Wall clock time and date at job start Mon Mar 30 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34480 * 126.16543 * 2 1 4 4 C 1.30259 * 108.69675 * 180.26659 * 3 2 1 5 5 O 1.33963 * 108.76358 * 359.75524 * 4 3 2 6 6 C 1.34331 * 126.16585 * 179.84724 * 2 1 3 7 7 C 1.50700 * 126.43777 * 0.02562 * 6 2 1 8 8 N 1.46906 * 109.47058 * 96.74372 * 7 6 2 9 9 C 1.46462 * 110.99742 * 303.46263 * 8 7 6 10 10 C 1.53253 * 109.85913 * 162.23074 * 9 8 7 11 11 S 1.81906 * 108.66711 * 61.90295 * 10 9 8 12 12 C 1.81990 * 101.87800 * 308.95795 * 11 10 9 13 13 C 1.46466 * 111.00077 * 177.47710 * 8 7 6 14 14 H 1.09005 * 109.40262 * 77.64919 * 13 8 7 15 15 C 1.50696 * 109.40747 * 317.80667 * 13 8 7 16 16 H 1.08004 * 120.00328 * 354.32724 * 15 13 8 17 17 C 1.37881 * 120.00055 * 174.32608 * 15 13 8 18 18 N 1.31519 * 119.99756 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00297 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46664 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46949 * 120.00090 * 19 17 15 22 22 H 1.48495 * 109.47038 * 239.99977 * 19 17 15 23 23 H 1.08998 * 109.47400 * 275.38856 * 1 2 3 24 24 H 1.09008 * 109.46541 * 35.38350 * 1 2 3 25 25 H 1.08992 * 109.46913 * 155.38309 * 1 2 3 26 26 H 1.08003 * 125.61626 * 179.73250 * 4 3 2 27 27 H 1.08993 * 109.47694 * 336.74442 * 7 6 2 28 28 H 1.09001 * 109.46692 * 216.73861 * 7 6 2 29 29 H 1.09003 * 109.40942 * 42.11362 * 9 8 7 30 30 H 1.08999 * 109.34240 * 282.31044 * 9 8 7 31 31 H 1.09000 * 109.63097 * 181.70133 * 10 9 8 32 32 H 1.08995 * 109.63159 * 302.10299 * 10 9 8 33 33 H 1.09003 * 109.45719 * 291.34483 * 12 11 10 34 34 H 1.09001 * 109.65542 * 170.84811 * 12 11 10 35 35 H 0.97005 * 119.99979 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0057 5 8 3.5734 -0.6446 -0.0041 6 6 2.2997 -1.0845 0.0029 7 6 1.8492 -2.5225 0.0062 8 7 1.8585 -3.0417 -1.3680 9 6 1.0216 -2.2199 -2.2452 10 6 1.3815 -2.4894 -3.7103 11 16 1.0429 -4.2379 -4.0809 12 6 1.9160 -5.0837 -2.7266 13 6 1.4826 -4.4570 -1.3970 14 1 0.4016 -4.5469 -1.2896 15 6 2.1603 -5.1785 -0.2607 16 1 2.8763 -4.6586 0.3586 17 6 1.8664 -6.5024 -0.0117 18 7 0.9942 -7.1354 -0.7655 19 14 2.7071 -7.3969 1.3964 20 1 3.6378 -6.4685 2.0871 21 1 1.6834 -7.8778 2.3587 22 1 3.4678 -8.5553 0.8629 23 1 -0.3634 0.0965 1.0231 24 1 -0.3633 0.8379 -0.5951 25 1 -0.3633 -0.9342 -0.4280 26 1 4.4066 1.3434 -0.0113 27 1 0.8395 -2.5861 0.4117 28 1 2.5263 -3.1139 0.6226 29 1 1.1861 -1.1662 -2.0198 30 1 -0.0270 -2.4665 -2.0786 31 1 0.7778 -1.8542 -4.3585 32 1 2.4386 -2.2788 -3.8724 33 1 2.9915 -4.9615 -2.8556 34 1 1.6617 -6.1437 -2.7320 35 1 0.7877 -8.0669 -0.5905 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259994467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:50 Heat of formation + Delta-G solvation = 12.505403 kcal Electronic energy + Delta-G solvation = -19033.003101 eV Core-core repulsion = 16158.335561 eV Total energy + Delta-G solvation = -2874.667539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.29557 -39.39566 -36.12531 -35.16854 -33.38409 -32.19576 -30.91846 -28.47119 -27.41811 -25.85042 -24.10356 -22.99350 -21.87306 -21.25202 -18.77199 -18.03134 -17.79804 -17.28364 -16.76489 -16.24519 -15.97653 -15.68186 -15.18142 -14.91738 -14.55048 -14.37161 -14.04631 -13.86798 -13.48605 -13.19499 -13.15861 -12.94006 -12.87120 -12.73077 -12.34867 -12.18678 -12.05872 -11.94092 -11.50784 -11.13113 -10.68751 -10.40041 -9.62760 -9.16283 -8.60093 -8.20309 -6.34831 0.51456 1.03288 1.40814 1.44962 1.54814 1.69258 1.77016 1.91453 2.38429 3.06642 3.15138 3.34118 3.83515 3.89778 3.99402 4.20413 4.24220 4.36556 4.54390 4.56035 4.64280 4.70452 4.72293 4.77373 4.82290 4.90053 5.05072 5.14406 5.23431 5.46447 5.47879 5.61382 5.87876 6.13436 6.50066 6.77319 6.79623 7.36215 8.85679 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.007750 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.380801 B = 3611.889761 C = 4753.322932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 N -0.513 5.513 4 C 0.177 3.823 5 O -0.210 6.210 6 C -0.041 4.041 7 C 0.153 3.847 8 N -0.550 5.550 9 C 0.055 3.945 10 C -0.054 4.054 11 S -0.344 6.344 12 C -0.028 4.028 13 C 0.234 3.766 14 H -0.011 1.011 15 C -0.530 4.530 16 H 0.073 0.927 17 C 0.023 3.977 18 N -0.913 5.913 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.282 1.282 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.294 0.706 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 12.828 0.789 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.142 4.142 3 N -0.243 5.243 4 C -0.049 4.049 5 O -0.096 6.096 6 C -0.095 4.095 7 C 0.026 3.974 8 N -0.276 5.276 9 C -0.074 4.074 10 C -0.203 4.203 11 S -0.117 6.117 12 C -0.176 4.176 13 C 0.126 3.874 14 H 0.007 0.993 15 C -0.570 4.570 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.551 5.551 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.208 1.208 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.309 0.691 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.590 12.828 -0.307 12.930 hybrid contribution 0.554 -1.151 1.725 2.146 sum 2.144 11.677 1.418 11.956 Atomic orbital electron populations 1.20249 0.85448 1.03493 1.03799 1.21787 0.98785 0.87407 1.06188 1.70343 1.02320 1.31775 1.19832 1.29072 0.98317 0.79092 0.98427 1.84471 1.30267 1.25496 1.69360 1.23276 0.81052 0.97574 1.07586 1.20265 1.00352 0.85342 0.91460 1.61181 1.54941 1.03551 1.07930 1.22289 0.94900 0.98381 0.91848 1.23406 1.05074 0.92858 0.98923 1.86538 1.74149 1.07814 1.43236 1.23591 0.99010 1.02202 0.92838 1.19037 0.93363 0.82612 0.92427 0.99329 1.21521 1.25210 0.96492 1.13763 0.90955 1.25701 0.95268 0.98204 0.98658 1.70025 1.33745 1.11448 1.39868 0.85487 0.78446 0.78507 0.79151 1.18855 1.20653 1.20811 0.89744 0.89580 0.91056 0.69124 0.91720 0.88824 0.89157 0.94615 0.85793 0.89886 0.92363 0.88611 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 9.63 71.24 0.69 -1.06 16 2 C -0.02 -0.64 5.94 41.26 0.25 -0.39 16 3 N -0.51 -14.25 11.29 -304.06 -3.43 -17.68 16 4 C 0.18 4.07 13.23 130.48 1.73 5.80 16 5 O -0.21 -6.40 10.77 -3.67 -0.04 -6.44 16 6 C -0.04 -1.34 5.79 24.79 0.14 -1.19 16 7 C 0.15 5.64 4.77 85.56 0.41 6.05 16 8 N -0.55 -22.06 4.37 -881.18 -3.85 -25.91 16 9 C 0.06 1.89 4.29 86.47 0.37 2.26 16 10 C -0.05 -1.79 6.68 72.07 0.48 -1.31 16 11 S -0.34 -14.07 22.42 -56.49 -1.27 -15.34 16 12 C -0.03 -1.31 5.80 72.06 0.42 -0.90 16 13 C 0.23 11.13 1.79 44.33 0.08 11.21 16 14 H -0.01 -0.58 7.91 -2.38 -0.02 -0.60 16 15 C -0.53 -26.78 7.72 25.60 0.20 -26.58 16 16 H 0.07 3.59 5.67 -2.91 -0.02 3.57 16 17 C 0.02 1.18 5.32 84.65 0.45 1.63 16 18 N -0.91 -49.81 11.71 21.45 0.25 -49.56 16 19 Si 0.96 41.05 29.54 68.60 2.03 43.08 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.07 1.76 6.00 -2.39 -0.01 1.75 16 26 H 0.29 3.07 8.06 -2.91 -0.02 3.05 16 27 H 0.06 2.34 7.36 -2.39 -0.02 2.32 16 28 H 0.09 3.78 5.58 -2.39 -0.01 3.76 16 29 H 0.09 2.82 4.91 -2.39 -0.01 2.81 16 30 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 31 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.10 5.09 6.48 -2.39 -0.02 5.08 16 35 H 0.27 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -60.67 291.04 -0.01 -60.67 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.10 Total: 15.67 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.21 Total: -4.49 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -7.04 Total: -93.16 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.04 Total: -6.44 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: -14.07 SS G_CDS: -1.27 Total: -15.34 kcal Total: -60.67 -0.01 -60.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259994467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal (2) G-P(sol) polarization free energy of solvation -60.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds