Wall clock time and date at job start Mon Mar 30 2020 04:49:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1
5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1
6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 H 1.09000 * 110.36488 * 302.08557 * 9 7 2
11 11 C 1.52003 * 110.41939 * 64.63839 * 9 7 2
12 12 C 1.54479 * 108.53057 * 225.05460 * 11 9 7
13 13 S 1.82349 * 110.14882 * 321.24876 * 12 11 9
14 14 C 1.79573 * 106.38523 * 319.47897 * 13 12 11
15 15 C 1.55076 * 109.78777 * 87.88670 * 14 13 12
16 16 N 1.39454 * 110.08715 * 288.47261 * 15 14 13
17 17 C 1.46898 * 111.00262 * 193.46933 * 16 15 14
18 18 C 1.50695 * 109.47166 * 37.69555 * 17 16 15
19 19 C 1.34334 * 126.43944 * 89.71283 * 18 17 16
20 20 N 1.34484 * 107.66641 * 179.87997 * 19 18 17
21 21 C 1.30250 * 108.70102 * 0.38994 * 20 19 18
22 22 O 1.33970 * 108.76236 * 359.75692 * 21 20 19
23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
24 24 H 1.08997 * 109.62768 * 344.76320 * 11 9 7
25 25 H 1.08998 * 109.62845 * 105.33732 * 11 9 7
26 26 H 1.09001 * 109.35853 * 201.04581 * 12 11 9
27 27 H 1.08996 * 109.36293 * 81.46106 * 12 11 9
28 28 H 1.08995 * 109.41546 * 327.79189 * 14 13 12
29 29 H 1.09002 * 109.41991 * 207.98619 * 14 13 12
30 30 H 1.09003 * 109.37132 * 168.28723 * 15 14 13
31 31 H 1.08999 * 109.27025 * 48.60242 * 15 14 13
32 32 H 1.09004 * 109.46819 * 157.70211 * 17 16 15
33 33 H 1.09001 * 109.46950 * 277.69720 * 17 16 15
34 34 H 1.07998 * 126.16930 * 359.97438 * 19 18 17
35 35 H 1.07997 * 125.62012 * 179.74237 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 1 0.5875 -2.5580 0.8575
11 6 0.4629 -2.6507 -1.2963
12 6 -0.9572 -3.1499 -0.9489
13 16 -0.8805 -4.3711 0.4031
14 6 0.5494 -5.4054 0.0709
15 6 1.8150 -4.7701 0.7031
16 7 2.1865 -3.6310 -0.0104
17 6 3.5403 -3.1965 0.3590
18 6 4.4121 -4.4051 0.5827
19 6 5.1511 -5.0383 -0.3433
20 7 5.7788 -6.0606 0.2646
21 6 5.4384 -6.0714 1.5218
22 8 4.5926 -5.0574 1.7480
23 1 -0.4850 0.8401 -0.0004
24 1 0.3988 -1.6870 -1.8014
25 1 0.9572 -3.3746 -1.9442
26 1 -1.4028 -3.6131 -1.8292
27 1 -1.5713 -2.3048 -0.6380
28 1 0.6889 -5.4958 -1.0063
29 1 0.3883 -6.3948 0.4989
30 1 2.6313 -5.4922 0.6815
31 1 1.6021 -4.4961 1.7364
32 1 3.9590 -2.5899 -0.4441
33 1 3.4954 -2.6064 1.2744
34 1 5.2285 -4.7733 -1.3874
35 1 5.7812 -6.7811 2.2602
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259937015.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:44
Heat of formation + Delta-G solvation = 50.600321 kcal
Electronic energy + Delta-G solvation = -19169.786532 eV
Core-core repulsion = 16296.770912 eV
Total energy + Delta-G solvation = -2873.015620 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-43.13542 -38.25192 -34.45694 -33.64472 -31.98735 -31.00773 -29.44127 -26.57535
-25.36626 -23.26921 -22.39491 -22.06236 -20.62946 -19.51135 -17.49414 -16.82642
-16.30271 -15.49309 -15.23794 -15.01389 -14.40200 -14.12945 -14.01793 -13.55336
-13.35580 -12.72607 -12.58247 -12.26833 -11.66364 -11.46278 -11.31663 -11.13841
-11.07697 -10.80990 -10.70885 -10.64240 -10.27515 -10.04494 -9.86603 -9.03554
-8.93047 -8.57635 -8.48969 -7.29288 -6.81604 -6.16566 -4.22266 1.71589
2.41023 2.92813 3.02850 3.21773 3.29894 3.31229 3.39869 4.29433
4.42916 4.82507 5.14499 5.21046 5.37546 5.41164 5.66917 5.72857
5.77574 5.93691 5.98617 6.07752 6.10833 6.33533 6.41611 6.49167
6.52713 6.56946 6.95303 7.05525 7.26393 7.59068 7.72536 7.80890
7.91304 8.17939 8.55078 8.83239 9.43811 10.90879
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.015871 B = 0.008423 C = 0.005908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1763.756334 B = 3323.592468 C = 4737.881327
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.070 3.930
3 Si 0.892 3.108
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.538 4.538
8 H 0.070 0.930
9 C 0.220 3.780
10 H 0.054 0.946
11 C -0.094 4.094
12 C -0.061 4.061
13 S -0.287 6.287
14 C -0.081 4.081
15 C 0.089 3.911
16 N -0.565 5.565
17 C 0.157 3.843
18 C -0.022 4.022
19 C -0.046 4.046
20 N -0.490 5.490
21 C 0.147 3.853
22 O -0.207 6.207
23 H 0.262 0.738
24 H 0.082 0.918
25 H 0.047 0.953
26 H 0.056 0.944
27 H 0.106 0.894
28 H 0.084 0.916
29 H 0.092 0.908
30 H 0.062 0.938
31 H 0.025 0.975
32 H 0.110 0.890
33 H 0.063 0.937
34 H 0.181 0.819
35 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.384 -8.331 0.563 9.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.516 5.516
2 C -0.134 4.134
3 Si 0.720 3.280
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.576 4.576
8 H 0.088 0.912
9 C 0.115 3.885
10 H 0.071 0.929
11 C -0.134 4.134
12 C -0.209 4.209
13 S -0.060 6.060
14 C -0.230 4.230
15 C -0.043 4.043
16 N -0.291 5.291
17 C 0.030 3.970
18 C -0.076 4.076
19 C -0.185 4.185
20 N -0.219 5.219
21 C -0.079 4.079
22 O -0.093 6.093
23 H 0.072 0.928
24 H 0.101 0.899
25 H 0.065 0.935
26 H 0.075 0.925
27 H 0.125 0.875
28 H 0.103 0.897
29 H 0.110 0.890
30 H 0.080 0.920
31 H 0.043 0.957
32 H 0.128 0.872
33 H 0.081 0.919
34 H 0.198 0.802
35 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges 3.877 -8.859 0.740 9.698
hybrid contribution 0.780 1.578 -0.011 1.761
sum 4.656 -7.280 0.729 8.673
Atomic orbital electron populations
1.69957 1.05845 1.26830 1.49000 1.24900 0.94829 0.99023 0.94679
0.86590 0.79863 0.83381 0.78165 1.20605 1.21202 1.19884 1.21476
0.93460 0.90019 1.52692 0.91214 1.19569 0.89378 0.84935 0.94579
0.92890 1.22088 0.90643 1.00530 1.00176 1.23984 1.03323 0.97908
0.95701 1.85854 1.37395 1.39013 1.43729 1.23532 0.95784 0.99372
1.04310 1.20977 0.95346 0.92956 0.95057 1.58521 1.02713 1.08951
1.58875 1.20762 0.86918 0.87379 1.01903 1.24236 1.01872 0.98616
0.82836 1.23007 0.99646 0.94562 1.01288 1.70391 1.24298 1.21276
1.05912 1.27894 0.92837 0.92000 0.95198 1.84515 1.52361 1.36271
1.36160 0.92784 0.89946 0.93471 0.92533 0.87534 0.89738 0.88968
0.92018 0.95737 0.87238 0.91871 0.80150 0.74169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -23.08 12.30 55.43 0.68 -22.39 16
2 C 0.07 1.76 5.05 -17.82 -0.09 1.67 16
3 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16
4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16
7 C -0.54 -13.19 7.43 -34.44 -0.26 -13.45 16
8 H 0.07 1.64 4.94 -52.49 -0.26 1.38 16
9 C 0.22 5.01 1.95 -69.40 -0.14 4.87 16
10 H 0.05 1.37 6.05 -51.46 -0.31 1.06 16
11 C -0.09 -2.04 4.88 -26.46 -0.13 -2.17 16
12 C -0.06 -1.23 6.65 37.93 0.25 -0.98 16
13 S -0.29 -5.56 20.05 -107.50 -2.16 -7.71 16
14 C -0.08 -1.39 6.02 38.26 0.23 -1.16 16
15 C 0.09 1.62 4.76 -6.56 -0.03 1.59 16
16 N -0.56 -11.11 3.52 -234.54 -0.83 -11.93 16
17 C 0.16 2.89 4.46 -4.98 -0.02 2.87 16
18 C -0.02 -0.36 4.62 -35.69 -0.16 -0.53 16
19 C -0.05 -0.72 11.80 -17.77 -0.21 -0.93 16
20 N -0.49 -7.45 11.29 -14.97 -0.17 -7.62 16
21 C 0.15 1.89 13.23 52.09 0.69 2.58 16
22 O -0.21 -3.21 10.05 5.36 0.05 -3.16 16
23 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16
24 H 0.08 1.98 6.80 -51.93 -0.35 1.62 16
25 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16
26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
27 H 0.11 2.33 8.14 -51.93 -0.42 1.90 16
28 H 0.08 1.45 7.88 -51.80 -0.41 1.04 16
29 H 0.09 1.38 8.14 -51.80 -0.42 0.96 16
30 H 0.06 1.08 5.38 -51.93 -0.28 0.80 16
31 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16
32 H 0.11 2.00 6.86 -51.93 -0.36 1.64 16
33 H 0.06 1.27 7.27 -51.93 -0.38 0.89 16
34 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16
35 H 0.24 1.81 8.06 -52.49 -0.42 1.39 16
LS Contribution 288.49 15.07 4.35 4.35
Total: -1.00 -27.08 288.49 -7.35 -34.44
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -4.40 Total: 4.83 kcal
Atomic # 6 Polarization: -5.77 SS G_CDS: 0.13 Total: -5.64 kcal
Atomic # 7 Polarization: -41.64 SS G_CDS: -0.31 Total: -41.95 kcal
Atomic # 8 Polarization: -3.21 SS G_CDS: 0.05 Total: -3.16 kcal
Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal
Atomic # 16 Polarization: -5.56 SS G_CDS: -2.16 Total: -7.71 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -27.08 -7.35 -34.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259937015.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.037 kcal
(2) G-P(sol) polarization free energy of solvation -27.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.954 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds