Wall clock time and date at job start Mon Mar 30 2020 04:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 110.36488 * 302.08557 * 9 7 2 11 11 C 1.52003 * 110.41939 * 64.63839 * 9 7 2 12 12 C 1.54479 * 108.53057 * 225.05460 * 11 9 7 13 13 S 1.82349 * 110.14882 * 321.24876 * 12 11 9 14 14 C 1.79573 * 106.38523 * 319.47897 * 13 12 11 15 15 C 1.55076 * 109.78777 * 87.88670 * 14 13 12 16 16 N 1.39454 * 110.08715 * 288.47261 * 15 14 13 17 17 C 1.46898 * 111.00262 * 193.46933 * 16 15 14 18 18 C 1.50695 * 109.47166 * 37.69555 * 17 16 15 19 19 C 1.34334 * 126.43944 * 89.71283 * 18 17 16 20 20 N 1.34484 * 107.66641 * 179.87997 * 19 18 17 21 21 C 1.30250 * 108.70102 * 0.38994 * 20 19 18 22 22 O 1.33970 * 108.76236 * 359.75692 * 21 20 19 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.62768 * 344.76320 * 11 9 7 25 25 H 1.08998 * 109.62845 * 105.33732 * 11 9 7 26 26 H 1.09001 * 109.35853 * 201.04581 * 12 11 9 27 27 H 1.08996 * 109.36293 * 81.46106 * 12 11 9 28 28 H 1.08995 * 109.41546 * 327.79189 * 14 13 12 29 29 H 1.09002 * 109.41991 * 207.98619 * 14 13 12 30 30 H 1.09003 * 109.37132 * 168.28723 * 15 14 13 31 31 H 1.08999 * 109.27025 * 48.60242 * 15 14 13 32 32 H 1.09004 * 109.46819 * 157.70211 * 17 16 15 33 33 H 1.09001 * 109.46950 * 277.69720 * 17 16 15 34 34 H 1.07998 * 126.16930 * 359.97438 * 19 18 17 35 35 H 1.07997 * 125.62012 * 179.74237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5875 -2.5580 0.8575 11 6 0.4629 -2.6507 -1.2963 12 6 -0.9572 -3.1499 -0.9489 13 16 -0.8805 -4.3711 0.4031 14 6 0.5494 -5.4054 0.0709 15 6 1.8150 -4.7701 0.7031 16 7 2.1865 -3.6310 -0.0104 17 6 3.5403 -3.1965 0.3590 18 6 4.4121 -4.4051 0.5827 19 6 5.1511 -5.0383 -0.3433 20 7 5.7788 -6.0606 0.2646 21 6 5.4384 -6.0714 1.5218 22 8 4.5926 -5.0574 1.7480 23 1 -0.4850 0.8401 -0.0004 24 1 0.3988 -1.6870 -1.8014 25 1 0.9572 -3.3746 -1.9442 26 1 -1.4028 -3.6131 -1.8292 27 1 -1.5713 -2.3048 -0.6380 28 1 0.6889 -5.4958 -1.0063 29 1 0.3883 -6.3948 0.4989 30 1 2.6313 -5.4922 0.6815 31 1 1.6021 -4.4961 1.7364 32 1 3.9590 -2.5899 -0.4441 33 1 3.4954 -2.6064 1.2744 34 1 5.2285 -4.7733 -1.3874 35 1 5.7812 -6.7811 2.2602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:44 Heat of formation + Delta-G solvation = 32.544303 kcal Electronic energy + Delta-G solvation = -19170.569500 eV Core-core repulsion = 16296.770912 eV Total energy + Delta-G solvation = -2873.798587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.30122 -39.85029 -35.62263 -35.39433 -33.63535 -32.56859 -30.85852 -28.27419 -26.81875 -24.96645 -23.61986 -23.41661 -22.07337 -21.17838 -18.88909 -18.16470 -17.74746 -17.09358 -16.87650 -16.50984 -15.83115 -15.80744 -15.40648 -14.94109 -14.75973 -14.46956 -14.05361 -13.73426 -13.16011 -13.10840 -12.94218 -12.78191 -12.55711 -12.36086 -12.33482 -12.24469 -11.84009 -11.64660 -11.41443 -10.82449 -10.49887 -10.49282 -9.76577 -8.90633 -8.39105 -8.09695 -6.19828 0.55787 0.89744 1.43583 1.46651 1.53497 1.79230 1.85364 1.91418 2.43539 3.21651 3.29689 3.48639 3.88032 3.95021 4.21987 4.28284 4.31149 4.35210 4.37013 4.48339 4.66733 4.76779 4.80772 4.91250 4.98857 5.13142 5.17881 5.28367 5.48462 5.52821 5.74363 5.87289 6.03980 6.35709 6.78214 6.87387 6.95321 7.49063 8.96568 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.008423 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.756334 B = 3323.592468 C = 4737.881327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.226 3.774 10 H 0.020 0.980 11 C -0.084 4.084 12 C -0.055 4.055 13 S -0.306 6.306 14 C -0.070 4.070 15 C 0.094 3.906 16 N -0.562 5.562 17 C 0.165 3.835 18 C -0.046 4.046 19 C -0.037 4.037 20 N -0.517 5.517 21 C 0.174 3.826 22 O -0.220 6.220 23 H 0.260 0.740 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.004 0.996 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.192 0.808 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -10.008 0.542 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.094 0.906 9 C 0.120 3.880 10 H 0.038 0.962 11 C -0.124 4.124 12 C -0.203 4.203 13 S -0.079 6.079 14 C -0.219 4.219 15 C -0.038 4.038 16 N -0.287 5.287 17 C 0.038 3.962 18 C -0.099 4.099 19 C -0.175 4.175 20 N -0.246 5.246 21 C -0.051 4.051 22 O -0.107 6.107 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.022 0.978 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.209 0.791 35 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 5.309 -10.545 0.705 11.827 hybrid contribution 0.427 1.988 0.076 2.035 sum 5.736 -8.557 0.782 10.331 Atomic orbital electron populations 1.70075 1.06951 1.27154 1.50172 1.25564 0.95490 1.01790 0.94759 0.85705 0.78759 0.79965 0.78080 1.20227 1.21682 1.19388 1.21854 0.94010 0.90953 1.51712 0.90642 1.19276 0.89415 0.85560 0.93726 0.96225 1.21890 0.91686 0.99370 0.99409 1.23818 1.01966 0.97703 0.96799 1.85912 1.38884 1.39053 1.44032 1.23600 0.93762 0.99752 1.04794 1.20967 0.96387 0.92700 0.93782 1.58503 1.02835 1.08320 1.59066 1.20471 0.86692 0.88454 1.00574 1.23681 1.03319 0.99175 0.83679 1.23206 0.98514 0.94099 1.01673 1.70457 1.25358 1.21663 1.07075 1.29103 0.89984 0.90623 0.95434 1.84514 1.53226 1.37053 1.35883 0.93106 0.92678 0.92502 0.90183 0.89901 0.89117 0.86092 0.90445 0.97818 0.87503 0.94293 0.79102 0.69228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 12.30 21.45 0.26 -48.55 16 2 C 0.02 1.28 5.05 84.66 0.43 1.71 16 3 Si 0.95 41.23 29.54 68.60 2.03 43.25 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -27.27 7.43 25.60 0.19 -27.08 16 8 H 0.08 3.60 4.94 -2.91 -0.01 3.58 16 9 C 0.23 10.45 1.95 43.85 0.09 10.53 16 10 H 0.02 1.07 6.05 -2.69 -0.02 1.05 16 11 C -0.08 -3.65 4.88 30.77 0.15 -3.50 16 12 C -0.05 -2.21 6.65 72.48 0.48 -1.73 16 13 S -0.31 -11.69 20.05 -56.49 -1.13 -12.82 16 14 C -0.07 -2.27 6.02 72.69 0.44 -1.83 16 15 C 0.09 3.31 4.76 88.35 0.42 3.73 16 16 N -0.56 -21.93 3.52 -895.95 -3.15 -25.08 16 17 C 0.16 6.05 4.46 85.56 0.38 6.43 16 18 C -0.05 -1.43 4.62 24.79 0.11 -1.32 16 19 C -0.04 -1.07 11.80 83.39 0.98 -0.08 16 20 N -0.52 -14.17 11.29 -316.06 -3.57 -17.74 16 21 C 0.17 3.85 13.23 130.48 1.73 5.57 16 22 O -0.22 -6.32 10.05 -3.74 -0.04 -6.36 16 23 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 24 H 0.05 2.70 6.80 -2.39 -0.02 2.69 16 25 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 26 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.09 2.86 7.88 -2.47 -0.02 2.84 16 29 H 0.12 3.24 8.14 -2.47 -0.02 3.22 16 30 H 0.08 2.54 5.38 -2.39 -0.01 2.53 16 31 H 0.00 0.15 8.11 -2.39 -0.02 0.13 16 32 H 0.11 3.90 6.86 -2.39 -0.02 3.89 16 33 H 0.04 1.60 7.27 -2.39 -0.02 1.58 16 34 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.29 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -58.76 288.49 0.89 -57.87 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.09 Total: 17.00 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.40 Total: -7.57 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -6.46 Total: -91.38 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.04 Total: -6.36 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: -11.69 SS G_CDS: -1.13 Total: -12.82 kcal Total: -58.76 0.89 -57.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.412 kcal (2) G-P(sol) polarization free energy of solvation -58.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds