Wall clock time and date at job start Mon Mar 30 2020 04:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 110.36488 * 302.08557 * 9 7 2 11 11 C 1.52003 * 110.41939 * 64.63839 * 9 7 2 12 12 C 1.54479 * 108.53057 * 225.05460 * 11 9 7 13 13 S 1.82349 * 110.14882 * 321.24876 * 12 11 9 14 14 C 1.79573 * 106.38523 * 319.47897 * 13 12 11 15 15 C 1.55076 * 109.78777 * 87.88670 * 14 13 12 16 16 N 1.39454 * 110.08715 * 288.47261 * 15 14 13 17 17 C 1.46898 * 111.00262 * 193.46933 * 16 15 14 18 18 C 1.50695 * 109.47166 * 37.69555 * 17 16 15 19 19 C 1.34334 * 126.43944 * 89.71283 * 18 17 16 20 20 N 1.34484 * 107.66641 * 179.87997 * 19 18 17 21 21 C 1.30250 * 108.70102 * 0.38994 * 20 19 18 22 22 O 1.33970 * 108.76236 * 359.75692 * 21 20 19 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.62768 * 344.76320 * 11 9 7 25 25 H 1.08998 * 109.62845 * 105.33732 * 11 9 7 26 26 H 1.09001 * 109.35853 * 201.04581 * 12 11 9 27 27 H 1.08996 * 109.36293 * 81.46106 * 12 11 9 28 28 H 1.08995 * 109.41546 * 327.79189 * 14 13 12 29 29 H 1.09002 * 109.41991 * 207.98619 * 14 13 12 30 30 H 1.09003 * 109.37132 * 168.28723 * 15 14 13 31 31 H 1.08999 * 109.27025 * 48.60242 * 15 14 13 32 32 H 1.09004 * 109.46819 * 157.70211 * 17 16 15 33 33 H 1.09001 * 109.46950 * 277.69720 * 17 16 15 34 34 H 1.07998 * 126.16930 * 359.97438 * 19 18 17 35 35 H 1.07997 * 125.62012 * 179.74237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5875 -2.5580 0.8575 11 6 0.4629 -2.6507 -1.2963 12 6 -0.9572 -3.1499 -0.9489 13 16 -0.8805 -4.3711 0.4031 14 6 0.5494 -5.4054 0.0709 15 6 1.8150 -4.7701 0.7031 16 7 2.1865 -3.6310 -0.0104 17 6 3.5403 -3.1965 0.3590 18 6 4.4121 -4.4051 0.5827 19 6 5.1511 -5.0383 -0.3433 20 7 5.7788 -6.0606 0.2646 21 6 5.4384 -6.0714 1.5218 22 8 4.5926 -5.0574 1.7480 23 1 -0.4850 0.8401 -0.0004 24 1 0.3988 -1.6870 -1.8014 25 1 0.9572 -3.3746 -1.9442 26 1 -1.4028 -3.6131 -1.8292 27 1 -1.5713 -2.3048 -0.6380 28 1 0.6889 -5.4958 -1.0063 29 1 0.3883 -6.3948 0.4989 30 1 2.6313 -5.4922 0.6815 31 1 1.6021 -4.4961 1.7364 32 1 3.9590 -2.5899 -0.4441 33 1 3.4954 -2.6064 1.2744 34 1 5.2285 -4.7733 -1.3874 35 1 5.7812 -6.7811 2.2602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:44 Heat of formation + Delta-G solvation = 50.600321 kcal Electronic energy + Delta-G solvation = -19169.786532 eV Core-core repulsion = 16296.770912 eV Total energy + Delta-G solvation = -2873.015620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.13542 -38.25192 -34.45694 -33.64472 -31.98735 -31.00773 -29.44127 -26.57535 -25.36626 -23.26921 -22.39491 -22.06236 -20.62946 -19.51135 -17.49414 -16.82642 -16.30271 -15.49309 -15.23794 -15.01389 -14.40200 -14.12945 -14.01793 -13.55336 -13.35580 -12.72607 -12.58247 -12.26833 -11.66364 -11.46278 -11.31663 -11.13841 -11.07697 -10.80990 -10.70885 -10.64240 -10.27515 -10.04494 -9.86603 -9.03554 -8.93047 -8.57635 -8.48969 -7.29288 -6.81604 -6.16566 -4.22266 1.71589 2.41023 2.92813 3.02850 3.21773 3.29894 3.31229 3.39869 4.29433 4.42916 4.82507 5.14499 5.21046 5.37546 5.41164 5.66917 5.72857 5.77574 5.93691 5.98617 6.07752 6.10833 6.33533 6.41611 6.49167 6.52713 6.56946 6.95303 7.05525 7.26393 7.59068 7.72536 7.80890 7.91304 8.17939 8.55078 8.83239 9.43811 10.90879 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.008423 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.756334 B = 3323.592468 C = 4737.881327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.220 3.780 10 H 0.054 0.946 11 C -0.094 4.094 12 C -0.061 4.061 13 S -0.287 6.287 14 C -0.081 4.081 15 C 0.089 3.911 16 N -0.565 5.565 17 C 0.157 3.843 18 C -0.022 4.022 19 C -0.046 4.046 20 N -0.490 5.490 21 C 0.147 3.853 22 O -0.207 6.207 23 H 0.262 0.738 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.181 0.819 35 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -8.331 0.563 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.115 3.885 10 H 0.071 0.929 11 C -0.134 4.134 12 C -0.209 4.209 13 S -0.060 6.060 14 C -0.230 4.230 15 C -0.043 4.043 16 N -0.291 5.291 17 C 0.030 3.970 18 C -0.076 4.076 19 C -0.185 4.185 20 N -0.219 5.219 21 C -0.079 4.079 22 O -0.093 6.093 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.198 0.802 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.877 -8.859 0.740 9.698 hybrid contribution 0.780 1.578 -0.011 1.761 sum 4.656 -7.280 0.729 8.673 Atomic orbital electron populations 1.69957 1.05845 1.26830 1.49000 1.24900 0.94829 0.99023 0.94679 0.86590 0.79863 0.83381 0.78165 1.20605 1.21202 1.19884 1.21476 0.93460 0.90019 1.52692 0.91214 1.19569 0.89378 0.84935 0.94579 0.92890 1.22088 0.90643 1.00530 1.00176 1.23984 1.03323 0.97908 0.95701 1.85854 1.37395 1.39013 1.43729 1.23532 0.95784 0.99372 1.04310 1.20977 0.95346 0.92956 0.95057 1.58521 1.02713 1.08951 1.58875 1.20762 0.86918 0.87379 1.01903 1.24236 1.01872 0.98616 0.82836 1.23007 0.99646 0.94562 1.01288 1.70391 1.24298 1.21276 1.05912 1.27894 0.92837 0.92000 0.95198 1.84515 1.52361 1.36271 1.36160 0.92784 0.89946 0.93471 0.92533 0.87534 0.89738 0.88968 0.92018 0.95737 0.87238 0.91871 0.80150 0.74169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.08 12.30 55.43 0.68 -22.39 16 2 C 0.07 1.76 5.05 -17.82 -0.09 1.67 16 3 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.19 7.43 -34.44 -0.26 -13.45 16 8 H 0.07 1.64 4.94 -52.49 -0.26 1.38 16 9 C 0.22 5.01 1.95 -69.40 -0.14 4.87 16 10 H 0.05 1.37 6.05 -51.46 -0.31 1.06 16 11 C -0.09 -2.04 4.88 -26.46 -0.13 -2.17 16 12 C -0.06 -1.23 6.65 37.93 0.25 -0.98 16 13 S -0.29 -5.56 20.05 -107.50 -2.16 -7.71 16 14 C -0.08 -1.39 6.02 38.26 0.23 -1.16 16 15 C 0.09 1.62 4.76 -6.56 -0.03 1.59 16 16 N -0.56 -11.11 3.52 -234.54 -0.83 -11.93 16 17 C 0.16 2.89 4.46 -4.98 -0.02 2.87 16 18 C -0.02 -0.36 4.62 -35.69 -0.16 -0.53 16 19 C -0.05 -0.72 11.80 -17.77 -0.21 -0.93 16 20 N -0.49 -7.45 11.29 -14.97 -0.17 -7.62 16 21 C 0.15 1.89 13.23 52.09 0.69 2.58 16 22 O -0.21 -3.21 10.05 5.36 0.05 -3.16 16 23 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.08 1.98 6.80 -51.93 -0.35 1.62 16 25 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 2.33 8.14 -51.93 -0.42 1.90 16 28 H 0.08 1.45 7.88 -51.80 -0.41 1.04 16 29 H 0.09 1.38 8.14 -51.80 -0.42 0.96 16 30 H 0.06 1.08 5.38 -51.93 -0.28 0.80 16 31 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.11 2.00 6.86 -51.93 -0.36 1.64 16 33 H 0.06 1.27 7.27 -51.93 -0.38 0.89 16 34 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16 35 H 0.24 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -27.08 288.49 -7.35 -34.44 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.40 Total: 4.83 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 0.13 Total: -5.64 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.31 Total: -41.95 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.05 Total: -3.16 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -2.16 Total: -7.71 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.08 -7.35 -34.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.037 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds