Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50765 * 300.08052 * 9 7 2 11 11 C 1.53094 * 109.50977 * 60.21794 * 9 7 2 12 12 O 1.43012 * 109.26041 * 176.78116 * 11 9 7 13 13 C 1.43013 * 113.73746 * 301.32640 * 12 11 9 14 14 C 1.53098 * 109.25760 * 58.67474 * 13 12 11 15 15 N 1.47015 * 109.50302 * 180.02562 * 9 7 2 16 16 C 1.46894 * 111.00255 * 57.67168 * 15 9 7 17 17 C 1.53000 * 109.47419 * 189.99822 * 16 15 9 18 18 C 1.50701 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.33641 * 122.74719 * 125.00728 * 18 17 16 20 20 S 1.76196 * 107.92070 * 180.02562 * 19 18 17 21 21 C 1.70970 * 90.28439 * 359.97438 * 20 19 18 22 22 N 1.29026 * 110.16926 * 359.74092 * 21 20 19 23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 24 24 H 1.09001 * 109.50426 * 296.72053 * 11 9 7 25 25 H 1.08998 * 109.50459 * 56.84603 * 11 9 7 26 26 H 1.08998 * 109.51321 * 298.73772 * 13 12 11 27 27 H 1.09006 * 109.50578 * 178.60420 * 13 12 11 28 28 H 1.09004 * 109.50649 * 183.21358 * 14 13 12 29 29 H 1.09004 * 109.50907 * 63.08129 * 14 13 12 30 30 H 1.09001 * 109.47683 * 310.00140 * 16 15 9 31 31 H 1.09004 * 109.47013 * 70.00038 * 16 15 9 32 32 H 1.08997 * 109.47392 * 300.00179 * 17 16 15 33 33 H 1.09001 * 109.47258 * 59.99784 * 17 16 15 34 34 H 1.08003 * 126.03946 * 359.97438 * 19 18 17 35 35 H 1.08000 * 124.91594 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6226 -2.5612 0.8761 11 6 0.3750 -2.5772 -1.2657 12 8 -0.2798 -3.8480 -1.3051 13 6 0.6202 -4.9594 -1.3119 14 6 1.4986 -4.9056 -0.0591 15 7 2.2055 -3.6172 -0.0170 16 6 3.1042 -3.5469 1.1428 17 6 4.2317 -4.5677 0.9770 18 6 5.1533 -4.4960 2.1672 19 6 5.4505 -5.5619 2.9167 20 16 6.5497 -5.0393 4.1908 21 6 6.5010 -3.4399 3.5886 22 7 5.7368 -3.3784 2.5507 23 1 -0.4850 0.8401 0.0040 24 1 -0.3717 -1.7837 -1.2378 25 1 0.9977 -2.4609 -2.1527 26 1 1.2500 -4.9124 -2.2003 27 1 0.0507 -5.8889 -1.3174 28 1 2.2244 -5.7183 -0.0883 29 1 0.8736 -5.0065 0.8282 30 1 3.5284 -2.5453 1.2137 31 1 2.5436 -3.7690 2.0508 32 1 3.8076 -5.5693 0.9063 33 1 4.7924 -4.3457 0.0690 34 1 5.0813 -6.5659 2.7682 35 1 7.0357 -2.6031 4.0130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -13.794199 kcal Electronic energy + Delta-G solvation = -18516.453781 eV Core-core repulsion = 15640.645806 eV Total energy + Delta-G solvation = -2875.807976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92490 -40.20872 -36.95659 -35.18866 -33.17179 -31.67056 -30.24759 -27.75031 -26.96942 -25.73823 -24.03435 -23.13523 -21.00867 -20.46944 -18.80487 -18.62955 -17.46148 -16.89934 -16.63233 -16.35813 -15.90362 -15.56714 -15.45041 -15.28057 -14.74994 -14.28133 -14.14907 -14.02858 -13.68029 -13.06955 -12.90961 -12.66499 -12.49754 -12.46561 -12.25295 -12.04595 -11.88773 -11.26447 -11.01967 -10.70747 -10.51889 -10.37990 -10.27502 -9.68755 -9.09010 -8.20760 -6.31742 -0.17098 0.54787 0.80706 1.39393 1.40108 1.52111 1.86164 2.37803 3.04407 3.08896 3.32839 3.41353 4.04095 4.15441 4.19567 4.36877 4.41501 4.43893 4.45010 4.55473 4.59352 4.71684 4.79946 4.91029 4.95671 5.08340 5.20916 5.23038 5.38983 5.52264 5.63434 5.97370 6.21936 6.45467 6.63950 6.81929 6.87988 7.37288 8.87054 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.006086 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.001328 B = 4599.509482 C = 6100.169057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.197 3.803 10 H -0.039 1.039 11 C 0.084 3.916 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.015 3.985 15 N -0.538 5.538 16 C 0.083 3.917 17 C -0.030 4.030 18 C 0.048 3.952 19 C -0.256 4.256 20 S 0.161 5.839 21 C 0.012 3.988 22 N -0.508 5.508 23 H 0.266 0.734 24 H 0.094 0.906 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.002 0.998 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.202 0.798 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -12.766 6.139 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.089 3.911 10 H -0.022 1.022 11 C 0.008 3.992 12 O -0.340 6.340 13 C -0.018 4.018 14 C -0.113 4.113 15 N -0.263 5.263 16 C -0.046 4.046 17 C -0.070 4.070 18 C -0.084 4.084 19 C -0.396 4.396 20 S 0.413 5.587 21 C -0.286 4.286 22 N -0.223 5.223 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.219 0.781 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.265 -12.574 6.279 18.653 hybrid contribution -0.716 1.259 0.156 1.457 sum 11.549 -11.315 6.434 17.401 Atomic orbital electron populations 1.69980 1.07199 1.27809 1.51060 1.25761 0.95734 1.02624 0.94392 0.85476 0.78687 0.78837 0.78209 1.20330 1.19271 1.20258 1.21285 0.93254 0.90478 1.50854 0.92146 1.19559 0.89569 0.89465 0.92491 1.02163 1.22698 0.96343 0.83534 0.96664 1.87857 1.35259 1.15795 1.95082 1.22825 0.92310 0.89954 0.96668 1.22916 0.97363 0.93344 0.97703 1.62258 1.20335 1.02382 1.41351 1.21741 0.93094 1.00121 0.89643 1.20115 0.93140 1.00006 0.93726 1.20411 1.00188 0.87705 1.00067 1.27191 1.06659 1.05082 1.00619 1.83618 1.41810 1.04249 1.29005 1.28916 1.01147 1.02704 0.95826 1.66126 1.10291 1.30761 1.15129 0.92468 0.88835 0.95138 0.92485 0.86242 0.87111 0.96384 0.91850 0.97956 0.88260 0.90310 0.78135 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 11.37 21.45 0.24 -53.96 16 2 C 0.01 0.80 5.30 84.66 0.45 1.24 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.52 -29.73 7.80 25.60 0.20 -29.53 16 8 H 0.06 3.49 6.58 -2.91 -0.02 3.47 16 9 C 0.20 10.60 1.97 44.18 0.09 10.68 16 10 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 11 C 0.08 4.42 6.02 72.01 0.43 4.85 16 12 O -0.42 -19.54 10.83 -148.98 -1.61 -21.15 16 13 C 0.06 2.08 7.01 72.01 0.50 2.58 16 14 C 0.01 0.53 5.44 86.31 0.47 1.00 16 15 N -0.54 -23.81 4.53 -874.37 -3.96 -27.77 16 16 C 0.08 3.41 4.66 86.30 0.40 3.82 16 17 C -0.03 -0.92 5.64 29.85 0.17 -0.75 16 18 C 0.05 1.40 6.07 41.52 0.25 1.65 16 19 C -0.26 -5.51 11.07 66.78 0.74 -4.77 16 20 S 0.16 2.81 23.22 -56.49 -1.31 1.50 16 21 C 0.01 0.26 12.23 130.65 1.60 1.86 16 22 N -0.51 -16.14 10.35 -191.55 -1.98 -18.12 16 23 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 24 H 0.09 5.41 6.19 -2.39 -0.01 5.39 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 28 H 0.11 3.02 6.39 -2.39 -0.02 3.00 16 29 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 3.07 5.99 -2.39 -0.01 3.05 16 31 H 0.00 0.10 8.12 -2.39 -0.02 0.08 16 32 H 0.10 2.45 6.40 -2.39 -0.02 2.44 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.22 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -69.69 297.32 -0.21 -69.89 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.09 Total: 10.05 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.30 Total: -7.37 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -5.70 Total: -99.86 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.61 Total: -21.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -69.69 -0.21 -69.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds