Wall clock time and date at job start Mon Mar 30 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34480 * 126.16543 * 2 1 4 4 C 1.30259 * 108.69675 * 180.26659 * 3 2 1 5 5 O 1.33963 * 108.76358 * 359.75524 * 4 3 2 6 6 C 1.34331 * 126.16585 * 179.84724 * 2 1 3 7 7 C 1.50700 * 126.43777 * 0.02562 * 6 2 1 8 8 N 1.46906 * 109.47058 * 96.74372 * 7 6 2 9 9 C 1.46462 * 110.99742 * 303.46263 * 8 7 6 10 10 C 1.53253 * 109.85913 * 162.23074 * 9 8 7 11 11 S 1.81906 * 108.66711 * 61.90295 * 10 9 8 12 12 C 1.81990 * 101.87800 * 308.95795 * 11 10 9 13 13 C 1.46466 * 111.00077 * 177.47710 * 8 7 6 14 14 H 1.09005 * 109.40262 * 77.64919 * 13 8 7 15 15 C 1.50696 * 109.40747 * 317.80667 * 13 8 7 16 16 H 1.08004 * 120.00328 * 354.32724 * 15 13 8 17 17 C 1.37881 * 120.00055 * 174.32608 * 15 13 8 18 18 N 1.31519 * 119.99756 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00297 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46664 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46949 * 120.00090 * 19 17 15 22 22 H 1.48495 * 109.47038 * 239.99977 * 19 17 15 23 23 H 1.08998 * 109.47400 * 275.38856 * 1 2 3 24 24 H 1.09008 * 109.46541 * 35.38350 * 1 2 3 25 25 H 1.08992 * 109.46913 * 155.38309 * 1 2 3 26 26 H 1.08003 * 125.61626 * 179.73250 * 4 3 2 27 27 H 1.08993 * 109.47694 * 336.74442 * 7 6 2 28 28 H 1.09001 * 109.46692 * 216.73861 * 7 6 2 29 29 H 1.09003 * 109.40942 * 42.11362 * 9 8 7 30 30 H 1.08999 * 109.34240 * 282.31044 * 9 8 7 31 31 H 1.09000 * 109.63097 * 181.70133 * 10 9 8 32 32 H 1.08995 * 109.63159 * 302.10299 * 10 9 8 33 33 H 1.09003 * 109.45719 * 291.34483 * 12 11 10 34 34 H 1.09001 * 109.65542 * 170.84811 * 12 11 10 35 35 H 0.97005 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0057 5 8 3.5734 -0.6446 -0.0041 6 6 2.2997 -1.0845 0.0029 7 6 1.8492 -2.5225 0.0062 8 7 1.8585 -3.0417 -1.3680 9 6 1.0216 -2.2199 -2.2452 10 6 1.3815 -2.4894 -3.7103 11 16 1.0429 -4.2379 -4.0809 12 6 1.9160 -5.0837 -2.7266 13 6 1.4826 -4.4570 -1.3970 14 1 0.4016 -4.5469 -1.2896 15 6 2.1603 -5.1785 -0.2607 16 1 2.8763 -4.6586 0.3586 17 6 1.8664 -6.5024 -0.0117 18 7 0.9942 -7.1354 -0.7655 19 14 2.7071 -7.3969 1.3964 20 1 3.6378 -6.4685 2.0871 21 1 1.6834 -7.8778 2.3587 22 1 3.4678 -8.5553 0.8629 23 1 -0.3634 0.0965 1.0231 24 1 -0.3633 0.8379 -0.5951 25 1 -0.3633 -0.9342 -0.4280 26 1 4.4066 1.3434 -0.0113 27 1 0.8395 -2.5861 0.4117 28 1 2.5263 -3.1139 0.6226 29 1 1.1861 -1.1662 -2.0198 30 1 -0.0270 -2.4665 -2.0786 31 1 0.7778 -1.8542 -4.3585 32 1 2.4386 -2.2788 -3.8724 33 1 2.9915 -4.9615 -2.8556 34 1 1.6617 -6.1437 -2.7320 35 1 0.7877 -8.0669 -0.5905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259994467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:51 Heat of formation + Delta-G solvation = 32.057095 kcal Electronic energy + Delta-G solvation = -19032.155276 eV Core-core repulsion = 16158.335561 eV Total energy + Delta-G solvation = -2873.819714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.12759 -37.79738 -34.93710 -33.37635 -32.04235 -30.57998 -29.43754 -27.19495 -25.54253 -24.48542 -22.60547 -21.69480 -20.52588 -19.69140 -17.07842 -16.81847 -16.39131 -15.70760 -15.07318 -14.82103 -14.63609 -14.04438 -13.69671 -13.43783 -13.21601 -12.88977 -12.74073 -12.33965 -12.10508 -11.79388 -11.68248 -11.48480 -11.16045 -10.96786 -10.82171 -10.61089 -10.44643 -10.35346 -10.12185 -9.49520 -8.80522 -8.62890 -8.38601 -7.54002 -6.92357 -6.26989 -4.35687 1.69323 2.63425 2.81884 3.04344 3.16356 3.26147 3.28750 3.47955 4.21758 4.30218 4.63160 5.03350 5.03899 5.10747 5.40885 5.56538 5.63820 5.69168 5.70827 5.81869 5.88902 6.03454 6.08159 6.22347 6.31721 6.39137 6.49830 6.53316 6.64499 7.00700 7.32323 7.48731 7.65388 7.90179 7.94183 8.23020 8.71721 9.31962 10.79423 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.007750 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.380801 B = 3611.889761 C = 4753.322932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.031 4.031 3 N -0.487 5.487 4 C 0.152 3.848 5 O -0.192 6.192 6 C -0.011 4.011 7 C 0.145 3.855 8 N -0.545 5.545 9 C 0.050 3.950 10 C -0.064 4.064 11 S -0.337 6.337 12 C -0.032 4.032 13 C 0.223 3.777 14 H 0.025 0.975 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.244 0.756 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 10.654 0.571 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.152 4.152 3 N -0.217 5.217 4 C -0.075 4.075 5 O -0.077 6.077 6 C -0.065 4.065 7 C 0.018 3.982 8 N -0.271 5.271 9 C -0.080 4.080 10 C -0.212 4.212 11 S -0.110 6.110 12 C -0.180 4.180 13 C 0.115 3.885 14 H 0.042 0.958 15 C -0.563 4.563 16 H 0.090 0.910 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.726 3.274 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.921 10.634 -0.528 10.687 hybrid contribution 0.735 -0.637 1.814 2.058 sum 1.657 9.997 1.285 10.215 Atomic orbital electron populations 1.20161 0.86849 1.03178 1.02706 1.21462 0.97803 0.87729 1.08179 1.70270 1.01450 1.31924 1.18084 1.27849 0.97360 0.79897 1.02364 1.84482 1.30479 1.23968 1.68798 1.23724 0.80349 0.98360 1.04083 1.20522 1.00749 0.84174 0.92795 1.61221 1.54589 1.04851 1.06429 1.22292 0.95589 0.97954 0.92157 1.23267 1.04143 0.95257 0.98567 1.86594 1.74463 1.05183 1.44744 1.23936 0.99363 1.03277 0.91440 1.19362 0.95787 0.80572 0.92746 0.95786 1.21248 1.25468 0.96228 1.13317 0.91005 1.24993 0.94723 0.97426 0.96596 1.69904 1.32367 1.11283 1.38388 0.86414 0.79403 0.79763 0.81801 1.19527 1.20825 1.20737 0.91032 0.90905 0.90641 0.74021 0.91700 0.86828 0.90953 0.94123 0.89074 0.90266 0.91590 0.85736 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 9.63 36.01 0.35 -0.58 16 2 C -0.03 -0.49 5.94 -82.81 -0.49 -0.98 16 3 N -0.49 -7.49 11.29 -11.17 -0.13 -7.62 16 4 C 0.15 2.01 13.23 52.10 0.69 2.70 16 5 O -0.19 -3.13 10.77 5.38 0.06 -3.07 16 6 C -0.01 -0.18 5.79 -35.69 -0.21 -0.39 16 7 C 0.14 2.66 4.77 -4.97 -0.02 2.64 16 8 N -0.54 -10.92 4.37 -229.87 -1.00 -11.92 16 9 C 0.05 0.89 4.29 -3.93 -0.02 0.87 16 10 C -0.06 -1.11 6.68 37.29 0.25 -0.86 16 11 S -0.34 -6.93 22.42 -107.50 -2.41 -9.34 16 12 C -0.03 -0.74 5.80 37.28 0.22 -0.52 16 13 C 0.22 5.16 1.79 -68.98 -0.12 5.03 16 14 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 15 C -0.52 -12.89 7.72 -34.44 -0.27 -13.16 16 16 H 0.07 1.75 5.67 -52.48 -0.30 1.45 16 17 C 0.07 1.69 5.32 -17.82 -0.09 1.59 16 18 N -0.88 -23.36 11.71 55.43 0.65 -22.71 16 19 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.07 0.99 6.00 -51.93 -0.31 0.67 16 26 H 0.24 1.88 8.06 -52.48 -0.42 1.45 16 27 H 0.07 1.15 7.36 -51.93 -0.38 0.77 16 28 H 0.11 2.24 5.58 -51.93 -0.29 1.95 16 29 H 0.07 1.21 4.91 -51.93 -0.25 0.95 16 30 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.12 3.17 6.48 -51.93 -0.34 2.83 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -27.83 291.04 -7.54 -35.38 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.35 Total: 3.84 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 0.28 Total: -3.67 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.48 Total: -42.25 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.06 Total: -3.07 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -2.41 Total: -9.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.83 -7.54 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.432 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds