Wall clock time and date at job start Mon Mar 30 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34331 * 126.16631 * 2 1 4 4 O 1.34756 * 107.11057 * 180.02562 * 3 2 1 5 5 C 1.33961 * 107.75960 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.62301 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47112 * 270.03115 * 6 5 4 8 8 C 1.46462 * 111.00284 * 44.01233 * 7 6 5 9 9 C 1.53252 * 109.86106 * 197.76520 * 8 7 6 10 10 S 1.81900 * 108.50644 * 298.00044 * 9 8 7 11 11 C 1.81899 * 101.91426 * 51.30203 * 10 9 8 12 12 C 1.46474 * 111.00005 * 169.99924 * 7 6 5 13 13 H 1.08994 * 109.40078 * 282.34990 * 12 7 6 14 14 C 1.50702 * 109.40395 * 42.18808 * 12 7 6 15 15 H 1.07995 * 120.00351 * 5.57182 * 14 12 7 16 16 C 1.37882 * 119.99459 * 185.56118 * 14 12 7 17 17 N 1.31513 * 120.00080 * 8.82785 * 16 14 12 18 18 Si 1.86801 * 119.99639 * 188.81830 * 16 14 12 19 19 H 1.48502 * 109.46485 * 94.99757 * 18 16 14 20 20 H 1.48490 * 109.47178 * 214.99483 * 18 16 14 21 21 H 1.48498 * 109.47439 * 335.00222 * 18 16 14 22 22 N 1.30261 * 108.75871 * 0.26606 * 5 4 3 23 23 H 1.09007 * 109.47041 * 89.97674 * 1 2 3 24 24 H 1.08994 * 109.47589 * 209.97357 * 1 2 3 25 25 H 1.09000 * 109.47579 * 329.97574 * 1 2 3 26 26 H 1.08000 * 126.44520 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46635 * 30.02437 * 6 5 4 28 28 H 1.08995 * 109.47366 * 150.02677 * 6 5 4 29 29 H 1.08994 * 109.41150 * 317.88833 * 8 7 6 30 30 H 1.09005 * 109.40385 * 77.64802 * 8 7 6 31 31 H 1.09007 * 109.63039 * 178.29596 * 9 8 7 32 32 H 1.08996 * 109.79198 * 57.80429 * 9 8 7 33 33 H 1.08993 * 109.63172 * 188.98433 * 11 10 9 34 34 H 1.09005 * 109.62890 * 68.39822 * 11 10 9 35 35 H 0.96998 * 119.99696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2996 1.0845 0.0000 4 8 3.5734 0.6445 -0.0006 5 6 3.5431 -0.6948 -0.0003 6 6 4.7479 -1.6000 -0.0014 7 7 5.1385 -1.8937 -1.3867 8 6 5.1073 -0.6822 -2.2090 9 6 5.0780 -1.0612 -3.6936 10 16 6.6023 -1.9726 -4.0870 11 6 6.6189 -3.2523 -2.7944 12 6 6.4361 -2.5716 -1.4337 13 1 7.2315 -1.8417 -1.2841 14 6 6.4981 -3.6104 -0.3436 15 1 5.6252 -3.8137 0.2589 16 6 7.6693 -4.3013 -0.1157 17 7 8.7764 -3.9381 -0.7256 18 14 7.6835 -5.7532 1.0596 19 1 7.5055 -7.0124 0.2928 20 1 8.9803 -5.7927 1.7819 21 1 6.5759 -5.6088 2.0382 22 7 2.3005 -1.0857 -0.0054 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8901 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 1.9769 2.1151 -0.0004 27 1 5.5733 -1.1068 0.5120 28 1 4.5042 -2.5299 0.5124 29 1 4.2173 -0.1020 -1.9657 30 1 5.9952 -0.0834 -2.0055 31 1 5.0244 -0.1578 -4.3013 32 1 4.2120 -1.6910 -3.8967 33 1 7.5719 -3.7808 -2.8145 34 1 5.8034 -3.9553 -2.9647 35 1 9.6004 -4.4240 -0.5649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:53 Heat of formation + Delta-G solvation = 11.905213 kcal Electronic energy + Delta-G solvation = -18758.243917 eV Core-core repulsion = 15883.550352 eV Total energy + Delta-G solvation = -2874.693565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.36297 -39.37693 -36.12388 -35.15856 -33.34474 -32.18775 -31.12107 -28.34612 -27.39537 -26.40005 -24.17897 -22.60788 -22.03456 -21.37056 -18.82493 -18.08510 -17.84167 -17.29283 -16.79176 -16.33346 -15.91011 -15.69130 -15.08405 -14.94131 -14.51573 -14.29575 -14.07117 -13.95242 -13.39917 -13.32441 -13.21492 -12.94120 -12.84037 -12.81088 -12.40928 -12.22970 -12.10872 -11.87289 -11.49627 -11.25706 -10.63514 -10.46313 -9.69595 -9.21855 -8.62199 -8.21118 -6.33237 0.45158 0.99091 1.42989 1.46826 1.55625 1.64400 1.70952 1.82202 2.39868 2.97071 3.10779 3.13911 3.88733 3.90136 4.04379 4.13476 4.28935 4.33915 4.48567 4.54126 4.60100 4.66330 4.76483 4.81934 4.83799 4.91955 5.00870 5.07982 5.11515 5.42872 5.45347 5.60788 5.81157 6.07828 6.43656 6.79091 6.82266 7.36707 8.85963 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.006855 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.056078 B = 4083.368771 C = 5264.633868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.042 4.042 3 C -0.074 4.074 4 O -0.215 6.215 5 C 0.190 3.810 6 C 0.175 3.825 7 N -0.544 5.544 8 C 0.058 3.942 9 C -0.052 4.052 10 S -0.337 6.337 11 C -0.027 4.027 12 C 0.232 3.768 13 H -0.009 1.009 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.911 5.911 18 Si 0.957 3.043 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.265 1.265 22 N -0.495 5.495 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.258 0.742 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 9.852 0.377 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.161 4.161 3 C -0.144 4.144 4 O -0.102 6.102 5 C -0.017 4.017 6 C 0.047 3.953 7 N -0.271 5.271 8 C -0.072 4.072 9 C -0.201 4.201 10 S -0.110 6.110 11 C -0.176 4.176 12 C 0.124 3.876 13 H 0.008 0.992 14 C -0.573 4.573 15 H 0.091 0.909 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.189 1.189 22 N -0.226 5.226 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.274 0.726 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.144 0.856 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.463 9.083 -0.709 15.438 hybrid contribution 0.525 0.032 1.683 1.763 sum -11.938 9.115 0.974 15.051 Atomic orbital electron populations 1.20197 0.84101 1.04289 1.03680 1.22545 0.99859 0.87886 1.05840 1.25646 0.79074 1.02495 1.07139 1.84514 1.32188 1.23822 1.69638 1.26164 0.95367 0.79367 1.00765 1.20255 0.88145 0.95337 0.91559 1.61369 1.32782 1.24259 1.08711 1.22241 1.00689 0.91388 0.92832 1.23384 0.96177 1.02501 0.98009 1.86493 1.36241 1.41741 1.46530 1.23542 1.04093 0.96429 0.93535 1.19116 0.83380 0.92565 0.92510 0.99187 1.21435 0.97627 1.21357 1.16891 0.90932 1.25680 0.94767 0.99526 0.97571 1.70072 1.00012 1.40414 1.44383 0.85547 0.77582 0.79642 0.78977 1.20236 1.21090 1.18886 1.70390 1.00980 1.32883 1.18394 0.89935 0.91488 0.87791 0.72591 0.92752 0.87041 0.90133 0.94964 0.85634 0.89531 0.89145 0.91663 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.43 71.23 0.74 -0.36 16 2 C -0.04 -1.07 7.11 41.26 0.29 -0.78 16 3 C -0.07 -1.65 12.08 66.93 0.81 -0.84 16 4 O -0.22 -6.54 9.73 -3.71 -0.04 -6.57 16 5 C 0.19 6.66 6.01 88.34 0.53 7.19 16 6 C 0.17 6.90 5.03 85.56 0.43 7.33 16 7 N -0.54 -22.88 4.46 -881.19 -3.93 -26.81 16 8 C 0.06 2.12 5.15 86.47 0.45 2.57 16 9 C -0.05 -1.77 6.69 72.07 0.48 -1.29 16 10 S -0.34 -13.88 22.40 -56.49 -1.27 -15.15 16 11 C -0.03 -1.30 5.81 72.06 0.42 -0.88 16 12 C 0.23 11.33 1.71 44.33 0.08 11.41 16 13 H -0.01 -0.52 7.86 -2.39 -0.02 -0.54 16 14 C -0.53 -27.42 7.76 25.60 0.20 -27.22 16 15 H 0.07 3.66 5.83 -2.91 -0.02 3.64 16 16 C 0.03 1.36 5.20 84.66 0.44 1.80 16 17 N -0.91 -50.36 12.11 21.45 0.26 -50.10 16 18 Si 0.96 41.62 29.55 68.60 2.03 43.65 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 N -0.49 -17.13 11.29 -291.99 -3.30 -20.43 16 23 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.26 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16 28 H 0.11 4.63 6.23 -2.39 -0.01 4.61 16 29 H 0.08 2.73 5.24 -2.39 -0.01 2.72 16 30 H 0.03 1.25 7.92 -2.38 -0.02 1.23 16 31 H 0.13 3.44 8.14 -2.38 -0.02 3.42 16 32 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.09 4.78 6.82 -2.39 -0.02 4.77 16 34 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16 35 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -61.95 297.01 -0.29 -62.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.09 Total: 14.23 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.87 Total: -1.06 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -6.97 Total: -97.34 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.04 Total: -6.57 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: -13.88 SS G_CDS: -1.27 Total: -15.15 kcal Total: -61.95 -0.29 -62.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.144 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds