Wall clock time and date at job start Mon Mar 30 2020 05:00:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.34331 * 126.16631 * 2 1
4 4 O 1.34756 * 107.11057 * 180.02562 * 3 2 1
5 5 C 1.33961 * 107.75960 * 359.97438 * 4 3 2
6 6 C 1.50700 * 125.62301 * 179.97438 * 5 4 3
7 7 N 1.46900 * 109.47112 * 270.03115 * 6 5 4
8 8 C 1.46462 * 111.00284 * 44.01233 * 7 6 5
9 9 C 1.53252 * 109.86106 * 197.76520 * 8 7 6
10 10 S 1.81900 * 108.50644 * 298.00044 * 9 8 7
11 11 C 1.81899 * 101.91426 * 51.30203 * 10 9 8
12 12 C 1.46474 * 111.00005 * 169.99924 * 7 6 5
13 13 H 1.08994 * 109.40078 * 282.34990 * 12 7 6
14 14 C 1.50702 * 109.40395 * 42.18808 * 12 7 6
15 15 H 1.07995 * 120.00351 * 5.57182 * 14 12 7
16 16 C 1.37882 * 119.99459 * 185.56118 * 14 12 7
17 17 N 1.31513 * 120.00080 * 8.82785 * 16 14 12
18 18 Si 1.86801 * 119.99639 * 188.81830 * 16 14 12
19 19 H 1.48502 * 109.46485 * 94.99757 * 18 16 14
20 20 H 1.48490 * 109.47178 * 214.99483 * 18 16 14
21 21 H 1.48498 * 109.47439 * 335.00222 * 18 16 14
22 22 N 1.30261 * 108.75871 * 0.26606 * 5 4 3
23 23 H 1.09007 * 109.47041 * 89.97674 * 1 2 3
24 24 H 1.08994 * 109.47589 * 209.97357 * 1 2 3
25 25 H 1.09000 * 109.47579 * 329.97574 * 1 2 3
26 26 H 1.08000 * 126.44520 * 359.97438 * 3 2 1
27 27 H 1.09000 * 109.46635 * 30.02437 * 6 5 4
28 28 H 1.08995 * 109.47366 * 150.02677 * 6 5 4
29 29 H 1.08994 * 109.41150 * 317.88833 * 8 7 6
30 30 H 1.09005 * 109.40385 * 77.64802 * 8 7 6
31 31 H 1.09007 * 109.63039 * 178.29596 * 9 8 7
32 32 H 1.08996 * 109.79198 * 57.80429 * 9 8 7
33 33 H 1.08993 * 109.63172 * 188.98433 * 11 10 9
34 34 H 1.09005 * 109.62890 * 68.39822 * 11 10 9
35 35 H 0.96998 * 119.99696 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2996 1.0845 0.0000
4 8 3.5734 0.6445 -0.0006
5 6 3.5431 -0.6948 -0.0003
6 6 4.7479 -1.6000 -0.0014
7 7 5.1385 -1.8937 -1.3867
8 6 5.1073 -0.6822 -2.2090
9 6 5.0780 -1.0612 -3.6936
10 16 6.6023 -1.9726 -4.0870
11 6 6.6189 -3.2523 -2.7944
12 6 6.4361 -2.5716 -1.4337
13 1 7.2315 -1.8417 -1.2841
14 6 6.4981 -3.6104 -0.3436
15 1 5.6252 -3.8137 0.2589
16 6 7.6693 -4.3013 -0.1157
17 7 8.7764 -3.9381 -0.7256
18 14 7.6835 -5.7532 1.0596
19 1 7.5055 -7.0124 0.2928
20 1 8.9803 -5.7927 1.7819
21 1 6.5759 -5.6088 2.0382
22 7 2.3005 -1.0857 -0.0054
23 1 -0.3633 0.0004 -1.0277
24 1 -0.3634 -0.8901 0.5134
25 1 -0.3634 0.8897 0.5142
26 1 1.9769 2.1151 -0.0004
27 1 5.5733 -1.1068 0.5120
28 1 4.5042 -2.5299 0.5124
29 1 4.2173 -0.1020 -1.9657
30 1 5.9952 -0.0834 -2.0055
31 1 5.0244 -0.1578 -4.3013
32 1 4.2120 -1.6910 -3.8967
33 1 7.5719 -3.7808 -2.8145
34 1 5.8034 -3.9553 -2.9647
35 1 9.6004 -4.4240 -0.5649
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260147640.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:53
Heat of formation + Delta-G solvation = 11.905213 kcal
Electronic energy + Delta-G solvation = -18758.243917 eV
Core-core repulsion = 15883.550352 eV
Total energy + Delta-G solvation = -2874.693565 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-44.36297 -39.37693 -36.12388 -35.15856 -33.34474 -32.18775 -31.12107 -28.34612
-27.39537 -26.40005 -24.17897 -22.60788 -22.03456 -21.37056 -18.82493 -18.08510
-17.84167 -17.29283 -16.79176 -16.33346 -15.91011 -15.69130 -15.08405 -14.94131
-14.51573 -14.29575 -14.07117 -13.95242 -13.39917 -13.32441 -13.21492 -12.94120
-12.84037 -12.81088 -12.40928 -12.22970 -12.10872 -11.87289 -11.49627 -11.25706
-10.63514 -10.46313 -9.69595 -9.21855 -8.62199 -8.21118 -6.33237 0.45158
0.99091 1.42989 1.46826 1.55625 1.64400 1.70952 1.82202 2.39868
2.97071 3.10779 3.13911 3.88733 3.90136 4.04379 4.13476 4.28935
4.33915 4.48567 4.54126 4.60100 4.66330 4.76483 4.81934 4.83799
4.91955 5.00870 5.07982 5.11515 5.42872 5.45347 5.60788 5.81157
6.07828 6.43656 6.79091 6.82266 7.36707 8.85963
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.017627 B = 0.006855 C = 0.005317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.056078 B = 4083.368771 C = 5264.633868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.042 4.042
3 C -0.074 4.074
4 O -0.215 6.215
5 C 0.190 3.810
6 C 0.175 3.825
7 N -0.544 5.544
8 C 0.058 3.942
9 C -0.052 4.052
10 S -0.337 6.337
11 C -0.027 4.027
12 C 0.232 3.768
13 H -0.009 1.009
14 C -0.534 4.534
15 H 0.073 0.927
16 C 0.026 3.974
17 N -0.911 5.911
18 Si 0.957 3.043
19 H -0.277 1.277
20 H -0.285 1.285
21 H -0.265 1.265
22 N -0.495 5.495
23 H 0.082 0.918
24 H 0.066 0.934
25 H 0.103 0.897
26 H 0.258 0.742
27 H 0.054 0.946
28 H 0.112 0.888
29 H 0.081 0.919
30 H 0.032 0.968
31 H 0.126 0.874
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.065 0.935
35 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.927 9.852 0.377 16.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.161 4.161
3 C -0.144 4.144
4 O -0.102 6.102
5 C -0.017 4.017
6 C 0.047 3.953
7 N -0.271 5.271
8 C -0.072 4.072
9 C -0.201 4.201
10 S -0.110 6.110
11 C -0.176 4.176
12 C 0.124 3.876
13 H 0.008 0.992
14 C -0.573 4.573
15 H 0.091 0.909
16 C -0.175 4.175
17 N -0.549 5.549
18 Si 0.783 3.217
19 H -0.202 1.202
20 H -0.211 1.211
21 H -0.189 1.189
22 N -0.226 5.226
23 H 0.101 0.899
24 H 0.085 0.915
25 H 0.122 0.878
26 H 0.274 0.726
27 H 0.072 0.928
28 H 0.130 0.870
29 H 0.099 0.901
30 H 0.050 0.950
31 H 0.144 0.856
32 H 0.105 0.895
33 H 0.109 0.891
34 H 0.083 0.917
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -12.463 9.083 -0.709 15.438
hybrid contribution 0.525 0.032 1.683 1.763
sum -11.938 9.115 0.974 15.051
Atomic orbital electron populations
1.20197 0.84101 1.04289 1.03680 1.22545 0.99859 0.87886 1.05840
1.25646 0.79074 1.02495 1.07139 1.84514 1.32188 1.23822 1.69638
1.26164 0.95367 0.79367 1.00765 1.20255 0.88145 0.95337 0.91559
1.61369 1.32782 1.24259 1.08711 1.22241 1.00689 0.91388 0.92832
1.23384 0.96177 1.02501 0.98009 1.86493 1.36241 1.41741 1.46530
1.23542 1.04093 0.96429 0.93535 1.19116 0.83380 0.92565 0.92510
0.99187 1.21435 0.97627 1.21357 1.16891 0.90932 1.25680 0.94767
0.99526 0.97571 1.70072 1.00012 1.40414 1.44383 0.85547 0.77582
0.79642 0.78977 1.20236 1.21090 1.18886 1.70390 1.00980 1.32883
1.18394 0.89935 0.91488 0.87791 0.72591 0.92752 0.87041 0.90133
0.94964 0.85634 0.89531 0.89145 0.91663 0.92481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.10 10.43 71.23 0.74 -0.36 16
2 C -0.04 -1.07 7.11 41.26 0.29 -0.78 16
3 C -0.07 -1.65 12.08 66.93 0.81 -0.84 16
4 O -0.22 -6.54 9.73 -3.71 -0.04 -6.57 16
5 C 0.19 6.66 6.01 88.34 0.53 7.19 16
6 C 0.17 6.90 5.03 85.56 0.43 7.33 16
7 N -0.54 -22.88 4.46 -881.19 -3.93 -26.81 16
8 C 0.06 2.12 5.15 86.47 0.45 2.57 16
9 C -0.05 -1.77 6.69 72.07 0.48 -1.29 16
10 S -0.34 -13.88 22.40 -56.49 -1.27 -15.15 16
11 C -0.03 -1.30 5.81 72.06 0.42 -0.88 16
12 C 0.23 11.33 1.71 44.33 0.08 11.41 16
13 H -0.01 -0.52 7.86 -2.39 -0.02 -0.54 16
14 C -0.53 -27.42 7.76 25.60 0.20 -27.22 16
15 H 0.07 3.66 5.83 -2.91 -0.02 3.64 16
16 C 0.03 1.36 5.20 84.66 0.44 1.80 16
17 N -0.91 -50.36 12.11 21.45 0.26 -50.10 16
18 Si 0.96 41.62 29.55 68.60 2.03 43.65 16
19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
20 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16
21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16
22 N -0.49 -17.13 11.29 -291.99 -3.30 -20.43 16
23 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16
24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
26 H 0.26 2.79 8.06 -2.91 -0.02 2.76 16
27 H 0.05 2.20 8.08 -2.39 -0.02 2.18 16
28 H 0.11 4.63 6.23 -2.39 -0.01 4.61 16
29 H 0.08 2.73 5.24 -2.39 -0.01 2.72 16
30 H 0.03 1.25 7.92 -2.38 -0.02 1.23 16
31 H 0.13 3.44 8.14 -2.38 -0.02 3.42 16
32 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16
33 H 0.09 4.78 6.82 -2.39 -0.02 4.77 16
34 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16
35 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16
Total: -1.00 -61.95 297.01 -0.29 -62.24
By element:
Atomic # 1 Polarization: 13.14 SS G_CDS: 1.09 Total: 14.23 kcal
Atomic # 6 Polarization: -5.92 SS G_CDS: 4.87 Total: -1.06 kcal
Atomic # 7 Polarization: -90.37 SS G_CDS: -6.97 Total: -97.34 kcal
Atomic # 8 Polarization: -6.54 SS G_CDS: -0.04 Total: -6.57 kcal
Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal
Atomic # 16 Polarization: -13.88 SS G_CDS: -1.27 Total: -15.15 kcal
Total: -61.95 -0.29 -62.24 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260147640.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.144 kcal
(2) G-P(sol) polarization free energy of solvation -61.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds