Wall clock time and date at job start Mon Mar 30 2020 05:00:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.34480 * 126.16543 * 2 1
4 4 C 1.30259 * 108.69675 * 180.26659 * 3 2 1
5 5 O 1.33963 * 108.76358 * 359.75524 * 4 3 2
6 6 C 1.34331 * 126.16585 * 179.84724 * 2 1 3
7 7 C 1.50700 * 126.43777 * 0.02562 * 6 2 1
8 8 N 1.46906 * 109.47058 * 96.74372 * 7 6 2
9 9 C 1.46462 * 110.99742 * 303.46263 * 8 7 6
10 10 C 1.53253 * 109.85913 * 162.23074 * 9 8 7
11 11 S 1.81906 * 108.66711 * 61.90295 * 10 9 8
12 12 C 1.81990 * 101.87800 * 308.95795 * 11 10 9
13 13 C 1.46466 * 111.00077 * 177.47710 * 8 7 6
14 14 H 1.09005 * 109.40262 * 77.64919 * 13 8 7
15 15 C 1.50696 * 109.40747 * 317.80667 * 13 8 7
16 16 H 1.08004 * 120.00328 * 354.32724 * 15 13 8
17 17 C 1.37881 * 120.00055 * 174.32608 * 15 13 8
18 18 N 1.31519 * 119.99756 * 359.97438 * 17 15 13
19 19 Si 1.86803 * 120.00297 * 179.97438 * 17 15 13
20 20 H 1.48502 * 109.46664 * 0.02562 * 19 17 15
21 21 H 1.48495 * 109.46949 * 120.00090 * 19 17 15
22 22 H 1.48495 * 109.47038 * 239.99977 * 19 17 15
23 23 H 1.08998 * 109.47400 * 275.38856 * 1 2 3
24 24 H 1.09008 * 109.46541 * 35.38350 * 1 2 3
25 25 H 1.08992 * 109.46913 * 155.38309 * 1 2 3
26 26 H 1.08003 * 125.61626 * 179.73250 * 4 3 2
27 27 H 1.08993 * 109.47694 * 336.74442 * 7 6 2
28 28 H 1.09001 * 109.46692 * 216.73861 * 7 6 2
29 29 H 1.09003 * 109.40942 * 42.11362 * 9 8 7
30 30 H 1.08999 * 109.34240 * 282.31044 * 9 8 7
31 31 H 1.09000 * 109.63097 * 181.70133 * 10 9 8
32 32 H 1.08995 * 109.63159 * 302.10299 * 10 9 8
33 33 H 1.09003 * 109.45719 * 291.34483 * 12 11 10
34 34 H 1.09001 * 109.65542 * 170.84811 * 12 11 10
35 35 H 0.97005 * 119.99979 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 -0.0057
5 8 3.5734 -0.6446 -0.0041
6 6 2.2997 -1.0845 0.0029
7 6 1.8492 -2.5225 0.0062
8 7 1.8585 -3.0417 -1.3680
9 6 1.0216 -2.2199 -2.2452
10 6 1.3815 -2.4894 -3.7103
11 16 1.0429 -4.2379 -4.0809
12 6 1.9160 -5.0837 -2.7266
13 6 1.4826 -4.4570 -1.3970
14 1 0.4016 -4.5469 -1.2896
15 6 2.1603 -5.1785 -0.2607
16 1 2.8763 -4.6586 0.3586
17 6 1.8664 -6.5024 -0.0117
18 7 0.9942 -7.1354 -0.7655
19 14 2.7071 -7.3969 1.3964
20 1 3.6378 -6.4685 2.0871
21 1 1.6834 -7.8778 2.3587
22 1 3.4678 -8.5553 0.8629
23 1 -0.3634 0.0965 1.0231
24 1 -0.3633 0.8379 -0.5951
25 1 -0.3633 -0.9342 -0.4280
26 1 4.4066 1.3434 -0.0113
27 1 0.8395 -2.5861 0.4117
28 1 2.5263 -3.1139 0.6226
29 1 1.1861 -1.1662 -2.0198
30 1 -0.0270 -2.4665 -2.0786
31 1 0.7778 -1.8542 -4.3585
32 1 2.4386 -2.2788 -3.8724
33 1 2.9915 -4.9615 -2.8556
34 1 1.6617 -6.1437 -2.7320
35 1 0.7877 -8.0669 -0.5905
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259994467.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:51
Heat of formation + Delta-G solvation = 32.057095 kcal
Electronic energy + Delta-G solvation = -19032.155276 eV
Core-core repulsion = 16158.335561 eV
Total energy + Delta-G solvation = -2873.819714 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-43.12759 -37.79738 -34.93710 -33.37635 -32.04235 -30.57998 -29.43754 -27.19495
-25.54253 -24.48542 -22.60547 -21.69480 -20.52588 -19.69140 -17.07842 -16.81847
-16.39131 -15.70760 -15.07318 -14.82103 -14.63609 -14.04438 -13.69671 -13.43783
-13.21601 -12.88977 -12.74073 -12.33965 -12.10508 -11.79388 -11.68248 -11.48480
-11.16045 -10.96786 -10.82171 -10.61089 -10.44643 -10.35346 -10.12185 -9.49520
-8.80522 -8.62890 -8.38601 -7.54002 -6.92357 -6.26989 -4.35687 1.69323
2.63425 2.81884 3.04344 3.16356 3.26147 3.28750 3.47955 4.21758
4.30218 4.63160 5.03350 5.03899 5.10747 5.40885 5.56538 5.63820
5.69168 5.70827 5.81869 5.88902 6.03454 6.08159 6.22347 6.31721
6.39137 6.49830 6.53316 6.64499 7.00700 7.32323 7.48731 7.65388
7.90179 7.94183 8.23020 8.71721 9.31962 10.79423
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.016551 B = 0.007750 C = 0.005889
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.380801 B = 3611.889761 C = 4753.322932
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C -0.031 4.031
3 N -0.487 5.487
4 C 0.152 3.848
5 O -0.192 6.192
6 C -0.011 4.011
7 C 0.145 3.855
8 N -0.545 5.545
9 C 0.050 3.950
10 C -0.064 4.064
11 S -0.337 6.337
12 C -0.032 4.032
13 C 0.223 3.777
14 H 0.025 0.975
15 C -0.523 4.523
16 H 0.072 0.928
17 C 0.067 3.933
18 N -0.882 5.882
19 Si 0.899 3.101
20 H -0.271 1.271
21 H -0.282 1.282
22 H -0.281 1.281
23 H 0.071 0.929
24 H 0.072 0.928
25 H 0.075 0.925
26 H 0.244 0.756
27 H 0.065 0.935
28 H 0.114 0.886
29 H 0.072 0.928
30 H 0.041 0.959
31 H 0.091 0.909
32 H 0.079 0.921
33 H 0.065 0.935
34 H 0.125 0.875
35 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.300 10.654 0.571 10.748
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.152 4.152
3 N -0.217 5.217
4 C -0.075 4.075
5 O -0.077 6.077
6 C -0.065 4.065
7 C 0.018 3.982
8 N -0.271 5.271
9 C -0.080 4.080
10 C -0.212 4.212
11 S -0.110 6.110
12 C -0.180 4.180
13 C 0.115 3.885
14 H 0.042 0.958
15 C -0.563 4.563
16 H 0.090 0.910
17 C -0.137 4.137
18 N -0.519 5.519
19 Si 0.726 3.274
20 H -0.195 1.195
21 H -0.208 1.208
22 H -0.207 1.207
23 H 0.090 0.910
24 H 0.091 0.909
25 H 0.094 0.906
26 H 0.260 0.740
27 H 0.083 0.917
28 H 0.132 0.868
29 H 0.090 0.910
30 H 0.059 0.941
31 H 0.109 0.891
32 H 0.097 0.903
33 H 0.084 0.916
34 H 0.143 0.857
35 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 0.921 10.634 -0.528 10.687
hybrid contribution 0.735 -0.637 1.814 2.058
sum 1.657 9.997 1.285 10.215
Atomic orbital electron populations
1.20161 0.86849 1.03178 1.02706 1.21462 0.97803 0.87729 1.08179
1.70270 1.01450 1.31924 1.18084 1.27849 0.97360 0.79897 1.02364
1.84482 1.30479 1.23968 1.68798 1.23724 0.80349 0.98360 1.04083
1.20522 1.00749 0.84174 0.92795 1.61221 1.54589 1.04851 1.06429
1.22292 0.95589 0.97954 0.92157 1.23267 1.04143 0.95257 0.98567
1.86594 1.74463 1.05183 1.44744 1.23936 0.99363 1.03277 0.91440
1.19362 0.95787 0.80572 0.92746 0.95786 1.21248 1.25468 0.96228
1.13317 0.91005 1.24993 0.94723 0.97426 0.96596 1.69904 1.32367
1.11283 1.38388 0.86414 0.79403 0.79763 0.81801 1.19527 1.20825
1.20737 0.91032 0.90905 0.90641 0.74021 0.91700 0.86828 0.90953
0.94123 0.89074 0.90266 0.91590 0.85736 0.92394
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.93 9.63 36.01 0.35 -0.58 16
2 C -0.03 -0.49 5.94 -82.81 -0.49 -0.98 16
3 N -0.49 -7.49 11.29 -11.17 -0.13 -7.62 16
4 C 0.15 2.01 13.23 52.10 0.69 2.70 16
5 O -0.19 -3.13 10.77 5.38 0.06 -3.07 16
6 C -0.01 -0.18 5.79 -35.69 -0.21 -0.39 16
7 C 0.14 2.66 4.77 -4.97 -0.02 2.64 16
8 N -0.54 -10.92 4.37 -229.87 -1.00 -11.92 16
9 C 0.05 0.89 4.29 -3.93 -0.02 0.87 16
10 C -0.06 -1.11 6.68 37.29 0.25 -0.86 16
11 S -0.34 -6.93 22.42 -107.50 -2.41 -9.34 16
12 C -0.03 -0.74 5.80 37.28 0.22 -0.52 16
13 C 0.22 5.16 1.79 -68.98 -0.12 5.03 16
14 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16
15 C -0.52 -12.89 7.72 -34.44 -0.27 -13.16 16
16 H 0.07 1.75 5.67 -52.48 -0.30 1.45 16
17 C 0.07 1.69 5.32 -17.82 -0.09 1.59 16
18 N -0.88 -23.36 11.71 55.43 0.65 -22.71 16
19 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16
20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16
22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16
25 H 0.07 0.99 6.00 -51.93 -0.31 0.67 16
26 H 0.24 1.88 8.06 -52.48 -0.42 1.45 16
27 H 0.07 1.15 7.36 -51.93 -0.38 0.77 16
28 H 0.11 2.24 5.58 -51.93 -0.29 1.95 16
29 H 0.07 1.21 4.91 -51.93 -0.25 0.95 16
30 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16
31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16
33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16
34 H 0.12 3.17 6.48 -51.93 -0.34 2.83 16
35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16
LS Contribution 291.04 15.07 4.39 4.39
Total: -1.00 -27.83 291.04 -7.54 -35.38
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: -4.35 Total: 3.84 kcal
Atomic # 6 Polarization: -3.95 SS G_CDS: 0.28 Total: -3.67 kcal
Atomic # 7 Polarization: -41.77 SS G_CDS: -0.48 Total: -42.25 kcal
Atomic # 8 Polarization: -3.13 SS G_CDS: 0.06 Total: -3.07 kcal
Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal
Atomic # 16 Polarization: -6.93 SS G_CDS: -2.41 Total: -9.34 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -27.83 -7.54 -35.38 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259994467.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.432 kcal
(2) G-P(sol) polarization free energy of solvation -27.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds