Wall clock time and date at job start Mon Mar 30 2020 05:03:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.31780 * 122.74922 * 2 1
4 4 C 1.29022 * 117.12297 * 180.02562 * 3 2 1
5 5 S 1.70982 * 110.17095 * 359.72133 * 4 3 2
6 6 C 1.33644 * 122.74951 * 179.97438 * 2 1 3
7 7 C 1.50704 * 126.03479 * 0.02562 * 6 2 1
8 8 N 1.46899 * 109.46935 * 89.99975 * 7 6 2
9 9 C 1.47012 * 111.00352 * 46.36249 * 8 7 6
10 10 C 1.53094 * 109.25734 * 182.38989 * 9 8 7
11 11 O 1.43013 * 109.25956 * 303.15292 * 10 9 8
12 12 C 1.43022 * 113.78001 * 58.64849 * 11 10 9
13 13 C 1.47017 * 110.99470 * 169.99949 * 8 7 6
14 14 H 1.08998 * 109.50504 * 297.57834 * 13 8 7
15 15 C 1.50701 * 109.50914 * 57.67369 * 13 8 7
16 16 H 1.08002 * 119.99761 * 359.90492 * 15 13 8
17 17 C 1.37871 * 119.99694 * 180.19055 * 15 13 8
18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13
19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13
20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15
21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15
22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15
23 23 H 1.08999 * 109.46787 * 270.00476 * 1 2 3
24 24 H 1.08999 * 109.46959 * 30.00130 * 1 2 3
25 25 H 1.08996 * 109.47240 * 150.00602 * 1 2 3
26 26 H 1.08002 * 124.91762 * 180.02562 * 4 3 2
27 27 H 1.09001 * 109.47273 * 329.99531 * 7 6 2
28 28 H 1.09004 * 109.46661 * 209.99977 * 7 6 2
29 29 H 1.09002 * 109.50284 * 302.32381 * 9 8 7
30 30 H 1.08993 * 109.50646 * 62.45504 * 9 8 7
31 31 H 1.09005 * 109.50599 * 63.08653 * 10 9 8
32 32 H 1.09001 * 109.50740 * 183.17060 * 10 9 8
33 33 H 1.08996 * 109.54646 * 181.44371 * 12 11 10
34 34 H 1.08994 * 109.47237 * 61.30536 * 12 11 10
35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2199 1.1083 0.0000
4 6 3.5039 0.9818 -0.0005
5 16 3.9333 -0.6732 0.0067
6 6 2.2300 -1.1240 0.0005
7 6 1.6846 -2.5289 0.0006
8 7 1.5080 -2.9856 -1.3844
9 6 2.6938 -2.6765 -2.1965
10 6 2.4440 -3.1144 -3.6420
11 8 2.1210 -4.5074 -3.6638
12 6 0.9709 -4.8450 -2.8834
13 6 1.2055 -4.4236 -1.4303
14 1 2.0444 -4.9853 -1.0194
15 6 -0.0333 -4.7034 -0.6190
16 1 -0.5446 -3.8949 -0.1177
17 6 -0.5106 -5.9925 -0.5120
18 7 0.1119 -6.9770 -1.1225
19 14 -2.0417 -6.3405 0.4999
20 1 -3.2429 -6.2323 -0.3665
21 1 -1.9608 -7.7115 1.0647
22 1 -2.1388 -5.3543 1.6059
23 1 -0.3633 0.0001 1.0277
24 1 -0.3633 0.8900 -0.5139
25 1 -0.3633 -0.8900 -0.5137
26 1 4.2060 1.8026 -0.0002
27 1 0.7233 -2.5455 0.5141
28 1 2.3827 -3.1895 0.5148
29 1 2.8842 -1.6036 -2.1689
30 1 3.5567 -3.2103 -1.7984
31 1 1.6147 -2.5420 -4.0576
32 1 3.3411 -2.9388 -4.2358
33 1 0.8032 -5.9211 -2.9277
34 1 0.0987 -4.3235 -3.2773
35 1 -0.2237 -7.8839 -1.0469
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260152499.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:03:57
Heat of formation + Delta-G solvation = 8.189354 kcal
Electronic energy + Delta-G solvation = -18978.842772 eV
Core-core repulsion = 16103.988075 eV
Total energy + Delta-G solvation = -2874.854697 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.80251 -38.52806 -35.26586 -33.24330 -31.77409 -29.92675 -28.88254 -26.30839
-25.36135 -24.55398 -22.66364 -22.35117 -19.46337 -18.41183 -17.88015 -16.75268
-15.75400 -15.46306 -14.92251 -14.65080 -14.50718 -13.96180 -13.78293 -13.58828
-13.32255 -12.94359 -12.34749 -12.29498 -12.25886 -11.99588 -11.57809 -11.08143
-10.94279 -10.84745 -10.72545 -10.38871 -10.27245 -9.82843 -9.51769 -9.25346
-8.96648 -8.81701 -8.54154 -8.38382 -7.38664 -6.18884 -4.24150 0.87647
1.52256 1.91713 2.96314 3.23031 3.30368 3.32371 4.27961 4.37500
4.76040 4.89288 5.13577 5.20239 5.30495 5.39973 5.66113 5.78942
5.86697 5.88897 5.98135 6.06737 6.22802 6.25575 6.30675 6.41999
6.58288 6.62912 6.81102 7.17703 7.40721 7.60444 7.76807 7.87111
8.06425 8.09593 8.42995 8.82031 9.42059 10.89085
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.020591 B = 0.006891 C = 0.005718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1359.493862 B = 4062.436991 C = 4895.880372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.064 3.936
3 N -0.468 5.468
4 C 0.007 3.993
5 S 0.097 5.903
6 C -0.194 4.194
7 C 0.142 3.858
8 N -0.524 5.524
9 C 0.015 3.985
10 C 0.069 3.931
11 O -0.403 6.403
12 C 0.070 3.930
13 C 0.189 3.811
14 H 0.010 0.990
15 C -0.512 4.512
16 H 0.067 0.933
17 C 0.062 3.938
18 N -0.891 5.891
19 Si 0.901 3.099
20 H -0.279 1.279
21 H -0.286 1.286
22 H -0.273 1.273
23 H 0.070 0.930
24 H 0.069 0.931
25 H 0.090 0.910
26 H 0.194 0.806
27 H 0.104 0.896
28 H 0.041 0.959
29 H 0.067 0.933
30 H 0.030 0.970
31 H 0.047 0.953
32 H 0.079 0.921
33 H 0.124 0.876
34 H 0.035 0.965
35 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.430 11.045 1.167 12.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.067 4.067
3 N -0.182 5.182
4 C -0.292 4.292
5 S 0.350 5.650
6 C -0.315 4.315
7 C 0.012 3.988
8 N -0.250 5.250
9 C -0.114 4.114
10 C -0.008 4.008
11 O -0.323 6.323
12 C -0.006 4.006
13 C 0.082 3.918
14 H 0.028 0.972
15 C -0.551 4.551
16 H 0.085 0.915
17 C -0.140 4.140
18 N -0.530 5.530
19 Si 0.728 3.272
20 H -0.205 1.205
21 H -0.212 1.212
22 H -0.198 1.198
23 H 0.088 0.912
24 H 0.088 0.912
25 H 0.109 0.891
26 H 0.211 0.789
27 H 0.122 0.878
28 H 0.059 0.941
29 H 0.085 0.915
30 H 0.048 0.952
31 H 0.065 0.935
32 H 0.097 0.903
33 H 0.142 0.858
34 H 0.053 0.947
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 5.866 10.977 0.854 12.475
hybrid contribution -0.914 -0.331 1.052 1.433
sum 4.952 10.646 1.907 11.895
Atomic orbital electron populations
1.20392 0.86799 1.04000 1.02590 1.20233 0.98390 0.85826 1.02252
1.66183 1.04988 1.31918 1.15067 1.28150 0.95319 0.99877 1.05817
1.84075 1.08735 1.03600 1.68602 1.25999 0.93782 1.01636 1.10055
1.20440 1.00574 0.85703 0.92068 1.62500 1.33621 1.20817 1.08027
1.22839 0.92818 0.99993 0.95753 1.22413 0.99495 0.84277 0.94657
1.87910 1.50005 1.22775 1.71567 1.23138 0.84637 1.02959 0.89875
1.19929 0.96825 0.80634 0.94363 0.97217 1.21029 1.10126 0.93279
1.30624 0.91451 1.24979 0.97348 0.96029 0.95673 1.69837 1.39832
1.00325 1.42982 0.86445 0.82855 0.77589 0.80272 1.20453 1.21192
1.19775 0.91177 0.91234 0.89078 0.78929 0.87779 0.94122 0.91465
0.95203 0.93513 0.90292 0.85836 0.94694 0.92471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.14 9.82 36.01 0.35 -0.78 16
2 C 0.06 1.03 6.74 -84.22 -0.57 0.46 16
3 N -0.47 -7.18 10.53 -11.89 -0.13 -7.30 16
4 C 0.01 0.08 12.23 51.58 0.63 0.71 16
5 S 0.10 1.31 21.77 -107.50 -2.34 -1.03 16
6 C -0.19 -3.17 4.51 -35.92 -0.16 -3.33 16
7 C 0.14 2.67 4.66 -4.97 -0.02 2.65 16
8 N -0.52 -10.89 4.67 -229.16 -1.07 -11.96 16
9 C 0.02 0.28 4.82 -3.71 -0.02 0.27 16
10 C 0.07 1.30 7.01 37.21 0.26 1.56 16
11 O -0.40 -9.13 10.82 -35.23 -0.38 -9.51 16
12 C 0.07 1.71 6.03 37.21 0.22 1.93 16
13 C 0.19 4.61 1.93 -68.75 -0.13 4.47 16
14 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16
15 C -0.51 -13.12 8.03 -34.44 -0.28 -13.40 16
16 H 0.07 1.69 6.56 -52.49 -0.34 1.34 16
17 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16
18 N -0.89 -24.28 11.37 55.43 0.63 -23.65 16
19 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16
20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
25 H 0.09 1.43 7.35 -51.93 -0.38 1.05 16
26 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16
27 H 0.10 2.01 6.01 -51.93 -0.31 1.70 16
28 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16
29 H 0.07 1.16 5.83 -51.93 -0.30 0.85 16
30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.12 3.28 6.19 -51.93 -0.32 2.96 16
34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16
LS Contribution 294.48 15.07 4.44 4.44
Total: -1.00 -28.17 294.48 -8.27 -36.44
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -4.60 Total: 1.28 kcal
Atomic # 6 Polarization: -4.13 SS G_CDS: 0.20 Total: -3.93 kcal
Atomic # 7 Polarization: -42.34 SS G_CDS: -0.57 Total: -42.91 kcal
Atomic # 8 Polarization: -9.13 SS G_CDS: -0.38 Total: -9.51 kcal
Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal
Atomic # 16 Polarization: 1.31 SS G_CDS: -2.34 Total: -1.03 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -28.17 -8.27 -36.44 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260152499.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.630 kcal
(2) G-P(sol) polarization free energy of solvation -28.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds