Wall clock time and date at job start Mon Mar 30 2020 05:00:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.34480 * 126.16543 * 2 1
4 4 C 1.30259 * 108.69675 * 180.26659 * 3 2 1
5 5 O 1.33963 * 108.76358 * 359.75524 * 4 3 2
6 6 C 1.34331 * 126.16585 * 179.84724 * 2 1 3
7 7 C 1.50700 * 126.43777 * 0.02562 * 6 2 1
8 8 N 1.46906 * 109.47058 * 96.74372 * 7 6 2
9 9 C 1.46462 * 110.99742 * 303.46263 * 8 7 6
10 10 C 1.53253 * 109.85913 * 162.23074 * 9 8 7
11 11 S 1.81906 * 108.66711 * 61.90295 * 10 9 8
12 12 C 1.81990 * 101.87800 * 308.95795 * 11 10 9
13 13 C 1.46466 * 111.00077 * 177.47710 * 8 7 6
14 14 H 1.09005 * 109.40262 * 77.64919 * 13 8 7
15 15 C 1.50696 * 109.40747 * 317.80667 * 13 8 7
16 16 H 1.08004 * 120.00328 * 354.32724 * 15 13 8
17 17 C 1.37881 * 120.00055 * 174.32608 * 15 13 8
18 18 N 1.31519 * 119.99756 * 359.97438 * 17 15 13
19 19 Si 1.86803 * 120.00297 * 179.97438 * 17 15 13
20 20 H 1.48502 * 109.46664 * 0.02562 * 19 17 15
21 21 H 1.48495 * 109.46949 * 120.00090 * 19 17 15
22 22 H 1.48495 * 109.47038 * 239.99977 * 19 17 15
23 23 H 1.08998 * 109.47400 * 275.38856 * 1 2 3
24 24 H 1.09008 * 109.46541 * 35.38350 * 1 2 3
25 25 H 1.08992 * 109.46913 * 155.38309 * 1 2 3
26 26 H 1.08003 * 125.61626 * 179.73250 * 4 3 2
27 27 H 1.08993 * 109.47694 * 336.74442 * 7 6 2
28 28 H 1.09001 * 109.46692 * 216.73861 * 7 6 2
29 29 H 1.09003 * 109.40942 * 42.11362 * 9 8 7
30 30 H 1.08999 * 109.34240 * 282.31044 * 9 8 7
31 31 H 1.09000 * 109.63097 * 181.70133 * 10 9 8
32 32 H 1.08995 * 109.63159 * 302.10299 * 10 9 8
33 33 H 1.09003 * 109.45719 * 291.34483 * 12 11 10
34 34 H 1.09001 * 109.65542 * 170.84811 * 12 11 10
35 35 H 0.97005 * 119.99979 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 -0.0057
5 8 3.5734 -0.6446 -0.0041
6 6 2.2997 -1.0845 0.0029
7 6 1.8492 -2.5225 0.0062
8 7 1.8585 -3.0417 -1.3680
9 6 1.0216 -2.2199 -2.2452
10 6 1.3815 -2.4894 -3.7103
11 16 1.0429 -4.2379 -4.0809
12 6 1.9160 -5.0837 -2.7266
13 6 1.4826 -4.4570 -1.3970
14 1 0.4016 -4.5469 -1.2896
15 6 2.1603 -5.1785 -0.2607
16 1 2.8763 -4.6586 0.3586
17 6 1.8664 -6.5024 -0.0117
18 7 0.9942 -7.1354 -0.7655
19 14 2.7071 -7.3969 1.3964
20 1 3.6378 -6.4685 2.0871
21 1 1.6834 -7.8778 2.3587
22 1 3.4678 -8.5553 0.8629
23 1 -0.3634 0.0965 1.0231
24 1 -0.3633 0.8379 -0.5951
25 1 -0.3633 -0.9342 -0.4280
26 1 4.4066 1.3434 -0.0113
27 1 0.8395 -2.5861 0.4117
28 1 2.5263 -3.1139 0.6226
29 1 1.1861 -1.1662 -2.0198
30 1 -0.0270 -2.4665 -2.0786
31 1 0.7778 -1.8542 -4.3585
32 1 2.4386 -2.2788 -3.8724
33 1 2.9915 -4.9615 -2.8556
34 1 1.6617 -6.1437 -2.7320
35 1 0.7877 -8.0669 -0.5905
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259994467.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:50
Heat of formation + Delta-G solvation = 12.505403 kcal
Electronic energy + Delta-G solvation = -19033.003101 eV
Core-core repulsion = 16158.335561 eV
Total energy + Delta-G solvation = -2874.667539 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-44.29557 -39.39566 -36.12531 -35.16854 -33.38409 -32.19576 -30.91846 -28.47119
-27.41811 -25.85042 -24.10356 -22.99350 -21.87306 -21.25202 -18.77199 -18.03134
-17.79804 -17.28364 -16.76489 -16.24519 -15.97653 -15.68186 -15.18142 -14.91738
-14.55048 -14.37161 -14.04631 -13.86798 -13.48605 -13.19499 -13.15861 -12.94006
-12.87120 -12.73077 -12.34867 -12.18678 -12.05872 -11.94092 -11.50784 -11.13113
-10.68751 -10.40041 -9.62760 -9.16283 -8.60093 -8.20309 -6.34831 0.51456
1.03288 1.40814 1.44962 1.54814 1.69258 1.77016 1.91453 2.38429
3.06642 3.15138 3.34118 3.83515 3.89778 3.99402 4.20413 4.24220
4.36556 4.54390 4.56035 4.64280 4.70452 4.72293 4.77373 4.82290
4.90053 5.05072 5.14406 5.23431 5.46447 5.47879 5.61382 5.87876
6.13436 6.50066 6.77319 6.79623 7.36215 8.85679
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.016551 B = 0.007750 C = 0.005889
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1691.380801 B = 3611.889761 C = 4753.322932
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.022 4.022
3 N -0.513 5.513
4 C 0.177 3.823
5 O -0.210 6.210
6 C -0.041 4.041
7 C 0.153 3.847
8 N -0.550 5.550
9 C 0.055 3.945
10 C -0.054 4.054
11 S -0.344 6.344
12 C -0.028 4.028
13 C 0.234 3.766
14 H -0.011 1.011
15 C -0.530 4.530
16 H 0.073 0.927
17 C 0.023 3.977
18 N -0.913 5.913
19 Si 0.959 3.041
20 H -0.264 1.264
21 H -0.281 1.281
22 H -0.282 1.282
23 H 0.084 0.916
24 H 0.085 0.915
25 H 0.071 0.929
26 H 0.294 0.706
27 H 0.065 0.935
28 H 0.094 0.906
29 H 0.090 0.910
30 H 0.036 0.964
31 H 0.124 0.876
32 H 0.082 0.918
33 H 0.058 0.942
34 H 0.096 0.904
35 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.978 12.828 0.789 13.003
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.142 4.142
3 N -0.243 5.243
4 C -0.049 4.049
5 O -0.096 6.096
6 C -0.095 4.095
7 C 0.026 3.974
8 N -0.276 5.276
9 C -0.074 4.074
10 C -0.203 4.203
11 S -0.117 6.117
12 C -0.176 4.176
13 C 0.126 3.874
14 H 0.007 0.993
15 C -0.570 4.570
16 H 0.090 0.910
17 C -0.178 4.178
18 N -0.551 5.551
19 Si 0.784 3.216
20 H -0.189 1.189
21 H -0.207 1.207
22 H -0.208 1.208
23 H 0.103 0.897
24 H 0.104 0.896
25 H 0.089 0.911
26 H 0.309 0.691
27 H 0.083 0.917
28 H 0.112 0.888
29 H 0.108 0.892
30 H 0.054 0.946
31 H 0.142 0.858
32 H 0.101 0.899
33 H 0.076 0.924
34 H 0.114 0.886
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 1.590 12.828 -0.307 12.930
hybrid contribution 0.554 -1.151 1.725 2.146
sum 2.144 11.677 1.418 11.956
Atomic orbital electron populations
1.20249 0.85448 1.03493 1.03799 1.21787 0.98785 0.87407 1.06188
1.70343 1.02320 1.31775 1.19832 1.29072 0.98317 0.79092 0.98427
1.84471 1.30267 1.25496 1.69360 1.23276 0.81052 0.97574 1.07586
1.20265 1.00352 0.85342 0.91460 1.61181 1.54941 1.03551 1.07930
1.22289 0.94900 0.98381 0.91848 1.23406 1.05074 0.92858 0.98923
1.86538 1.74149 1.07814 1.43236 1.23591 0.99010 1.02202 0.92838
1.19037 0.93363 0.82612 0.92427 0.99329 1.21521 1.25210 0.96492
1.13763 0.90955 1.25701 0.95268 0.98204 0.98658 1.70025 1.33745
1.11448 1.39868 0.85487 0.78446 0.78507 0.79151 1.18855 1.20653
1.20811 0.89744 0.89580 0.91056 0.69124 0.91720 0.88824 0.89157
0.94615 0.85793 0.89886 0.92363 0.88611 0.92502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.74 9.63 71.24 0.69 -1.06 16
2 C -0.02 -0.64 5.94 41.26 0.25 -0.39 16
3 N -0.51 -14.25 11.29 -304.06 -3.43 -17.68 16
4 C 0.18 4.07 13.23 130.48 1.73 5.80 16
5 O -0.21 -6.40 10.77 -3.67 -0.04 -6.44 16
6 C -0.04 -1.34 5.79 24.79 0.14 -1.19 16
7 C 0.15 5.64 4.77 85.56 0.41 6.05 16
8 N -0.55 -22.06 4.37 -881.18 -3.85 -25.91 16
9 C 0.06 1.89 4.29 86.47 0.37 2.26 16
10 C -0.05 -1.79 6.68 72.07 0.48 -1.31 16
11 S -0.34 -14.07 22.42 -56.49 -1.27 -15.34 16
12 C -0.03 -1.31 5.80 72.06 0.42 -0.90 16
13 C 0.23 11.13 1.79 44.33 0.08 11.21 16
14 H -0.01 -0.58 7.91 -2.38 -0.02 -0.60 16
15 C -0.53 -26.78 7.72 25.60 0.20 -26.58 16
16 H 0.07 3.59 5.67 -2.91 -0.02 3.57 16
17 C 0.02 1.18 5.32 84.65 0.45 1.63 16
18 N -0.91 -49.81 11.71 21.45 0.25 -49.56 16
19 Si 0.96 41.05 29.54 68.60 2.03 43.08 16
20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16
21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
24 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16
25 H 0.07 1.76 6.00 -2.39 -0.01 1.75 16
26 H 0.29 3.07 8.06 -2.91 -0.02 3.05 16
27 H 0.06 2.34 7.36 -2.39 -0.02 2.32 16
28 H 0.09 3.78 5.58 -2.39 -0.01 3.76 16
29 H 0.09 2.82 4.91 -2.39 -0.01 2.81 16
30 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16
31 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16
32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16
33 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16
34 H 0.10 5.09 6.48 -2.39 -0.02 5.08 16
35 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16
Total: -1.00 -60.67 291.04 -0.01 -60.67
By element:
Atomic # 1 Polarization: 14.57 SS G_CDS: 1.10 Total: 15.67 kcal
Atomic # 6 Polarization: -9.70 SS G_CDS: 5.21 Total: -4.49 kcal
Atomic # 7 Polarization: -86.12 SS G_CDS: -7.04 Total: -93.16 kcal
Atomic # 8 Polarization: -6.40 SS G_CDS: -0.04 Total: -6.44 kcal
Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal
Atomic # 16 Polarization: -14.07 SS G_CDS: -1.27 Total: -15.34 kcal
Total: -60.67 -0.01 -60.67 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259994467.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal
(2) G-P(sol) polarization free energy of solvation -60.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.511 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds