Wall clock time and date at job start Mon Mar 30 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46845 * 2 1 4 4 H 1.08999 * 109.46681 * 305.56365 * 3 2 1 5 5 C 1.50705 * 109.46779 * 65.56162 * 3 2 1 6 6 H 1.07995 * 120.00090 * 28.12355 * 5 3 2 7 7 C 1.37877 * 119.99644 * 208.11502 * 5 3 2 8 8 N 1.31515 * 120.00348 * 6.12671 * 7 5 3 9 9 Si 1.86797 * 119.99807 * 186.12193 * 7 5 3 10 10 H 1.48497 * 109.47583 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46895 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47287 * 240.00060 * 9 7 5 13 13 C 1.52995 * 109.47391 * 185.56228 * 3 2 1 14 14 N 1.46499 * 109.46916 * 64.99945 * 13 3 2 15 15 C 1.34782 * 120.00091 * 179.72546 * 14 13 3 16 16 O 1.21273 * 119.99901 * 0.27639 * 15 14 13 17 17 C 1.50702 * 120.00113 * 180.27632 * 15 14 13 18 18 C 1.50693 * 109.46980 * 180.02562 * 17 15 14 19 19 C 1.33642 * 122.74963 * 124.72937 * 18 17 15 20 20 S 1.76195 * 107.92479 * 179.97438 * 19 18 17 21 21 C 1.70974 * 90.28266 * 0.27924 * 20 19 18 22 22 N 1.29026 * 110.16803 * 359.84011 * 21 20 19 23 23 H 1.08996 * 109.47463 * 294.04187 * 1 2 3 24 24 H 1.08995 * 109.47122 * 54.04867 * 1 2 3 25 25 H 1.09000 * 109.46442 * 174.04875 * 1 2 3 26 26 H 1.08995 * 109.47486 * 240.00310 * 2 1 3 27 27 H 1.09000 * 109.47226 * 119.99319 * 2 1 3 28 28 H 0.96998 * 120.00777 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46969 * 305.00451 * 13 3 2 30 30 H 1.08990 * 109.47272 * 184.99936 * 13 3 2 31 31 H 0.97002 * 120.00174 * 359.97438 * 14 13 3 32 32 H 1.09008 * 109.46724 * 300.00062 * 17 15 14 33 33 H 1.08995 * 109.46993 * 59.99330 * 17 15 14 34 34 H 1.07997 * 126.03941 * 0.04733 * 19 18 17 35 35 H 1.08001 * 124.91439 * 179.83761 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8360 5 6 1.6532 2.1121 1.2936 6 1 1.5265 1.5229 2.1898 7 6 1.4611 3.4768 1.3329 8 7 1.4966 4.1782 0.2210 9 14 1.1503 4.3296 2.9656 10 1 1.1593 3.3245 4.0587 11 1 2.2156 5.3350 3.2095 12 1 -0.1704 5.0073 2.9266 13 6 3.5635 1.4450 -0.1398 14 7 3.9346 0.9028 -1.4492 15 6 5.2334 0.8132 -1.7981 16 8 6.0951 1.1767 -1.0261 17 6 5.6148 0.2612 -3.1475 18 6 7.1152 0.2680 -3.2871 19 6 7.8188 -0.8291 -3.5828 20 16 9.5212 -0.3799 -3.6496 21 6 9.1185 1.2367 -3.2652 22 7 7.8417 1.3548 -3.1212 23 1 -0.3634 0.4186 0.9385 24 1 -0.3633 0.6033 -0.8319 25 1 -0.3632 -1.0222 -0.1066 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.3611 5.1383 0.2485 29 1 4.0014 0.8292 0.6457 30 1 3.9349 2.4658 -0.0508 31 1 3.2454 0.6116 -2.0666 32 1 5.2463 -0.7606 -3.2394 33 1 5.1738 0.8782 -3.9303 34 1 7.4151 -1.8163 -3.7522 35 1 9.8298 2.0422 -3.1583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259986569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:25 Heat of formation + Delta-G solvation = -9.109866 kcal Electronic energy + Delta-G solvation = -17798.879797 eV Core-core repulsion = 14923.274950 eV Total energy + Delta-G solvation = -2875.604848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09434 -38.54956 -35.78355 -33.04553 -32.10016 -31.71739 -28.83340 -27.55782 -25.10989 -24.39345 -22.48007 -20.35485 -19.50385 -19.39615 -18.08058 -16.81297 -16.13300 -15.88315 -14.96419 -14.76237 -14.52837 -14.20738 -13.48108 -13.39803 -13.25702 -12.90666 -12.85016 -12.29275 -12.22512 -11.78422 -11.42872 -11.02363 -10.98813 -10.86308 -10.40588 -10.18694 -9.76482 -9.59701 -9.53147 -9.36702 -9.16843 -9.01542 -8.76901 -8.47565 -8.12164 -6.07431 -4.09868 0.70432 1.36958 1.68036 2.82192 3.25020 3.29296 3.38540 3.41841 3.98797 4.20038 4.42844 4.89332 5.12310 5.20437 5.27192 5.42948 5.45039 5.69809 5.99942 6.07767 6.09009 6.28952 6.63536 6.67102 6.84626 6.95375 7.00513 7.17837 7.20344 7.54255 7.78924 7.79790 7.88870 8.25397 8.36490 8.90653 8.99971 9.55081 11.02080 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003902 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.347307 B = 7173.255626 C = 7821.000948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.028 3.972 4 H 0.059 0.941 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.131 3.869 14 N -0.722 5.722 15 C 0.507 3.493 16 O -0.535 6.535 17 C -0.072 4.072 18 C 0.093 3.907 19 C -0.256 4.256 20 S 0.094 5.906 21 C 0.028 3.972 22 N -0.439 5.439 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.177 0.823 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -10.243 -10.552 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.009 3.991 4 H 0.077 0.923 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.009 3.991 14 N -0.372 5.372 15 C 0.291 3.709 16 O -0.412 6.412 17 C -0.115 4.115 18 C -0.040 4.040 19 C -0.395 4.395 20 S 0.346 5.654 21 C -0.272 4.272 22 N -0.152 5.152 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.194 0.806 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.535 -9.756 -10.094 18.169 hybrid contribution -1.298 0.509 0.694 1.557 sum 10.237 -9.246 -9.400 16.693 Atomic orbital electron populations 1.21596 0.96781 0.98325 1.02398 1.21588 0.95458 0.99187 0.98620 1.19122 0.89093 0.91383 0.99509 0.92305 1.20986 1.46863 0.92055 0.94844 0.92455 1.25006 0.94645 0.97794 0.96207 1.69933 1.49367 1.07036 1.26100 0.86590 0.77731 0.79735 0.84312 1.19647 1.20913 1.21063 1.21965 0.99076 0.97663 0.80443 1.46408 1.06168 1.64298 1.20363 1.20164 0.83381 0.79400 0.88003 1.90693 1.49207 1.48523 1.52767 1.20315 0.89422 1.03736 0.98014 1.19733 0.96760 0.87387 1.00094 1.26758 0.95263 1.03978 1.13464 1.83869 1.08020 1.08003 1.65546 1.28421 0.95401 0.99764 1.03575 1.66039 1.04417 1.30901 1.13809 0.92146 0.93558 0.95421 0.95129 0.93739 0.92878 0.93751 0.91939 0.77421 0.87644 0.87375 0.80578 0.78561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.63 37.16 0.36 -2.12 16 2 C -0.11 -2.17 5.32 -26.72 -0.14 -2.31 16 3 C 0.03 0.65 1.87 -91.77 -0.17 0.48 16 4 H 0.06 1.50 7.43 -51.93 -0.39 1.12 16 5 C -0.51 -13.43 7.42 -34.44 -0.26 -13.68 16 6 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 7 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 8 N -0.89 -25.23 12.87 55.43 0.71 -24.51 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 3.00 5.05 -4.04 -0.02 2.98 16 14 N -0.72 -13.40 5.23 -60.30 -0.32 -13.72 16 15 C 0.51 9.42 7.80 -10.98 -0.09 9.34 16 16 O -0.54 -12.42 15.44 5.56 0.09 -12.33 16 17 C -0.07 -0.96 6.19 -29.04 -0.18 -1.14 16 18 C 0.09 1.33 5.64 -84.23 -0.47 0.85 16 19 C -0.26 -2.88 11.07 29.12 0.32 -2.56 16 20 S 0.09 0.93 23.22 -107.50 -2.50 -1.57 16 21 C 0.03 0.34 12.23 51.58 0.63 0.97 16 22 N -0.44 -7.05 9.68 -11.90 -0.12 -7.16 16 23 H 0.06 1.21 7.59 -51.93 -0.39 0.81 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.52 7.06 -51.93 -0.37 0.15 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.39 6.10 7.65 -40.82 -0.31 5.79 16 32 H 0.11 1.01 8.03 -51.92 -0.42 0.60 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -32.93 313.83 -7.34 -40.27 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.80 Total: 3.59 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.12 Total: -5.48 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.28 Total: -45.39 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.93 -7.34 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.162 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds