Wall clock time and date at job start Mon Mar 30 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34331 * 126.16631 * 2 1 4 4 O 1.34756 * 107.11057 * 180.02562 * 3 2 1 5 5 C 1.33961 * 107.75960 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.62301 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47112 * 270.03115 * 6 5 4 8 8 C 1.46462 * 111.00284 * 44.01233 * 7 6 5 9 9 C 1.53252 * 109.86106 * 197.76520 * 8 7 6 10 10 S 1.81900 * 108.50644 * 298.00044 * 9 8 7 11 11 C 1.81899 * 101.91426 * 51.30203 * 10 9 8 12 12 C 1.46474 * 111.00005 * 169.99924 * 7 6 5 13 13 H 1.08994 * 109.40078 * 282.34990 * 12 7 6 14 14 C 1.50702 * 109.40395 * 42.18808 * 12 7 6 15 15 H 1.07995 * 120.00351 * 5.57182 * 14 12 7 16 16 C 1.37882 * 119.99459 * 185.56118 * 14 12 7 17 17 N 1.31513 * 120.00080 * 8.82785 * 16 14 12 18 18 Si 1.86801 * 119.99639 * 188.81830 * 16 14 12 19 19 H 1.48502 * 109.46485 * 94.99757 * 18 16 14 20 20 H 1.48490 * 109.47178 * 214.99483 * 18 16 14 21 21 H 1.48498 * 109.47439 * 335.00222 * 18 16 14 22 22 N 1.30261 * 108.75871 * 0.26606 * 5 4 3 23 23 H 1.09007 * 109.47041 * 89.97674 * 1 2 3 24 24 H 1.08994 * 109.47589 * 209.97357 * 1 2 3 25 25 H 1.09000 * 109.47579 * 329.97574 * 1 2 3 26 26 H 1.08000 * 126.44520 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46635 * 30.02437 * 6 5 4 28 28 H 1.08995 * 109.47366 * 150.02677 * 6 5 4 29 29 H 1.08994 * 109.41150 * 317.88833 * 8 7 6 30 30 H 1.09005 * 109.40385 * 77.64802 * 8 7 6 31 31 H 1.09007 * 109.63039 * 178.29596 * 9 8 7 32 32 H 1.08996 * 109.79198 * 57.80429 * 9 8 7 33 33 H 1.08993 * 109.63172 * 188.98433 * 11 10 9 34 34 H 1.09005 * 109.62890 * 68.39822 * 11 10 9 35 35 H 0.96998 * 119.99696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2996 1.0845 0.0000 4 8 3.5734 0.6445 -0.0006 5 6 3.5431 -0.6948 -0.0003 6 6 4.7479 -1.6000 -0.0014 7 7 5.1385 -1.8937 -1.3867 8 6 5.1073 -0.6822 -2.2090 9 6 5.0780 -1.0612 -3.6936 10 16 6.6023 -1.9726 -4.0870 11 6 6.6189 -3.2523 -2.7944 12 6 6.4361 -2.5716 -1.4337 13 1 7.2315 -1.8417 -1.2841 14 6 6.4981 -3.6104 -0.3436 15 1 5.6252 -3.8137 0.2589 16 6 7.6693 -4.3013 -0.1157 17 7 8.7764 -3.9381 -0.7256 18 14 7.6835 -5.7532 1.0596 19 1 7.5055 -7.0124 0.2928 20 1 8.9803 -5.7927 1.7819 21 1 6.5759 -5.6088 2.0382 22 7 2.3005 -1.0857 -0.0054 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8901 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 1.9769 2.1151 -0.0004 27 1 5.5733 -1.1068 0.5120 28 1 4.5042 -2.5299 0.5124 29 1 4.2173 -0.1020 -1.9657 30 1 5.9952 -0.0834 -2.0055 31 1 5.0244 -0.1578 -4.3013 32 1 4.2120 -1.6910 -3.8967 33 1 7.5719 -3.7808 -2.8145 34 1 5.8034 -3.9553 -2.9647 35 1 9.6004 -4.4240 -0.5649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:53 Heat of formation + Delta-G solvation = 31.679728 kcal Electronic energy + Delta-G solvation = -18757.386430 eV Core-core repulsion = 15883.550352 eV Total energy + Delta-G solvation = -2873.836078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.16174 -37.70922 -34.95613 -33.29407 -32.03949 -30.51408 -29.65799 -27.22459 -25.51777 -24.93581 -22.57919 -21.28860 -20.74087 -19.71088 -17.15084 -16.84261 -16.34834 -15.66125 -15.04040 -14.93708 -14.50984 -14.08095 -13.59768 -13.43249 -13.23725 -12.95179 -12.81474 -12.45795 -12.16328 -11.81382 -11.70672 -11.52909 -11.12083 -10.98254 -10.75221 -10.59714 -10.43410 -10.27074 -10.18869 -9.54430 -8.73473 -8.66436 -8.53517 -7.52045 -6.92720 -6.24555 -4.30904 1.62329 2.61178 2.83965 2.98933 3.21233 3.30290 3.32500 3.46552 4.20496 4.26126 4.66212 4.90662 4.99353 5.10527 5.41537 5.49338 5.53198 5.63021 5.66960 5.73200 5.89646 5.99430 6.06303 6.13761 6.25428 6.33543 6.48822 6.52373 6.58769 6.95571 7.33011 7.47291 7.66814 7.93088 8.01749 8.23231 8.75604 9.35659 10.82604 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.006855 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.056078 B = 4083.368771 C = 5264.633868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 C -0.095 4.095 4 O -0.206 6.206 5 C 0.214 3.786 6 C 0.168 3.832 7 N -0.540 5.540 8 C 0.053 3.947 9 C -0.063 4.063 10 S -0.333 6.333 11 C -0.032 4.032 12 C 0.221 3.779 13 H 0.028 0.972 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.880 5.880 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.271 1.271 22 N -0.473 5.473 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.208 0.792 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 8.366 0.350 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 C -0.165 4.165 4 O -0.093 6.093 5 C 0.007 3.993 6 C 0.040 3.960 7 N -0.268 5.268 8 C -0.077 4.077 9 C -0.211 4.211 10 S -0.106 6.106 11 C -0.180 4.180 12 C 0.114 3.886 13 H 0.046 0.954 14 C -0.565 4.565 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.517 5.517 18 Si 0.725 3.275 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.196 1.196 22 N -0.203 5.203 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.225 0.775 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.237 7.584 -0.738 12.762 hybrid contribution -0.042 0.352 1.700 1.736 sum -10.279 7.936 0.962 13.022 Atomic orbital electron populations 1.20058 0.86919 1.03012 1.02646 1.21851 0.98054 0.88583 1.05391 1.24640 0.80733 1.00707 1.10462 1.84526 1.30344 1.24724 1.69724 1.26831 0.95981 0.78748 0.97788 1.20576 0.87431 0.95387 0.92630 1.61418 1.34862 1.23040 1.07435 1.22251 1.00512 0.92236 0.92659 1.23263 0.98080 1.01600 0.98201 1.86556 1.33828 1.42192 1.48005 1.23881 1.05782 0.95810 0.92504 1.19430 0.83098 0.93537 0.92509 0.95406 1.21173 0.97619 1.21206 1.16503 0.90996 1.24982 0.95095 0.97411 0.96094 1.69961 0.99532 1.39290 1.42893 0.86478 0.77608 0.82673 0.80760 1.20397 1.21173 1.19562 1.70433 1.00542 1.30790 1.18530 0.90938 0.90692 0.91084 0.77499 0.91799 0.85642 0.91712 0.93940 0.89056 0.90021 0.86451 0.91219 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.43 36.00 0.38 -0.32 16 2 C -0.02 -0.27 7.11 -82.82 -0.59 -0.86 16 3 C -0.09 -1.23 12.08 29.35 0.35 -0.87 16 4 O -0.21 -3.34 9.73 5.37 0.05 -3.28 16 5 C 0.21 3.81 6.01 -12.94 -0.08 3.74 16 6 C 0.17 3.24 5.03 -4.98 -0.03 3.21 16 7 N -0.54 -11.21 4.46 -229.87 -1.03 -12.24 16 8 C 0.05 1.00 5.15 -3.93 -0.02 0.98 16 9 C -0.06 -1.12 6.69 37.29 0.25 -0.87 16 10 S -0.33 -6.89 22.40 -107.50 -2.41 -9.30 16 11 C -0.03 -0.73 5.81 37.28 0.22 -0.51 16 12 C 0.22 5.22 1.71 -68.97 -0.12 5.11 16 13 H 0.03 0.75 7.86 -51.93 -0.41 0.34 16 14 C -0.53 -13.11 7.76 -34.44 -0.27 -13.38 16 15 H 0.07 1.77 5.83 -52.49 -0.31 1.46 16 16 C 0.07 1.76 5.20 -17.82 -0.09 1.66 16 17 N -0.88 -23.56 12.11 55.43 0.67 -22.89 16 18 Si 0.90 19.98 29.55 -169.99 -5.02 14.96 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 N -0.47 -8.46 11.29 -7.36 -0.08 -8.54 16 23 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.13 2.51 6.23 -51.93 -0.32 2.19 16 29 H 0.06 1.16 5.24 -51.93 -0.27 0.88 16 30 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16 31 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.12 2.97 6.82 -51.93 -0.35 2.62 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -27.98 297.01 -7.92 -35.90 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.59 Total: 3.05 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 0.01 Total: -2.12 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.44 Total: -43.67 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.05 Total: -3.28 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -2.41 Total: -9.30 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.98 -7.92 -35.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.578 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds