Wall clock time and date at job start Mon Mar 30 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46845 * 2 1 4 4 H 1.08999 * 109.46681 * 305.56365 * 3 2 1 5 5 C 1.50705 * 109.46779 * 65.56162 * 3 2 1 6 6 H 1.07995 * 120.00090 * 28.12355 * 5 3 2 7 7 C 1.37877 * 119.99644 * 208.11502 * 5 3 2 8 8 N 1.31515 * 120.00348 * 6.12671 * 7 5 3 9 9 Si 1.86797 * 119.99807 * 186.12193 * 7 5 3 10 10 H 1.48497 * 109.47583 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46895 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47287 * 240.00060 * 9 7 5 13 13 C 1.52995 * 109.47391 * 185.56228 * 3 2 1 14 14 N 1.46499 * 109.46916 * 64.99945 * 13 3 2 15 15 C 1.34782 * 120.00091 * 179.72546 * 14 13 3 16 16 O 1.21273 * 119.99901 * 0.27639 * 15 14 13 17 17 C 1.50702 * 120.00113 * 180.27632 * 15 14 13 18 18 C 1.50693 * 109.46980 * 180.02562 * 17 15 14 19 19 C 1.33642 * 122.74963 * 124.72937 * 18 17 15 20 20 S 1.76195 * 107.92479 * 179.97438 * 19 18 17 21 21 C 1.70974 * 90.28266 * 0.27924 * 20 19 18 22 22 N 1.29026 * 110.16803 * 359.84011 * 21 20 19 23 23 H 1.08996 * 109.47463 * 294.04187 * 1 2 3 24 24 H 1.08995 * 109.47122 * 54.04867 * 1 2 3 25 25 H 1.09000 * 109.46442 * 174.04875 * 1 2 3 26 26 H 1.08995 * 109.47486 * 240.00310 * 2 1 3 27 27 H 1.09000 * 109.47226 * 119.99319 * 2 1 3 28 28 H 0.96998 * 120.00777 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46969 * 305.00451 * 13 3 2 30 30 H 1.08990 * 109.47272 * 184.99936 * 13 3 2 31 31 H 0.97002 * 120.00174 * 359.97438 * 14 13 3 32 32 H 1.09008 * 109.46724 * 300.00062 * 17 15 14 33 33 H 1.08995 * 109.46993 * 59.99330 * 17 15 14 34 34 H 1.07997 * 126.03941 * 0.04733 * 19 18 17 35 35 H 1.08001 * 124.91439 * 179.83761 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8360 5 6 1.6532 2.1121 1.2936 6 1 1.5265 1.5229 2.1898 7 6 1.4611 3.4768 1.3329 8 7 1.4966 4.1782 0.2210 9 14 1.1503 4.3296 2.9656 10 1 1.1593 3.3245 4.0587 11 1 2.2156 5.3350 3.2095 12 1 -0.1704 5.0073 2.9266 13 6 3.5635 1.4450 -0.1398 14 7 3.9346 0.9028 -1.4492 15 6 5.2334 0.8132 -1.7981 16 8 6.0951 1.1767 -1.0261 17 6 5.6148 0.2612 -3.1475 18 6 7.1152 0.2680 -3.2871 19 6 7.8188 -0.8291 -3.5828 20 16 9.5212 -0.3799 -3.6496 21 6 9.1185 1.2367 -3.2652 22 7 7.8417 1.3548 -3.1212 23 1 -0.3634 0.4186 0.9385 24 1 -0.3633 0.6033 -0.8319 25 1 -0.3632 -1.0222 -0.1066 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.3611 5.1383 0.2485 29 1 4.0014 0.8292 0.6457 30 1 3.9349 2.4658 -0.0508 31 1 3.2454 0.6116 -2.0666 32 1 5.2463 -0.7606 -3.2394 33 1 5.1738 0.8782 -3.9303 34 1 7.4151 -1.8163 -3.7522 35 1 9.8298 2.0422 -3.1583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:24 Heat of formation + Delta-G solvation = -32.159217 kcal Electronic energy + Delta-G solvation = -17799.879292 eV Core-core repulsion = 14923.274950 eV Total energy + Delta-G solvation = -2876.604342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20352 -39.93407 -37.55214 -34.79416 -33.66964 -33.07103 -30.23126 -28.92682 -26.69933 -25.68986 -24.11314 -21.81693 -21.22815 -20.43403 -19.14797 -18.53237 -17.72864 -16.94468 -16.53810 -16.37119 -16.11666 -15.41886 -15.13819 -14.73215 -14.39226 -14.16255 -14.10988 -13.98707 -13.80682 -13.15599 -12.94739 -12.80516 -12.64071 -12.30739 -12.24544 -11.92231 -11.54199 -11.11051 -10.97715 -10.73682 -10.54741 -10.48905 -10.31604 -9.85084 -9.69931 -8.16721 -6.23547 -0.15799 0.56844 0.81722 1.37367 1.41719 1.51314 1.80599 1.82896 2.40024 2.59745 3.19429 3.33352 3.95428 4.13783 4.29175 4.37613 4.46244 4.52283 4.54846 4.65487 4.77220 4.82294 4.99294 5.14086 5.18477 5.25454 5.35080 5.55189 5.61416 5.64334 5.83887 5.93198 6.36008 6.76821 6.91804 6.94475 7.43425 7.47157 8.92638 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003902 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.347307 B = 7173.255626 C = 7821.000948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C 0.031 3.969 4 H 0.035 0.965 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.920 5.920 9 Si 0.944 3.056 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.150 3.850 14 N -0.714 5.714 15 C 0.502 3.498 16 O -0.586 6.586 17 C -0.060 4.060 18 C 0.053 3.947 19 C -0.249 4.249 20 S 0.160 5.840 21 C 0.004 3.996 22 N -0.497 5.497 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.260 0.740 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.410 0.590 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.210 0.790 35 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -12.695 -11.588 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.142 4.142 3 C 0.012 3.988 4 H 0.053 0.947 5 C -0.557 4.557 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.771 3.229 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.026 3.974 14 N -0.366 5.366 15 C 0.289 3.711 16 O -0.466 6.466 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.389 4.389 20 S 0.412 5.588 21 C -0.293 4.293 22 N -0.210 5.210 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.246 0.754 32 H 0.168 0.832 33 H 0.141 0.859 34 H 0.227 0.773 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 11.808 -12.236 -11.157 20.338 hybrid contribution -1.271 1.201 0.981 2.005 sum 10.537 -11.035 -10.176 18.340 Atomic orbital electron populations 1.21543 0.95833 1.00286 1.01019 1.21495 0.96246 0.96395 1.00072 1.19027 0.88991 0.93592 0.97221 0.94717 1.21352 1.45964 0.92369 0.95974 0.92845 1.25709 0.94927 0.98657 0.98981 1.70038 1.50938 1.07074 1.27838 0.85707 0.77541 0.78671 0.81023 1.18845 1.21408 1.20317 1.21363 0.98591 0.94825 0.82602 1.46173 1.07251 1.64035 1.19111 1.21173 0.82282 0.78087 0.89605 1.90665 1.50504 1.50586 1.54884 1.20343 0.89692 1.06028 0.94097 1.19933 0.97230 0.88133 1.02587 1.27218 0.96110 1.04515 1.11019 1.83608 1.06416 1.05288 1.63501 1.28796 0.94996 1.02112 1.03436 1.66032 1.06243 1.32971 1.15792 0.94281 0.94088 0.91863 0.91902 0.93942 0.93068 0.94846 0.96952 0.75358 0.83235 0.85864 0.77343 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 9.63 71.98 0.69 -3.88 16 2 C -0.10 -3.92 5.32 30.60 0.16 -3.76 16 3 C 0.03 1.45 1.87 -11.54 -0.02 1.43 16 4 H 0.03 1.81 7.43 -2.39 -0.02 1.79 16 5 C -0.52 -27.84 7.42 25.60 0.19 -27.65 16 6 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 7 C 0.02 0.92 5.45 84.65 0.46 1.38 16 8 N -0.92 -53.91 12.87 21.45 0.28 -53.63 16 9 Si 0.94 44.27 29.54 68.60 2.03 46.30 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.15 7.10 5.05 86.38 0.44 7.54 16 14 N -0.71 -26.32 5.23 -463.08 -2.42 -28.74 16 15 C 0.50 18.54 7.80 87.66 0.68 19.23 16 16 O -0.59 -27.97 15.44 -3.01 -0.05 -28.02 16 17 C -0.06 -1.46 6.19 29.10 0.18 -1.28 16 18 C 0.05 1.44 5.64 41.52 0.23 1.67 16 19 C -0.25 -4.86 11.07 66.78 0.74 -4.12 16 20 S 0.16 2.74 23.22 -56.49 -1.31 1.43 16 21 C 0.00 0.10 12.23 130.65 1.60 1.70 16 22 N -0.50 -15.87 9.68 -191.56 -1.85 -17.73 16 23 H 0.04 1.52 7.59 -2.39 -0.02 1.50 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.95 7.06 -2.39 -0.02 1.93 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.41 12.10 7.65 -92.71 -0.71 11.39 16 32 H 0.15 2.25 8.03 -2.38 -0.02 2.23 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.22 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.25 313.83 2.41 -72.84 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.38 Total: 15.28 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.36 Total: -7.73 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -4.00 Total: -100.10 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal Total: -75.25 2.41 -72.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.682 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds