Wall clock time and date at job start Mon Mar 30 2020 04:47:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86796 * 120.00282 * 2 1
4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1
5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1
6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1
7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3
8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1
10 10 H 1.09000 * 109.50765 * 300.08052 * 9 7 2
11 11 C 1.53094 * 109.50977 * 60.21794 * 9 7 2
12 12 O 1.43012 * 109.26041 * 176.78116 * 11 9 7
13 13 C 1.43013 * 113.73746 * 301.32640 * 12 11 9
14 14 C 1.53098 * 109.25760 * 58.67474 * 13 12 11
15 15 N 1.47015 * 109.50302 * 180.02562 * 9 7 2
16 16 C 1.46894 * 111.00255 * 57.67168 * 15 9 7
17 17 C 1.53000 * 109.47419 * 189.99822 * 16 15 9
18 18 C 1.50701 * 109.47323 * 180.02562 * 17 16 15
19 19 C 1.33641 * 122.74719 * 125.00728 * 18 17 16
20 20 S 1.76196 * 107.92070 * 180.02562 * 19 18 17
21 21 C 1.70970 * 90.28439 * 359.97438 * 20 19 18
22 22 N 1.29026 * 110.16926 * 359.74092 * 21 20 19
23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3
24 24 H 1.09001 * 109.50426 * 296.72053 * 11 9 7
25 25 H 1.08998 * 109.50459 * 56.84603 * 11 9 7
26 26 H 1.08998 * 109.51321 * 298.73772 * 13 12 11
27 27 H 1.09006 * 109.50578 * 178.60420 * 13 12 11
28 28 H 1.09004 * 109.50649 * 183.21358 * 14 13 12
29 29 H 1.09004 * 109.50907 * 63.08129 * 14 13 12
30 30 H 1.09001 * 109.47683 * 310.00140 * 16 15 9
31 31 H 1.09004 * 109.47013 * 70.00038 * 16 15 9
32 32 H 1.08997 * 109.47392 * 300.00179 * 17 16 15
33 33 H 1.09001 * 109.47258 * 59.99784 * 17 16 15
34 34 H 1.08003 * 126.03946 * 359.97438 * 19 18 17
35 35 H 1.08000 * 124.91594 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4400 -0.7000
6 1 1.4467 2.6526 -0.7001
7 6 2.0045 -1.1941 -0.0057
8 1 3.0845 -1.1941 -0.0053
9 6 1.2509 -2.4991 -0.0125
10 1 0.6226 -2.5612 0.8761
11 6 0.3750 -2.5772 -1.2657
12 8 -0.2798 -3.8480 -1.3051
13 6 0.6202 -4.9594 -1.3119
14 6 1.4986 -4.9056 -0.0591
15 7 2.2055 -3.6172 -0.0170
16 6 3.1042 -3.5469 1.1428
17 6 4.2317 -4.5677 0.9770
18 6 5.1533 -4.4960 2.1672
19 6 5.4505 -5.5619 2.9167
20 16 6.5497 -5.0393 4.1908
21 6 6.5010 -3.4399 3.5886
22 7 5.7368 -3.3784 2.5507
23 1 -0.4850 0.8401 0.0040
24 1 -0.3717 -1.7837 -1.2378
25 1 0.9977 -2.4609 -2.1527
26 1 1.2500 -4.9124 -2.2003
27 1 0.0507 -5.8889 -1.3174
28 1 2.2244 -5.7183 -0.0883
29 1 0.8736 -5.0065 0.8282
30 1 3.5284 -2.5453 1.2137
31 1 2.5436 -3.7690 2.0508
32 1 3.8076 -5.5693 0.9063
33 1 4.7924 -4.3457 0.0690
34 1 5.0813 -6.5659 2.7682
35 1 7.0357 -2.6031 4.0130
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260075179.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:47:45
Heat of formation + Delta-G solvation = 8.455073 kcal
Electronic energy + Delta-G solvation = -18515.488980 eV
Core-core repulsion = 15640.645806 eV
Total energy + Delta-G solvation = -2874.843175 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.83734 -38.50951 -35.25985 -33.19177 -31.84355 -29.83112 -28.95927 -26.10938
-25.12706 -24.59849 -22.26496 -21.57125 -19.45670 -19.19690 -17.79500 -16.61272
-15.93616 -15.29808 -15.14929 -14.68441 -14.37262 -14.08437 -13.85829 -13.57091
-13.26478 -13.19115 -12.72351 -12.55260 -11.98233 -11.56691 -11.19377 -11.01451
-10.87447 -10.71859 -10.55196 -10.31774 -10.00557 -9.65471 -9.48878 -9.42708
-9.08279 -8.77281 -8.63639 -8.34003 -7.27649 -6.08779 -4.12119 0.74644
1.40854 1.72778 2.89791 3.30310 3.36693 3.41955 4.28470 4.37817
4.76257 4.94170 5.18117 5.22430 5.25744 5.37363 5.66680 5.71744
5.85009 5.87122 5.96342 5.99923 6.19524 6.35722 6.42481 6.59128
6.69719 6.79533 7.00328 7.32247 7.54651 7.72913 7.81806 7.91133
8.19229 8.22041 8.55557 8.95263 9.53060 10.99440
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.016535 B = 0.006086 C = 0.004589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.001328 B = 4599.509482 C = 6100.169057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.060 3.940
3 Si 0.900 3.100
4 H -0.281 1.281
5 H -0.272 1.272
6 H -0.286 1.286
7 C -0.506 4.506
8 H 0.069 0.931
9 C 0.189 3.811
10 H 0.007 0.993
11 C 0.069 3.931
12 O -0.405 6.405
13 C 0.068 3.932
14 C 0.016 3.984
15 N -0.533 5.533
16 C 0.073 3.927
17 C -0.045 4.045
18 C 0.083 3.917
19 C -0.260 4.260
20 S 0.087 5.913
21 C 0.028 3.972
22 N -0.455 5.455
23 H 0.264 0.736
24 H 0.123 0.877
25 H 0.034 0.966
26 H 0.047 0.953
27 H 0.078 0.922
28 H 0.067 0.933
29 H 0.028 0.972
30 H 0.100 0.900
31 H 0.017 0.983
32 H 0.072 0.928
33 H 0.088 0.912
34 H 0.175 0.825
35 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.209 -10.906 5.569 15.943
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.142 4.142
3 Si 0.728 3.272
4 H -0.207 1.207
5 H -0.197 1.197
6 H -0.212 1.212
7 C -0.544 4.544
8 H 0.087 0.913
9 C 0.083 3.917
10 H 0.025 0.975
11 C -0.007 4.007
12 O -0.324 6.324
13 C -0.010 4.010
14 C -0.113 4.113
15 N -0.259 5.259
16 C -0.056 4.056
17 C -0.085 4.085
18 C -0.049 4.049
19 C -0.399 4.399
20 S 0.338 5.662
21 C -0.271 4.271
22 N -0.168 5.168
23 H 0.074 0.926
24 H 0.140 0.860
25 H 0.052 0.948
26 H 0.065 0.935
27 H 0.096 0.904
28 H 0.086 0.914
29 H 0.046 0.954
30 H 0.118 0.882
31 H 0.035 0.965
32 H 0.090 0.910
33 H 0.106 0.894
34 H 0.192 0.808
35 H 0.215 0.785
Dipole moment (debyes) X Y Z Total
from point charges 10.585 -10.689 5.700 16.087
hybrid contribution -0.245 0.809 0.227 0.875
sum 10.340 -9.880 5.927 15.481
Atomic orbital electron populations
1.69852 1.05924 1.26960 1.50620 1.24980 0.94937 0.99399 0.94875
0.86452 0.79845 0.82803 0.78139 1.20692 1.19656 1.21170 1.21091
0.93538 0.89193 1.50626 0.91296 1.19823 0.89464 0.88140 0.94269
0.97515 1.23135 0.97511 0.82738 0.97291 1.87905 1.33873 1.15604
1.95003 1.22425 0.92009 0.90197 0.96390 1.22760 0.96546 0.93965
0.98051 1.62266 1.20965 1.02024 1.40633 1.21887 0.92406 1.00399
0.90866 1.20326 0.94636 1.00443 0.93109 1.20531 0.98616 0.86652
0.99102 1.26816 1.07392 1.04634 1.01020 1.83878 1.44045 1.06873
1.31408 1.28473 1.01797 1.00409 0.96464 1.66157 1.08424 1.29298
1.12962 0.92639 0.85959 0.94762 0.93512 0.90415 0.91426 0.95378
0.88208 0.96480 0.90958 0.89405 0.80759 0.78525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.45 11.37 55.43 0.63 -24.82 16
2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16
3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
7 C -0.51 -13.88 7.80 -34.44 -0.27 -14.15 16
8 H 0.07 1.90 6.58 -52.49 -0.35 1.56 16
9 C 0.19 4.90 1.97 -68.75 -0.14 4.76 16
10 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16
11 C 0.07 1.75 6.02 37.21 0.22 1.98 16
12 O -0.40 -9.39 10.83 -35.23 -0.38 -9.77 16
13 C 0.07 1.26 7.01 37.21 0.26 1.52 16
14 C 0.02 0.29 5.44 -3.71 -0.02 0.27 16
15 N -0.53 -11.65 4.53 -227.72 -1.03 -12.68 16
16 C 0.07 1.47 4.66 -3.83 -0.02 1.45 16
17 C -0.04 -0.71 5.64 -27.88 -0.16 -0.87 16
18 C 0.08 1.25 6.07 -84.22 -0.51 0.74 16
19 C -0.26 -3.16 11.07 29.12 0.32 -2.83 16
20 S 0.09 0.89 23.22 -107.50 -2.50 -1.61 16
21 C 0.03 0.33 12.23 51.58 0.63 0.96 16
22 N -0.46 -7.27 10.35 -11.90 -0.12 -7.39 16
23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
24 H 0.12 3.37 6.19 -51.93 -0.32 3.05 16
25 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16
28 H 0.07 1.04 6.39 -51.93 -0.33 0.71 16
29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.10 2.29 5.99 -51.93 -0.31 1.98 16
31 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16
32 H 0.07 0.99 6.40 -51.93 -0.33 0.66 16
33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16
34 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16
35 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16
LS Contribution 297.32 15.07 4.48 4.48
Total: -1.00 -30.51 297.32 -8.29 -38.80
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: -4.58 Total: 1.20 kcal
Atomic # 6 Polarization: -4.86 SS G_CDS: 0.23 Total: -4.62 kcal
Atomic # 7 Polarization: -44.36 SS G_CDS: -0.52 Total: -44.89 kcal
Atomic # 8 Polarization: -9.39 SS G_CDS: -0.38 Total: -9.77 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.61 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -30.51 -8.29 -38.80 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260075179.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.256 kcal
(2) G-P(sol) polarization free energy of solvation -30.511 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.745 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.455 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds