17 C 0.16 6.47 4.19 85.56 0.36 6.82 16
18 C 0.19 6.88 6.71 88.34 0.59 7.47 16
19 N -0.51 -17.38 10.81 -303.83 -3.28 -20.66 16
20 C -0.06 -1.62 11.89 83.40 0.99 -0.63 16
21 C -0.07 -1.69 12.18 66.93 0.81 -0.88 16
22 O -0.21 -6.92 10.78 -3.71 -0.04 -6.96 16
23 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16
24 H 0.05 2.17 7.88 -2.39 -0.02 2.15 16
25 H 0.06 2.89 6.39 -2.39 -0.02 2.88 16
26 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16
27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16
28 H 0.12 3.60 8.14 -2.51 -0.02 3.58 16
29 H 0.07 2.66 7.03 -2.50 -0.02 2.64 16
30 H 0.06 2.27 7.25 -2.39 -0.02 2.25 16
31 H 0.03 1.11 7.89 -2.39 -0.02 1.09 16
32 H 0.07 2.74 7.81 -2.39 -0.02 2.72 16
33 H 0.11 4.44 5.97 -2.39 -0.01 4.43 16
34 H 0.21 3.60 8.06 -2.91 -0.02 3.58 16
35 H 0.26 3.00 8.06 -2.91 -0.02 2.97 16
Total: -1.00 -58.81 290.41 -0.01 -58.83
By element:
Atomic # 1 Polarization: 16.78 SS G_CDS: 1.10 Total: 17.87 kcal
Atomic # 6 Polarization: -11.60 SS G_CDS: 4.81 Total: -6.78 kcal
Atomic # 7 Polarization: -87.56 SS G_CDS: -6.68 Total: -94.24 kcal
Atomic # 8 Polarization: -6.92 SS G_CDS: -0.04 Total: -6.96 kcal
Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal
Atomic # 16 Polarization: -10.38 SS G_CDS: -1.23 Total: -11.62 kcal
Total: -58.81 -0.01 -58.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259936972.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.721 kcal
(2) G-P(sol) polarization free energy of solvation -58.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.893 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds