Wall clock time and date at job start Mon Mar 30 2020 04:49:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1
5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1
6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 H 1.09000 * 110.36488 * 302.08557 * 9 7 2
11 11 C 1.52003 * 110.41939 * 64.63839 * 9 7 2
12 12 C 1.54479 * 108.53057 * 225.05460 * 11 9 7
13 13 S 1.82349 * 110.14882 * 321.24876 * 12 11 9
14 14 C 1.79573 * 106.38523 * 319.47897 * 13 12 11
15 15 C 1.55076 * 109.78777 * 87.88670 * 14 13 12
16 16 N 1.39454 * 110.08715 * 288.47261 * 15 14 13
17 17 C 1.46898 * 111.00262 * 193.46933 * 16 15 14
18 18 C 1.50695 * 109.47166 * 37.69555 * 17 16 15
19 19 C 1.34334 * 126.43944 * 89.71283 * 18 17 16
20 20 N 1.34484 * 107.66641 * 179.87997 * 19 18 17
21 21 C 1.30250 * 108.70102 * 0.38994 * 20 19 18
22 22 O 1.33970 * 108.76236 * 359.75692 * 21 20 19
23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
24 24 H 1.08997 * 109.62768 * 344.76320 * 11 9 7
25 25 H 1.08998 * 109.62845 * 105.33732 * 11 9 7
26 26 H 1.09001 * 109.35853 * 201.04581 * 12 11 9
27 27 H 1.08996 * 109.36293 * 81.46106 * 12 11 9
28 28 H 1.08995 * 109.41546 * 327.79189 * 14 13 12
29 29 H 1.09002 * 109.41991 * 207.98619 * 14 13 12
30 30 H 1.09003 * 109.37132 * 168.28723 * 15 14 13
31 31 H 1.08999 * 109.27025 * 48.60242 * 15 14 13
32 32 H 1.09004 * 109.46819 * 157.70211 * 17 16 15
33 33 H 1.09001 * 109.46950 * 277.69720 * 17 16 15
34 34 H 1.07998 * 126.16930 * 359.97438 * 19 18 17
35 35 H 1.07997 * 125.62012 * 179.74237 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 1 0.5875 -2.5580 0.8575
11 6 0.4629 -2.6507 -1.2963
12 6 -0.9572 -3.1499 -0.9489
13 16 -0.8805 -4.3711 0.4031
14 6 0.5494 -5.4054 0.0709
15 6 1.8150 -4.7701 0.7031
16 7 2.1865 -3.6310 -0.0104
17 6 3.5403 -3.1965 0.3590
18 6 4.4121 -4.4051 0.5827
19 6 5.1511 -5.0383 -0.3433
20 7 5.7788 -6.0606 0.2646
21 6 5.4384 -6.0714 1.5218
22 8 4.5926 -5.0574 1.7480
23 1 -0.4850 0.8401 -0.0004
24 1 0.3988 -1.6870 -1.8014
25 1 0.9572 -3.3746 -1.9442
26 1 -1.4028 -3.6131 -1.8292
27 1 -1.5713 -2.3048 -0.6380
28 1 0.6889 -5.4958 -1.0063
29 1 0.3883 -6.3948 0.4989
30 1 2.6313 -5.4922 0.6815
31 1 1.6021 -4.4961 1.7364
32 1 3.9590 -2.5899 -0.4441
33 1 3.4954 -2.6064 1.2744
34 1 5.2285 -4.7733 -1.3874
35 1 5.7812 -6.7811 2.2602
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259937015.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:44
Heat of formation + Delta-G solvation = 32.544303 kcal
Electronic energy + Delta-G solvation = -19170.569500 eV
Core-core repulsion = 16296.770912 eV
Total energy + Delta-G solvation = -2873.798587 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-44.30122 -39.85029 -35.62263 -35.39433 -33.63535 -32.56859 -30.85852 -28.27419
-26.81875 -24.96645 -23.61986 -23.41661 -22.07337 -21.17838 -18.88909 -18.16470
-17.74746 -17.09358 -16.87650 -16.50984 -15.83115 -15.80744 -15.40648 -14.94109
-14.75973 -14.46956 -14.05361 -13.73426 -13.16011 -13.10840 -12.94218 -12.78191
-12.55711 -12.36086 -12.33482 -12.24469 -11.84009 -11.64660 -11.41443 -10.82449
-10.49887 -10.49282 -9.76577 -8.90633 -8.39105 -8.09695 -6.19828 0.55787
0.89744 1.43583 1.46651 1.53497 1.79230 1.85364 1.91418 2.43539
3.21651 3.29689 3.48639 3.88032 3.95021 4.21987 4.28284 4.31149
4.35210 4.37013 4.48339 4.66733 4.76779 4.80772 4.91250 4.98857
5.13142 5.17881 5.28367 5.48462 5.52821 5.74363 5.87289 6.03980
6.35709 6.78214 6.87387 6.95321 7.49063 8.96568
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.015871 B = 0.008423 C = 0.005908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1763.756334 B = 3323.592468 C = 4737.881327
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.025 3.975
3 Si 0.948 3.052
4 H -0.276 1.276
5 H -0.291 1.291
6 H -0.269 1.269
7 C -0.547 4.547
8 H 0.076 0.924
9 C 0.226 3.774
10 H 0.020 0.980
11 C -0.084 4.084
12 C -0.055 4.055
13 S -0.306 6.306
14 C -0.070 4.070
15 C 0.094 3.906
16 N -0.562 5.562
17 C 0.165 3.835
18 C -0.046 4.046
19 C -0.037 4.037
20 N -0.517 5.517
21 C 0.174 3.826
22 O -0.220 6.220
23 H 0.260 0.740
24 H 0.055 0.945
25 H 0.056 0.944
26 H 0.080 0.920
27 H 0.082 0.918
28 H 0.090 0.910
29 H 0.121 0.879
30 H 0.078 0.922
31 H 0.004 0.996
32 H 0.107 0.893
33 H 0.039 0.961
34 H 0.192 0.808
35 H 0.293 0.707
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.800 -10.008 0.542 11.580
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.176 4.176
3 Si 0.775 3.225
4 H -0.202 1.202
5 H -0.217 1.217
6 H -0.194 1.194
7 C -0.585 4.585
8 H 0.094 0.906
9 C 0.120 3.880
10 H 0.038 0.962
11 C -0.124 4.124
12 C -0.203 4.203
13 S -0.079 6.079
14 C -0.219 4.219
15 C -0.038 4.038
16 N -0.287 5.287
17 C 0.038 3.962
18 C -0.099 4.099
19 C -0.175 4.175
20 N -0.246 5.246
21 C -0.051 4.051
22 O -0.107 6.107
23 H 0.069 0.931
24 H 0.073 0.927
25 H 0.075 0.925
26 H 0.098 0.902
27 H 0.101 0.899
28 H 0.109 0.891
29 H 0.139 0.861
30 H 0.096 0.904
31 H 0.022 0.978
32 H 0.125 0.875
33 H 0.057 0.943
34 H 0.209 0.791
35 H 0.308 0.692
Dipole moment (debyes) X Y Z Total
from point charges 5.309 -10.545 0.705 11.827
hybrid contribution 0.427 1.988 0.076 2.035
sum 5.736 -8.557 0.782 10.331
Atomic orbital electron populations
1.70075 1.06951 1.27154 1.50172 1.25564 0.95490 1.01790 0.94759
0.85705 0.78759 0.79965 0.78080 1.20227 1.21682 1.19388 1.21854
0.94010 0.90953 1.51712 0.90642 1.19276 0.89415 0.85560 0.93726
0.96225 1.21890 0.91686 0.99370 0.99409 1.23818 1.01966 0.97703
0.96799 1.85912 1.38884 1.39053 1.44032 1.23600 0.93762 0.99752
1.04794 1.20967 0.96387 0.92700 0.93782 1.58503 1.02835 1.08320
1.59066 1.20471 0.86692 0.88454 1.00574 1.23681 1.03319 0.99175
0.83679 1.23206 0.98514 0.94099 1.01673 1.70457 1.25358 1.21663
1.07075 1.29103 0.89984 0.90623 0.95434 1.84514 1.53226 1.37053
1.35883 0.93106 0.92678 0.92502 0.90183 0.89901 0.89117 0.86092
0.90445 0.97818 0.87503 0.94293 0.79102 0.69228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.82 12.30 21.45 0.26 -48.55 16
2 C 0.02 1.28 5.05 84.66 0.43 1.71 16
3 Si 0.95 41.23 29.54 68.60 2.03 43.25 16
4 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16
6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
7 C -0.55 -27.27 7.43 25.60 0.19 -27.08 16
8 H 0.08 3.60 4.94 -2.91 -0.01 3.58 16
9 C 0.23 10.45 1.95 43.85 0.09 10.53 16
10 H 0.02 1.07 6.05 -2.69 -0.02 1.05 16
11 C -0.08 -3.65 4.88 30.77 0.15 -3.50 16
12 C -0.05 -2.21 6.65 72.48 0.48 -1.73 16
13 S -0.31 -11.69 20.05 -56.49 -1.13 -12.82 16
14 C -0.07 -2.27 6.02 72.69 0.44 -1.83 16
15 C 0.09 3.31 4.76 88.35 0.42 3.73 16
16 N -0.56 -21.93 3.52 -895.95 -3.15 -25.08 16
17 C 0.16 6.05 4.46 85.56 0.38 6.43 16
18 C -0.05 -1.43 4.62 24.79 0.11 -1.32 16
19 C -0.04 -1.07 11.80 83.39 0.98 -0.08 16
20 N -0.52 -14.17 11.29 -316.06 -3.57 -17.74 16
21 C 0.17 3.85 13.23 130.48 1.73 5.57 16
22 O -0.22 -6.32 10.05 -3.74 -0.04 -6.36 16
23 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16
24 H 0.05 2.70 6.80 -2.39 -0.02 2.69 16
25 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16
26 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
27 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16
28 H 0.09 2.86 7.88 -2.47 -0.02 2.84 16
29 H 0.12 3.24 8.14 -2.47 -0.02 3.22 16
30 H 0.08 2.54 5.38 -2.39 -0.01 2.53 16
31 H 0.00 0.15 8.11 -2.39 -0.02 0.13 16
32 H 0.11 3.90 6.86 -2.39 -0.02 3.89 16
33 H 0.04 1.60 7.27 -2.39 -0.02 1.58 16
34 H 0.19 4.94 8.06 -2.91 -0.02 4.92 16
35 H 0.29 2.84 8.06 -2.91 -0.02 2.81 16
Total: -1.00 -58.76 288.49 0.89 -57.87
By element:
Atomic # 1 Polarization: 15.90 SS G_CDS: 1.09 Total: 17.00 kcal
Atomic # 6 Polarization: -12.97 SS G_CDS: 5.40 Total: -7.57 kcal
Atomic # 7 Polarization: -84.92 SS G_CDS: -6.46 Total: -91.38 kcal
Atomic # 8 Polarization: -6.32 SS G_CDS: -0.04 Total: -6.36 kcal
Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal
Atomic # 16 Polarization: -11.69 SS G_CDS: -1.13 Total: -12.82 kcal
Total: -58.76 0.89 -57.87 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259937015.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.412 kcal
(2) G-P(sol) polarization free energy of solvation -58.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.544 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds