Wall clock time and date at job start Mon Mar 30 2020 05:18:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53008 * 109.46845 * 2 1
4 4 H 1.08999 * 109.46681 * 305.56365 * 3 2 1
5 5 C 1.50705 * 109.46779 * 65.56162 * 3 2 1
6 6 H 1.07995 * 120.00090 * 28.12355 * 5 3 2
7 7 C 1.37877 * 119.99644 * 208.11502 * 5 3 2
8 8 N 1.31515 * 120.00348 * 6.12671 * 7 5 3
9 9 Si 1.86797 * 119.99807 * 186.12193 * 7 5 3
10 10 H 1.48497 * 109.47583 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.46895 * 120.00237 * 9 7 5
12 12 H 1.48498 * 109.47287 * 240.00060 * 9 7 5
13 13 C 1.52995 * 109.47391 * 185.56228 * 3 2 1
14 14 N 1.46499 * 109.46916 * 64.99945 * 13 3 2
15 15 C 1.34782 * 120.00091 * 179.72546 * 14 13 3
16 16 O 1.21273 * 119.99901 * 0.27639 * 15 14 13
17 17 C 1.50702 * 120.00113 * 180.27632 * 15 14 13
18 18 C 1.50693 * 109.46980 * 180.02562 * 17 15 14
19 19 C 1.33642 * 122.74963 * 124.72937 * 18 17 15
20 20 S 1.76195 * 107.92479 * 179.97438 * 19 18 17
21 21 C 1.70974 * 90.28266 * 0.27924 * 20 19 18
22 22 N 1.29026 * 110.16803 * 359.84011 * 21 20 19
23 23 H 1.08996 * 109.47463 * 294.04187 * 1 2 3
24 24 H 1.08995 * 109.47122 * 54.04867 * 1 2 3
25 25 H 1.09000 * 109.46442 * 174.04875 * 1 2 3
26 26 H 1.08995 * 109.47486 * 240.00310 * 2 1 3
27 27 H 1.09000 * 109.47226 * 119.99319 * 2 1 3
28 28 H 0.96998 * 120.00777 * 179.97438 * 8 7 5
29 29 H 1.09000 * 109.46969 * 305.00451 * 13 3 2
30 30 H 1.08990 * 109.47272 * 184.99936 * 13 3 2
31 31 H 0.97002 * 120.00174 * 359.97438 * 14 13 3
32 32 H 1.09008 * 109.46724 * 300.00062 * 17 15 14
33 33 H 1.08995 * 109.46993 * 59.99330 * 17 15 14
34 34 H 1.07997 * 126.03941 * 0.04733 * 19 18 17
35 35 H 1.08001 * 124.91439 * 179.83761 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5975 1.9843 -0.8360
5 6 1.6532 2.1121 1.2936
6 1 1.5265 1.5229 2.1898
7 6 1.4611 3.4768 1.3329
8 7 1.4966 4.1782 0.2210
9 14 1.1503 4.3296 2.9656
10 1 1.1593 3.3245 4.0587
11 1 2.2156 5.3350 3.2095
12 1 -0.1704 5.0073 2.9266
13 6 3.5635 1.4450 -0.1398
14 7 3.9346 0.9028 -1.4492
15 6 5.2334 0.8132 -1.7981
16 8 6.0951 1.1767 -1.0261
17 6 5.6148 0.2612 -3.1475
18 6 7.1152 0.2680 -3.2871
19 6 7.8188 -0.8291 -3.5828
20 16 9.5212 -0.3799 -3.6496
21 6 9.1185 1.2367 -3.2652
22 7 7.8417 1.3548 -3.1212
23 1 -0.3634 0.4186 0.9385
24 1 -0.3633 0.6033 -0.8319
25 1 -0.3632 -1.0222 -0.1066
26 1 1.8934 -0.5137 -0.8899
27 1 1.8934 -0.5137 0.8900
28 1 1.3611 5.1383 0.2485
29 1 4.0014 0.8292 0.6457
30 1 3.9349 2.4658 -0.0508
31 1 3.2454 0.6116 -2.0666
32 1 5.2463 -0.7606 -3.2394
33 1 5.1738 0.8782 -3.9303
34 1 7.4151 -1.8163 -3.7522
35 1 9.8298 2.0422 -3.1583
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259986569.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:25
Heat of formation + Delta-G solvation = -9.109866 kcal
Electronic energy + Delta-G solvation = -17798.879797 eV
Core-core repulsion = 14923.274950 eV
Total energy + Delta-G solvation = -2875.604848 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.09434 -38.54956 -35.78355 -33.04553 -32.10016 -31.71739 -28.83340 -27.55782
-25.10989 -24.39345 -22.48007 -20.35485 -19.50385 -19.39615 -18.08058 -16.81297
-16.13300 -15.88315 -14.96419 -14.76237 -14.52837 -14.20738 -13.48108 -13.39803
-13.25702 -12.90666 -12.85016 -12.29275 -12.22512 -11.78422 -11.42872 -11.02363
-10.98813 -10.86308 -10.40588 -10.18694 -9.76482 -9.59701 -9.53147 -9.36702
-9.16843 -9.01542 -8.76901 -8.47565 -8.12164 -6.07431 -4.09868 0.70432
1.36958 1.68036 2.82192 3.25020 3.29296 3.38540 3.41841 3.98797
4.20038 4.42844 4.89332 5.12310 5.20437 5.27192 5.42948 5.45039
5.69809 5.99942 6.07767 6.09009 6.28952 6.63536 6.67102 6.84626
6.95375 7.00513 7.17837 7.20344 7.54255 7.78924 7.79790 7.88870
8.25397 8.36490 8.90653 8.99971 9.55081 11.02080
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.028968 B = 0.003902 C = 0.003579
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.347307 B = 7173.255626 C = 7821.000948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.111 4.111
3 C 0.028 3.972
4 H 0.059 0.941
5 C -0.509 4.509
6 H 0.057 0.943
7 C 0.066 3.934
8 N -0.887 5.887
9 Si 0.889 3.111
10 H -0.272 1.272
11 H -0.283 1.283
12 H -0.284 1.284
13 C 0.131 3.869
14 N -0.722 5.722
15 C 0.507 3.493
16 O -0.535 6.535
17 C -0.072 4.072
18 C 0.093 3.907
19 C -0.256 4.256
20 S 0.094 5.906
21 C 0.028 3.972
22 N -0.439 5.439
23 H 0.059 0.941
24 H 0.045 0.955
25 H 0.027 0.973
26 H 0.030 0.970
27 H 0.044 0.956
28 H 0.261 0.739
29 H 0.044 0.956
30 H 0.062 0.938
31 H 0.393 0.607
32 H 0.105 0.895
33 H 0.108 0.892
34 H 0.177 0.823
35 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.206 -10.243 -10.552 17.901
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.149 4.149
3 C 0.009 3.991
4 H 0.077 0.923
5 C -0.547 4.547
6 H 0.075 0.925
7 C -0.137 4.137
8 N -0.524 5.524
9 Si 0.716 3.284
10 H -0.196 1.196
11 H -0.209 1.209
12 H -0.211 1.211
13 C 0.009 3.991
14 N -0.372 5.372
15 C 0.291 3.709
16 O -0.412 6.412
17 C -0.115 4.115
18 C -0.040 4.040
19 C -0.395 4.395
20 S 0.346 5.654
21 C -0.272 4.272
22 N -0.152 5.152
23 H 0.079 0.921
24 H 0.064 0.936
25 H 0.046 0.954
26 H 0.049 0.951
27 H 0.063 0.937
28 H 0.071 0.929
29 H 0.062 0.938
30 H 0.081 0.919
31 H 0.226 0.774
32 H 0.124 0.876
33 H 0.126 0.874
34 H 0.194 0.806
35 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges 11.535 -9.756 -10.094 18.169
hybrid contribution -1.298 0.509 0.694 1.557
sum 10.237 -9.246 -9.400 16.693
Atomic orbital electron populations
1.21596 0.96781 0.98325 1.02398 1.21588 0.95458 0.99187 0.98620
1.19122 0.89093 0.91383 0.99509 0.92305 1.20986 1.46863 0.92055
0.94844 0.92455 1.25006 0.94645 0.97794 0.96207 1.69933 1.49367
1.07036 1.26100 0.86590 0.77731 0.79735 0.84312 1.19647 1.20913
1.21063 1.21965 0.99076 0.97663 0.80443 1.46408 1.06168 1.64298
1.20363 1.20164 0.83381 0.79400 0.88003 1.90693 1.49207 1.48523
1.52767 1.20315 0.89422 1.03736 0.98014 1.19733 0.96760 0.87387
1.00094 1.26758 0.95263 1.03978 1.13464 1.83869 1.08020 1.08003
1.65546 1.28421 0.95401 0.99764 1.03575 1.66039 1.04417 1.30901
1.13809 0.92146 0.93558 0.95421 0.95129 0.93739 0.92878 0.93751
0.91939 0.77421 0.87644 0.87375 0.80578 0.78561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.48 9.63 37.16 0.36 -2.12 16
2 C -0.11 -2.17 5.32 -26.72 -0.14 -2.31 16
3 C 0.03 0.65 1.87 -91.77 -0.17 0.48 16
4 H 0.06 1.50 7.43 -51.93 -0.39 1.12 16
5 C -0.51 -13.43 7.42 -34.44 -0.26 -13.68 16
6 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16
7 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16
8 N -0.89 -25.23 12.87 55.43 0.71 -24.51 16
9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16
10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
13 C 0.13 3.00 5.05 -4.04 -0.02 2.98 16
14 N -0.72 -13.40 5.23 -60.30 -0.32 -13.72 16
15 C 0.51 9.42 7.80 -10.98 -0.09 9.34 16
16 O -0.54 -12.42 15.44 5.56 0.09 -12.33 16
17 C -0.07 -0.96 6.19 -29.04 -0.18 -1.14 16
18 C 0.09 1.33 5.64 -84.23 -0.47 0.85 16
19 C -0.26 -2.88 11.07 29.12 0.32 -2.56 16
20 S 0.09 0.93 23.22 -107.50 -2.50 -1.57 16
21 C 0.03 0.34 12.23 51.58 0.63 0.97 16
22 N -0.44 -7.05 9.68 -11.90 -0.12 -7.16 16
23 H 0.06 1.21 7.59 -51.93 -0.39 0.81 16
24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.03 0.52 7.06 -51.93 -0.37 0.15 16
27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16
29 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16
30 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16
31 H 0.39 6.10 7.65 -40.82 -0.31 5.79 16
32 H 0.11 1.01 8.03 -51.92 -0.42 0.60 16
33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16
35 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16
LS Contribution 313.83 15.07 4.73 4.73
Total: -1.00 -32.93 313.83 -7.34 -40.27
By element:
Atomic # 1 Polarization: 8.40 SS G_CDS: -4.80 Total: 3.59 kcal
Atomic # 6 Polarization: -5.37 SS G_CDS: -0.12 Total: -5.48 kcal
Atomic # 7 Polarization: -45.68 SS G_CDS: 0.28 Total: -45.39 kcal
Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -32.93 -7.34 -40.27 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259986569.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.162 kcal
(2) G-P(sol) polarization free energy of solvation -32.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.110 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds