Wall clock time and date at job start Mon Mar 30 2020 05:18:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53008 * 109.46845 * 2 1
4 4 H 1.08999 * 109.46681 * 305.56365 * 3 2 1
5 5 C 1.50705 * 109.46779 * 65.56162 * 3 2 1
6 6 H 1.07995 * 120.00090 * 28.12355 * 5 3 2
7 7 C 1.37877 * 119.99644 * 208.11502 * 5 3 2
8 8 N 1.31515 * 120.00348 * 6.12671 * 7 5 3
9 9 Si 1.86797 * 119.99807 * 186.12193 * 7 5 3
10 10 H 1.48497 * 109.47583 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.46895 * 120.00237 * 9 7 5
12 12 H 1.48498 * 109.47287 * 240.00060 * 9 7 5
13 13 C 1.52995 * 109.47391 * 185.56228 * 3 2 1
14 14 N 1.46499 * 109.46916 * 64.99945 * 13 3 2
15 15 C 1.34782 * 120.00091 * 179.72546 * 14 13 3
16 16 O 1.21273 * 119.99901 * 0.27639 * 15 14 13
17 17 C 1.50702 * 120.00113 * 180.27632 * 15 14 13
18 18 C 1.50693 * 109.46980 * 180.02562 * 17 15 14
19 19 C 1.33642 * 122.74963 * 124.72937 * 18 17 15
20 20 S 1.76195 * 107.92479 * 179.97438 * 19 18 17
21 21 C 1.70974 * 90.28266 * 0.27924 * 20 19 18
22 22 N 1.29026 * 110.16803 * 359.84011 * 21 20 19
23 23 H 1.08996 * 109.47463 * 294.04187 * 1 2 3
24 24 H 1.08995 * 109.47122 * 54.04867 * 1 2 3
25 25 H 1.09000 * 109.46442 * 174.04875 * 1 2 3
26 26 H 1.08995 * 109.47486 * 240.00310 * 2 1 3
27 27 H 1.09000 * 109.47226 * 119.99319 * 2 1 3
28 28 H 0.96998 * 120.00777 * 179.97438 * 8 7 5
29 29 H 1.09000 * 109.46969 * 305.00451 * 13 3 2
30 30 H 1.08990 * 109.47272 * 184.99936 * 13 3 2
31 31 H 0.97002 * 120.00174 * 359.97438 * 14 13 3
32 32 H 1.09008 * 109.46724 * 300.00062 * 17 15 14
33 33 H 1.08995 * 109.46993 * 59.99330 * 17 15 14
34 34 H 1.07997 * 126.03941 * 0.04733 * 19 18 17
35 35 H 1.08001 * 124.91439 * 179.83761 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5975 1.9843 -0.8360
5 6 1.6532 2.1121 1.2936
6 1 1.5265 1.5229 2.1898
7 6 1.4611 3.4768 1.3329
8 7 1.4966 4.1782 0.2210
9 14 1.1503 4.3296 2.9656
10 1 1.1593 3.3245 4.0587
11 1 2.2156 5.3350 3.2095
12 1 -0.1704 5.0073 2.9266
13 6 3.5635 1.4450 -0.1398
14 7 3.9346 0.9028 -1.4492
15 6 5.2334 0.8132 -1.7981
16 8 6.0951 1.1767 -1.0261
17 6 5.6148 0.2612 -3.1475
18 6 7.1152 0.2680 -3.2871
19 6 7.8188 -0.8291 -3.5828
20 16 9.5212 -0.3799 -3.6496
21 6 9.1185 1.2367 -3.2652
22 7 7.8417 1.3548 -3.1212
23 1 -0.3634 0.4186 0.9385
24 1 -0.3633 0.6033 -0.8319
25 1 -0.3632 -1.0222 -0.1066
26 1 1.8934 -0.5137 -0.8899
27 1 1.8934 -0.5137 0.8900
28 1 1.3611 5.1383 0.2485
29 1 4.0014 0.8292 0.6457
30 1 3.9349 2.4658 -0.0508
31 1 3.2454 0.6116 -2.0666
32 1 5.2463 -0.7606 -3.2394
33 1 5.1738 0.8782 -3.9303
34 1 7.4151 -1.8163 -3.7522
35 1 9.8298 2.0422 -3.1583
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259986569.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:24
Heat of formation + Delta-G solvation = -32.159217 kcal
Electronic energy + Delta-G solvation = -17799.879292 eV
Core-core repulsion = 14923.274950 eV
Total energy + Delta-G solvation = -2876.604342 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.20352 -39.93407 -37.55214 -34.79416 -33.66964 -33.07103 -30.23126 -28.92682
-26.69933 -25.68986 -24.11314 -21.81693 -21.22815 -20.43403 -19.14797 -18.53237
-17.72864 -16.94468 -16.53810 -16.37119 -16.11666 -15.41886 -15.13819 -14.73215
-14.39226 -14.16255 -14.10988 -13.98707 -13.80682 -13.15599 -12.94739 -12.80516
-12.64071 -12.30739 -12.24544 -11.92231 -11.54199 -11.11051 -10.97715 -10.73682
-10.54741 -10.48905 -10.31604 -9.85084 -9.69931 -8.16721 -6.23547 -0.15799
0.56844 0.81722 1.37367 1.41719 1.51314 1.80599 1.82896 2.40024
2.59745 3.19429 3.33352 3.95428 4.13783 4.29175 4.37613 4.46244
4.52283 4.54846 4.65487 4.77220 4.82294 4.99294 5.14086 5.18477
5.25454 5.35080 5.55189 5.61416 5.64334 5.83887 5.93198 6.36008
6.76821 6.91804 6.94475 7.43425 7.47157 8.92638
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.028968 B = 0.003902 C = 0.003579
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.347307 B = 7173.255626 C = 7821.000948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.104 4.104
3 C 0.031 3.969
4 H 0.035 0.965
5 C -0.518 4.518
6 H 0.053 0.947
7 C 0.017 3.983
8 N -0.920 5.920
9 Si 0.944 3.056
10 H -0.264 1.264
11 H -0.288 1.288
12 H -0.277 1.277
13 C 0.150 3.850
14 N -0.714 5.714
15 C 0.502 3.498
16 O -0.586 6.586
17 C -0.060 4.060
18 C 0.053 3.947
19 C -0.249 4.249
20 S 0.160 5.840
21 C 0.004 3.996
22 N -0.497 5.497
23 H 0.038 0.962
24 H 0.040 0.960
25 H 0.062 0.938
26 H 0.062 0.938
27 H 0.042 0.958
28 H 0.260 0.740
29 H 0.033 0.967
30 H 0.012 0.988
31 H 0.410 0.590
32 H 0.150 0.850
33 H 0.123 0.877
34 H 0.210 0.790
35 H 0.215 0.785
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.492 -12.695 -11.588 20.138
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.142 4.142
3 C 0.012 3.988
4 H 0.053 0.947
5 C -0.557 4.557
6 H 0.072 0.928
7 C -0.183 4.183
8 N -0.559 5.559
9 Si 0.771 3.229
10 H -0.188 1.188
11 H -0.214 1.214
12 H -0.203 1.203
13 C 0.026 3.974
14 N -0.366 5.366
15 C 0.289 3.711
16 O -0.466 6.466
17 C -0.102 4.102
18 C -0.079 4.079
19 C -0.389 4.389
20 S 0.412 5.588
21 C -0.293 4.293
22 N -0.210 5.210
23 H 0.057 0.943
24 H 0.059 0.941
25 H 0.081 0.919
26 H 0.081 0.919
27 H 0.061 0.939
28 H 0.069 0.931
29 H 0.052 0.948
30 H 0.030 0.970
31 H 0.246 0.754
32 H 0.168 0.832
33 H 0.141 0.859
34 H 0.227 0.773
35 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges 11.808 -12.236 -11.157 20.338
hybrid contribution -1.271 1.201 0.981 2.005
sum 10.537 -11.035 -10.176 18.340
Atomic orbital electron populations
1.21543 0.95833 1.00286 1.01019 1.21495 0.96246 0.96395 1.00072
1.19027 0.88991 0.93592 0.97221 0.94717 1.21352 1.45964 0.92369
0.95974 0.92845 1.25709 0.94927 0.98657 0.98981 1.70038 1.50938
1.07074 1.27838 0.85707 0.77541 0.78671 0.81023 1.18845 1.21408
1.20317 1.21363 0.98591 0.94825 0.82602 1.46173 1.07251 1.64035
1.19111 1.21173 0.82282 0.78087 0.89605 1.90665 1.50504 1.50586
1.54884 1.20343 0.89692 1.06028 0.94097 1.19933 0.97230 0.88133
1.02587 1.27218 0.96110 1.04515 1.11019 1.83608 1.06416 1.05288
1.63501 1.28796 0.94996 1.02112 1.03436 1.66032 1.06243 1.32971
1.15792 0.94281 0.94088 0.91863 0.91902 0.93942 0.93068 0.94846
0.96952 0.75358 0.83235 0.85864 0.77343 0.76808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.57 9.63 71.98 0.69 -3.88 16
2 C -0.10 -3.92 5.32 30.60 0.16 -3.76 16
3 C 0.03 1.45 1.87 -11.54 -0.02 1.43 16
4 H 0.03 1.81 7.43 -2.39 -0.02 1.79 16
5 C -0.52 -27.84 7.42 25.60 0.19 -27.65 16
6 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16
7 C 0.02 0.92 5.45 84.65 0.46 1.38 16
8 N -0.92 -53.91 12.87 21.45 0.28 -53.63 16
9 Si 0.94 44.27 29.54 68.60 2.03 46.30 16
10 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16
11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
13 C 0.15 7.10 5.05 86.38 0.44 7.54 16
14 N -0.71 -26.32 5.23 -463.08 -2.42 -28.74 16
15 C 0.50 18.54 7.80 87.66 0.68 19.23 16
16 O -0.59 -27.97 15.44 -3.01 -0.05 -28.02 16
17 C -0.06 -1.46 6.19 29.10 0.18 -1.28 16
18 C 0.05 1.44 5.64 41.52 0.23 1.67 16
19 C -0.25 -4.86 11.07 66.78 0.74 -4.12 16
20 S 0.16 2.74 23.22 -56.49 -1.31 1.43 16
21 C 0.00 0.10 12.23 130.65 1.60 1.70 16
22 N -0.50 -15.87 9.68 -191.56 -1.85 -17.73 16
23 H 0.04 1.52 7.59 -2.39 -0.02 1.50 16
24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
26 H 0.06 1.95 7.06 -2.39 -0.02 1.93 16
27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16
29 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16
30 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.41 12.10 7.65 -92.71 -0.71 11.39 16
32 H 0.15 2.25 8.03 -2.38 -0.02 2.23 16
33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16
34 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16
35 H 0.22 3.74 8.06 -2.91 -0.02 3.72 16
Total: -1.00 -75.25 313.83 2.41 -72.84
By element:
Atomic # 1 Polarization: 14.90 SS G_CDS: 0.38 Total: 15.28 kcal
Atomic # 6 Polarization: -13.09 SS G_CDS: 5.36 Total: -7.73 kcal
Atomic # 7 Polarization: -96.10 SS G_CDS: -4.00 Total: -100.10 kcal
Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal
Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal
Total: -75.25 2.41 -72.84 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259986569.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.682 kcal
(2) G-P(sol) polarization free energy of solvation -75.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.159 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds