Wall clock time and date at job start Mon Mar 30 2020 04:47:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86796 * 120.00282 * 2 1
4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1
5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1
6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1
7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3
8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1
9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1
10 10 H 1.09000 * 109.50765 * 300.08052 * 9 7 2
11 11 C 1.53094 * 109.50977 * 60.21794 * 9 7 2
12 12 O 1.43012 * 109.26041 * 176.78116 * 11 9 7
13 13 C 1.43013 * 113.73746 * 301.32640 * 12 11 9
14 14 C 1.53098 * 109.25760 * 58.67474 * 13 12 11
15 15 N 1.47015 * 109.50302 * 180.02562 * 9 7 2
16 16 C 1.46894 * 111.00255 * 57.67168 * 15 9 7
17 17 C 1.53000 * 109.47419 * 189.99822 * 16 15 9
18 18 C 1.50701 * 109.47323 * 180.02562 * 17 16 15
19 19 C 1.33641 * 122.74719 * 125.00728 * 18 17 16
20 20 S 1.76196 * 107.92070 * 180.02562 * 19 18 17
21 21 C 1.70970 * 90.28439 * 359.97438 * 20 19 18
22 22 N 1.29026 * 110.16926 * 359.74092 * 21 20 19
23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3
24 24 H 1.09001 * 109.50426 * 296.72053 * 11 9 7
25 25 H 1.08998 * 109.50459 * 56.84603 * 11 9 7
26 26 H 1.08998 * 109.51321 * 298.73772 * 13 12 11
27 27 H 1.09006 * 109.50578 * 178.60420 * 13 12 11
28 28 H 1.09004 * 109.50649 * 183.21358 * 14 13 12
29 29 H 1.09004 * 109.50907 * 63.08129 * 14 13 12
30 30 H 1.09001 * 109.47683 * 310.00140 * 16 15 9
31 31 H 1.09004 * 109.47013 * 70.00038 * 16 15 9
32 32 H 1.08997 * 109.47392 * 300.00179 * 17 16 15
33 33 H 1.09001 * 109.47258 * 59.99784 * 17 16 15
34 34 H 1.08003 * 126.03946 * 359.97438 * 19 18 17
35 35 H 1.08000 * 124.91594 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4400 -0.7000
6 1 1.4467 2.6526 -0.7001
7 6 2.0045 -1.1941 -0.0057
8 1 3.0845 -1.1941 -0.0053
9 6 1.2509 -2.4991 -0.0125
10 1 0.6226 -2.5612 0.8761
11 6 0.3750 -2.5772 -1.2657
12 8 -0.2798 -3.8480 -1.3051
13 6 0.6202 -4.9594 -1.3119
14 6 1.4986 -4.9056 -0.0591
15 7 2.2055 -3.6172 -0.0170
16 6 3.1042 -3.5469 1.1428
17 6 4.2317 -4.5677 0.9770
18 6 5.1533 -4.4960 2.1672
19 6 5.4505 -5.5619 2.9167
20 16 6.5497 -5.0393 4.1908
21 6 6.5010 -3.4399 3.5886
22 7 5.7368 -3.3784 2.5507
23 1 -0.4850 0.8401 0.0040
24 1 -0.3717 -1.7837 -1.2378
25 1 0.9977 -2.4609 -2.1527
26 1 1.2500 -4.9124 -2.2003
27 1 0.0507 -5.8889 -1.3174
28 1 2.2244 -5.7183 -0.0883
29 1 0.8736 -5.0065 0.8282
30 1 3.5284 -2.5453 1.2137
31 1 2.5436 -3.7690 2.0508
32 1 3.8076 -5.5693 0.9063
33 1 4.7924 -4.3457 0.0690
34 1 5.0813 -6.5659 2.7682
35 1 7.0357 -2.6031 4.0130
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260075179.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:47:45
Heat of formation + Delta-G solvation = -13.794199 kcal
Electronic energy + Delta-G solvation = -18516.453781 eV
Core-core repulsion = 15640.645806 eV
Total energy + Delta-G solvation = -2875.807976 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.92490 -40.20872 -36.95659 -35.18866 -33.17179 -31.67056 -30.24759 -27.75031
-26.96942 -25.73823 -24.03435 -23.13523 -21.00867 -20.46944 -18.80487 -18.62955
-17.46148 -16.89934 -16.63233 -16.35813 -15.90362 -15.56714 -15.45041 -15.28057
-14.74994 -14.28133 -14.14907 -14.02858 -13.68029 -13.06955 -12.90961 -12.66499
-12.49754 -12.46561 -12.25295 -12.04595 -11.88773 -11.26447 -11.01967 -10.70747
-10.51889 -10.37990 -10.27502 -9.68755 -9.09010 -8.20760 -6.31742 -0.17098
0.54787 0.80706 1.39393 1.40108 1.52111 1.86164 2.37803 3.04407
3.08896 3.32839 3.41353 4.04095 4.15441 4.19567 4.36877 4.41501
4.43893 4.45010 4.55473 4.59352 4.71684 4.79946 4.91029 4.95671
5.08340 5.20916 5.23038 5.38983 5.52264 5.63434 5.97370 6.21936
6.45467 6.63950 6.81929 6.87988 7.37288 8.87054
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.016535 B = 0.006086 C = 0.004589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.001328 B = 4599.509482 C = 6100.169057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C 0.014 3.986
3 Si 0.963 3.037
4 H -0.277 1.277
5 H -0.268 1.268
6 H -0.277 1.277
7 C -0.521 4.521
8 H 0.060 0.940
9 C 0.197 3.803
10 H -0.039 1.039
11 C 0.084 3.916
12 O -0.420 6.420
13 C 0.059 3.941
14 C 0.015 3.985
15 N -0.538 5.538
16 C 0.083 3.917
17 C -0.030 4.030
18 C 0.048 3.952
19 C -0.256 4.256
20 S 0.161 5.839
21 C 0.012 3.988
22 N -0.508 5.508
23 H 0.266 0.734
24 H 0.094 0.906
25 H 0.030 0.970
26 H 0.057 0.943
27 H 0.120 0.880
28 H 0.111 0.889
29 H 0.018 0.982
30 H 0.063 0.937
31 H 0.002 0.998
32 H 0.099 0.901
33 H 0.078 0.922
34 H 0.202 0.798
35 H 0.222 0.778
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.872 -12.766 6.139 18.482
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.185 4.185
3 Si 0.788 3.212
4 H -0.203 1.203
5 H -0.193 1.193
6 H -0.203 1.203
7 C -0.559 4.559
8 H 0.079 0.921
9 C 0.089 3.911
10 H -0.022 1.022
11 C 0.008 3.992
12 O -0.340 6.340
13 C -0.018 4.018
14 C -0.113 4.113
15 N -0.263 5.263
16 C -0.046 4.046
17 C -0.070 4.070
18 C -0.084 4.084
19 C -0.396 4.396
20 S 0.413 5.587
21 C -0.286 4.286
22 N -0.223 5.223
23 H 0.075 0.925
24 H 0.112 0.888
25 H 0.049 0.951
26 H 0.075 0.925
27 H 0.138 0.862
28 H 0.129 0.871
29 H 0.036 0.964
30 H 0.082 0.918
31 H 0.020 0.980
32 H 0.117 0.883
33 H 0.097 0.903
34 H 0.219 0.781
35 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges 12.265 -12.574 6.279 18.653
hybrid contribution -0.716 1.259 0.156 1.457
sum 11.549 -11.315 6.434 17.401
Atomic orbital electron populations
1.69980 1.07199 1.27809 1.51060 1.25761 0.95734 1.02624 0.94392
0.85476 0.78687 0.78837 0.78209 1.20330 1.19271 1.20258 1.21285
0.93254 0.90478 1.50854 0.92146 1.19559 0.89569 0.89465 0.92491
1.02163 1.22698 0.96343 0.83534 0.96664 1.87857 1.35259 1.15795
1.95082 1.22825 0.92310 0.89954 0.96668 1.22916 0.97363 0.93344
0.97703 1.62258 1.20335 1.02382 1.41351 1.21741 0.93094 1.00121
0.89643 1.20115 0.93140 1.00006 0.93726 1.20411 1.00188 0.87705
1.00067 1.27191 1.06659 1.05082 1.00619 1.83618 1.41810 1.04249
1.29005 1.28916 1.01147 1.02704 0.95826 1.66126 1.10291 1.30761
1.15129 0.92468 0.88835 0.95138 0.92485 0.86242 0.87111 0.96384
0.91850 0.97956 0.88260 0.90310 0.78135 0.76203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.21 11.37 21.45 0.24 -53.96 16
2 C 0.01 0.80 5.30 84.66 0.45 1.24 16
3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16
4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16
5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
7 C -0.52 -29.73 7.80 25.60 0.20 -29.53 16
8 H 0.06 3.49 6.58 -2.91 -0.02 3.47 16
9 C 0.20 10.60 1.97 44.18 0.09 10.68 16
10 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16
11 C 0.08 4.42 6.02 72.01 0.43 4.85 16
12 O -0.42 -19.54 10.83 -148.98 -1.61 -21.15 16
13 C 0.06 2.08 7.01 72.01 0.50 2.58 16
14 C 0.01 0.53 5.44 86.31 0.47 1.00 16
15 N -0.54 -23.81 4.53 -874.37 -3.96 -27.77 16
16 C 0.08 3.41 4.66 86.30 0.40 3.82 16
17 C -0.03 -0.92 5.64 29.85 0.17 -0.75 16
18 C 0.05 1.40 6.07 41.52 0.25 1.65 16
19 C -0.26 -5.51 11.07 66.78 0.74 -4.77 16
20 S 0.16 2.81 23.22 -56.49 -1.31 1.50 16
21 C 0.01 0.26 12.23 130.65 1.60 1.86 16
22 N -0.51 -16.14 10.35 -191.55 -1.98 -18.12 16
23 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16
24 H 0.09 5.41 6.19 -2.39 -0.01 5.39 16
25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
27 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16
28 H 0.11 3.02 6.39 -2.39 -0.02 3.00 16
29 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16
30 H 0.06 3.07 5.99 -2.39 -0.01 3.05 16
31 H 0.00 0.10 8.12 -2.39 -0.02 0.08 16
32 H 0.10 2.45 6.40 -2.39 -0.02 2.44 16
33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
34 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16
35 H 0.22 3.51 8.06 -2.91 -0.02 3.48 16
Total: -1.00 -69.69 297.32 -0.21 -69.89
By element:
Atomic # 1 Polarization: 8.97 SS G_CDS: 1.09 Total: 10.05 kcal
Atomic # 6 Polarization: -12.68 SS G_CDS: 5.30 Total: -7.37 kcal
Atomic # 7 Polarization: -94.16 SS G_CDS: -5.70 Total: -99.86 kcal
Atomic # 8 Polarization: -19.54 SS G_CDS: -1.61 Total: -21.15 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal
Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal
Total: -69.69 -0.21 -69.89 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260075179.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal
(2) G-P(sol) polarization free energy of solvation -69.687 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds