Wall clock time and date at job start Mon Mar 30 2020 05:00:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.34331 * 126.16631 * 2 1
4 4 O 1.34756 * 107.11057 * 180.02562 * 3 2 1
5 5 C 1.33961 * 107.75960 * 359.97438 * 4 3 2
6 6 C 1.50700 * 125.62301 * 179.97438 * 5 4 3
7 7 N 1.46900 * 109.47112 * 270.03115 * 6 5 4
8 8 C 1.46462 * 111.00284 * 44.01233 * 7 6 5
9 9 C 1.53252 * 109.86106 * 197.76520 * 8 7 6
10 10 S 1.81900 * 108.50644 * 298.00044 * 9 8 7
11 11 C 1.81899 * 101.91426 * 51.30203 * 10 9 8
12 12 C 1.46474 * 111.00005 * 169.99924 * 7 6 5
13 13 H 1.08994 * 109.40078 * 282.34990 * 12 7 6
14 14 C 1.50702 * 109.40395 * 42.18808 * 12 7 6
15 15 H 1.07995 * 120.00351 * 5.57182 * 14 12 7
16 16 C 1.37882 * 119.99459 * 185.56118 * 14 12 7
17 17 N 1.31513 * 120.00080 * 8.82785 * 16 14 12
18 18 Si 1.86801 * 119.99639 * 188.81830 * 16 14 12
19 19 H 1.48502 * 109.46485 * 94.99757 * 18 16 14
20 20 H 1.48490 * 109.47178 * 214.99483 * 18 16 14
21 21 H 1.48498 * 109.47439 * 335.00222 * 18 16 14
22 22 N 1.30261 * 108.75871 * 0.26606 * 5 4 3
23 23 H 1.09007 * 109.47041 * 89.97674 * 1 2 3
24 24 H 1.08994 * 109.47589 * 209.97357 * 1 2 3
25 25 H 1.09000 * 109.47579 * 329.97574 * 1 2 3
26 26 H 1.08000 * 126.44520 * 359.97438 * 3 2 1
27 27 H 1.09000 * 109.46635 * 30.02437 * 6 5 4
28 28 H 1.08995 * 109.47366 * 150.02677 * 6 5 4
29 29 H 1.08994 * 109.41150 * 317.88833 * 8 7 6
30 30 H 1.09005 * 109.40385 * 77.64802 * 8 7 6
31 31 H 1.09007 * 109.63039 * 178.29596 * 9 8 7
32 32 H 1.08996 * 109.79198 * 57.80429 * 9 8 7
33 33 H 1.08993 * 109.63172 * 188.98433 * 11 10 9
34 34 H 1.09005 * 109.62890 * 68.39822 * 11 10 9
35 35 H 0.96998 * 119.99696 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2996 1.0845 0.0000
4 8 3.5734 0.6445 -0.0006
5 6 3.5431 -0.6948 -0.0003
6 6 4.7479 -1.6000 -0.0014
7 7 5.1385 -1.8937 -1.3867
8 6 5.1073 -0.6822 -2.2090
9 6 5.0780 -1.0612 -3.6936
10 16 6.6023 -1.9726 -4.0870
11 6 6.6189 -3.2523 -2.7944
12 6 6.4361 -2.5716 -1.4337
13 1 7.2315 -1.8417 -1.2841
14 6 6.4981 -3.6104 -0.3436
15 1 5.6252 -3.8137 0.2589
16 6 7.6693 -4.3013 -0.1157
17 7 8.7764 -3.9381 -0.7256
18 14 7.6835 -5.7532 1.0596
19 1 7.5055 -7.0124 0.2928
20 1 8.9803 -5.7927 1.7819
21 1 6.5759 -5.6088 2.0382
22 7 2.3005 -1.0857 -0.0054
23 1 -0.3633 0.0004 -1.0277
24 1 -0.3634 -0.8901 0.5134
25 1 -0.3634 0.8897 0.5142
26 1 1.9769 2.1151 -0.0004
27 1 5.5733 -1.1068 0.5120
28 1 4.5042 -2.5299 0.5124
29 1 4.2173 -0.1020 -1.9657
30 1 5.9952 -0.0834 -2.0055
31 1 5.0244 -0.1578 -4.3013
32 1 4.2120 -1.6910 -3.8967
33 1 7.5719 -3.7808 -2.8145
34 1 5.8034 -3.9553 -2.9647
35 1 9.6004 -4.4240 -0.5649
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260147640.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:53
Heat of formation + Delta-G solvation = 31.679728 kcal
Electronic energy + Delta-G solvation = -18757.386430 eV
Core-core repulsion = 15883.550352 eV
Total energy + Delta-G solvation = -2873.836078 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-43.16174 -37.70922 -34.95613 -33.29407 -32.03949 -30.51408 -29.65799 -27.22459
-25.51777 -24.93581 -22.57919 -21.28860 -20.74087 -19.71088 -17.15084 -16.84261
-16.34834 -15.66125 -15.04040 -14.93708 -14.50984 -14.08095 -13.59768 -13.43249
-13.23725 -12.95179 -12.81474 -12.45795 -12.16328 -11.81382 -11.70672 -11.52909
-11.12083 -10.98254 -10.75221 -10.59714 -10.43410 -10.27074 -10.18869 -9.54430
-8.73473 -8.66436 -8.53517 -7.52045 -6.92720 -6.24555 -4.30904 1.62329
2.61178 2.83965 2.98933 3.21233 3.30290 3.32500 3.46552 4.20496
4.26126 4.66212 4.90662 4.99353 5.10527 5.41537 5.49338 5.53198
5.63021 5.66960 5.73200 5.89646 5.99430 6.06303 6.13761 6.25428
6.33543 6.48822 6.52373 6.58769 6.95571 7.33011 7.47291 7.66814
7.93088 8.01749 8.23231 8.75604 9.35659 10.82604
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.017627 B = 0.006855 C = 0.005317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.056078 B = 4083.368771 C = 5264.633868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C -0.019 4.019
3 C -0.095 4.095
4 O -0.206 6.206
5 C 0.214 3.786
6 C 0.168 3.832
7 N -0.540 5.540
8 C 0.053 3.947
9 C -0.063 4.063
10 S -0.333 6.333
11 C -0.032 4.032
12 C 0.221 3.779
13 H 0.028 0.972
14 C -0.525 4.525
15 H 0.072 0.928
16 C 0.069 3.931
17 N -0.880 5.880
18 Si 0.898 3.102
19 H -0.278 1.278
20 H -0.286 1.286
21 H -0.271 1.271
22 N -0.473 5.473
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.070 0.930
26 H 0.208 0.792
27 H 0.064 0.936
28 H 0.126 0.874
29 H 0.065 0.935
30 H 0.042 0.958
31 H 0.091 0.909
32 H 0.081 0.919
33 H 0.117 0.883
34 H 0.069 0.931
35 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.714 8.366 0.350 13.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.139 4.139
3 C -0.165 4.165
4 O -0.093 6.093
5 C 0.007 3.993
6 C 0.040 3.960
7 N -0.268 5.268
8 C -0.077 4.077
9 C -0.211 4.211
10 S -0.106 6.106
11 C -0.180 4.180
12 C 0.114 3.886
13 H 0.046 0.954
14 C -0.565 4.565
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.517 5.517
18 Si 0.725 3.275
19 H -0.204 1.204
20 H -0.212 1.212
21 H -0.196 1.196
22 N -0.203 5.203
23 H 0.091 0.909
24 H 0.093 0.907
25 H 0.089 0.911
26 H 0.225 0.775
27 H 0.082 0.918
28 H 0.144 0.856
29 H 0.083 0.917
30 H 0.061 0.939
31 H 0.109 0.891
32 H 0.100 0.900
33 H 0.135 0.865
34 H 0.088 0.912
35 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -10.237 7.584 -0.738 12.762
hybrid contribution -0.042 0.352 1.700 1.736
sum -10.279 7.936 0.962 13.022
Atomic orbital electron populations
1.20058 0.86919 1.03012 1.02646 1.21851 0.98054 0.88583 1.05391
1.24640 0.80733 1.00707 1.10462 1.84526 1.30344 1.24724 1.69724
1.26831 0.95981 0.78748 0.97788 1.20576 0.87431 0.95387 0.92630
1.61418 1.34862 1.23040 1.07435 1.22251 1.00512 0.92236 0.92659
1.23263 0.98080 1.01600 0.98201 1.86556 1.33828 1.42192 1.48005
1.23881 1.05782 0.95810 0.92504 1.19430 0.83098 0.93537 0.92509
0.95406 1.21173 0.97619 1.21206 1.16503 0.90996 1.24982 0.95095
0.97411 0.96094 1.69961 0.99532 1.39290 1.42893 0.86478 0.77608
0.82673 0.80760 1.20397 1.21173 1.19562 1.70433 1.00542 1.30790
1.18530 0.90938 0.90692 0.91084 0.77499 0.91799 0.85642 0.91712
0.93940 0.89056 0.90021 0.86451 0.91219 0.92403
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.70 10.43 36.00 0.38 -0.32 16
2 C -0.02 -0.27 7.11 -82.82 -0.59 -0.86 16
3 C -0.09 -1.23 12.08 29.35 0.35 -0.87 16
4 O -0.21 -3.34 9.73 5.37 0.05 -3.28 16
5 C 0.21 3.81 6.01 -12.94 -0.08 3.74 16
6 C 0.17 3.24 5.03 -4.98 -0.03 3.21 16
7 N -0.54 -11.21 4.46 -229.87 -1.03 -12.24 16
8 C 0.05 1.00 5.15 -3.93 -0.02 0.98 16
9 C -0.06 -1.12 6.69 37.29 0.25 -0.87 16
10 S -0.33 -6.89 22.40 -107.50 -2.41 -9.30 16
11 C -0.03 -0.73 5.81 37.28 0.22 -0.51 16
12 C 0.22 5.22 1.71 -68.97 -0.12 5.11 16
13 H 0.03 0.75 7.86 -51.93 -0.41 0.34 16
14 C -0.53 -13.11 7.76 -34.44 -0.27 -13.38 16
15 H 0.07 1.77 5.83 -52.49 -0.31 1.46 16
16 C 0.07 1.76 5.20 -17.82 -0.09 1.66 16
17 N -0.88 -23.56 12.11 55.43 0.67 -22.89 16
18 Si 0.90 19.98 29.55 -169.99 -5.02 14.96 16
19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16
20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16
21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
22 N -0.47 -8.46 11.29 -7.36 -0.08 -8.54 16
23 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16
24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.21 1.72 8.06 -52.49 -0.42 1.30 16
27 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16
28 H 0.13 2.51 6.23 -51.93 -0.32 2.19 16
29 H 0.06 1.16 5.24 -51.93 -0.27 0.88 16
30 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16
31 H 0.09 1.41 8.14 -51.92 -0.42 0.98 16
32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16
33 H 0.12 2.97 6.82 -51.93 -0.35 2.62 16
34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16
35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 297.01 15.07 4.48 4.48
Total: -1.00 -27.98 297.01 -7.92 -35.90
By element:
Atomic # 1 Polarization: 7.64 SS G_CDS: -4.59 Total: 3.05 kcal
Atomic # 6 Polarization: -2.13 SS G_CDS: 0.01 Total: -2.12 kcal
Atomic # 7 Polarization: -43.24 SS G_CDS: -0.44 Total: -43.67 kcal
Atomic # 8 Polarization: -3.34 SS G_CDS: 0.05 Total: -3.28 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal
Atomic # 16 Polarization: -6.89 SS G_CDS: -2.41 Total: -9.30 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -27.98 -7.92 -35.90 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260147640.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.578 kcal
(2) G-P(sol) polarization free energy of solvation -27.976 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds