Wall clock time and date at job start Mon Mar 30 2020 05:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31780 * 122.74922 * 2 1 4 4 C 1.29022 * 117.12297 * 180.02562 * 3 2 1 5 5 S 1.70982 * 110.17095 * 359.72133 * 4 3 2 6 6 C 1.33644 * 122.74951 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.03479 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.46935 * 89.99975 * 7 6 2 9 9 C 1.47012 * 111.00352 * 46.36249 * 8 7 6 10 10 C 1.53094 * 109.25734 * 182.38989 * 9 8 7 11 11 O 1.43013 * 109.25956 * 303.15292 * 10 9 8 12 12 C 1.43022 * 113.78001 * 58.64849 * 11 10 9 13 13 C 1.47017 * 110.99470 * 169.99949 * 8 7 6 14 14 H 1.08998 * 109.50504 * 297.57834 * 13 8 7 15 15 C 1.50701 * 109.50914 * 57.67369 * 13 8 7 16 16 H 1.08002 * 119.99761 * 359.90492 * 15 13 8 17 17 C 1.37871 * 119.99694 * 180.19055 * 15 13 8 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 H 1.08999 * 109.46787 * 270.00476 * 1 2 3 24 24 H 1.08999 * 109.46959 * 30.00130 * 1 2 3 25 25 H 1.08996 * 109.47240 * 150.00602 * 1 2 3 26 26 H 1.08002 * 124.91762 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47273 * 329.99531 * 7 6 2 28 28 H 1.09004 * 109.46661 * 209.99977 * 7 6 2 29 29 H 1.09002 * 109.50284 * 302.32381 * 9 8 7 30 30 H 1.08993 * 109.50646 * 62.45504 * 9 8 7 31 31 H 1.09005 * 109.50599 * 63.08653 * 10 9 8 32 32 H 1.09001 * 109.50740 * 183.17060 * 10 9 8 33 33 H 1.08996 * 109.54646 * 181.44371 * 12 11 10 34 34 H 1.08994 * 109.47237 * 61.30536 * 12 11 10 35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9818 -0.0005 5 16 3.9333 -0.6732 0.0067 6 6 2.2300 -1.1240 0.0005 7 6 1.6846 -2.5289 0.0006 8 7 1.5080 -2.9856 -1.3844 9 6 2.6938 -2.6765 -2.1965 10 6 2.4440 -3.1144 -3.6420 11 8 2.1210 -4.5074 -3.6638 12 6 0.9709 -4.8450 -2.8834 13 6 1.2055 -4.4236 -1.4303 14 1 2.0444 -4.9853 -1.0194 15 6 -0.0333 -4.7034 -0.6190 16 1 -0.5446 -3.8949 -0.1177 17 6 -0.5106 -5.9925 -0.5120 18 7 0.1119 -6.9770 -1.1225 19 14 -2.0417 -6.3405 0.4999 20 1 -3.2429 -6.2323 -0.3665 21 1 -1.9608 -7.7115 1.0647 22 1 -2.1388 -5.3543 1.6059 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 4.2060 1.8026 -0.0002 27 1 0.7233 -2.5455 0.5141 28 1 2.3827 -3.1895 0.5148 29 1 2.8842 -1.6036 -2.1689 30 1 3.5567 -3.2103 -1.7984 31 1 1.6147 -2.5420 -4.0576 32 1 3.3411 -2.9388 -4.2358 33 1 0.8032 -5.9211 -2.9277 34 1 0.0987 -4.3235 -3.2773 35 1 -0.2237 -7.8839 -1.0469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260152499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:57 Heat of formation + Delta-G solvation = 8.189354 kcal Electronic energy + Delta-G solvation = -18978.842772 eV Core-core repulsion = 16103.988075 eV Total energy + Delta-G solvation = -2874.854697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80251 -38.52806 -35.26586 -33.24330 -31.77409 -29.92675 -28.88254 -26.30839 -25.36135 -24.55398 -22.66364 -22.35117 -19.46337 -18.41183 -17.88015 -16.75268 -15.75400 -15.46306 -14.92251 -14.65080 -14.50718 -13.96180 -13.78293 -13.58828 -13.32255 -12.94359 -12.34749 -12.29498 -12.25886 -11.99588 -11.57809 -11.08143 -10.94279 -10.84745 -10.72545 -10.38871 -10.27245 -9.82843 -9.51769 -9.25346 -8.96648 -8.81701 -8.54154 -8.38382 -7.38664 -6.18884 -4.24150 0.87647 1.52256 1.91713 2.96314 3.23031 3.30368 3.32371 4.27961 4.37500 4.76040 4.89288 5.13577 5.20239 5.30495 5.39973 5.66113 5.78942 5.86697 5.88897 5.98135 6.06737 6.22802 6.25575 6.30675 6.41999 6.58288 6.62912 6.81102 7.17703 7.40721 7.60444 7.76807 7.87111 8.06425 8.09593 8.42995 8.82031 9.42059 10.89085 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.006891 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.493862 B = 4062.436991 C = 4895.880372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.468 5.468 4 C 0.007 3.993 5 S 0.097 5.903 6 C -0.194 4.194 7 C 0.142 3.858 8 N -0.524 5.524 9 C 0.015 3.985 10 C 0.069 3.931 11 O -0.403 6.403 12 C 0.070 3.930 13 C 0.189 3.811 14 H 0.010 0.990 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.901 3.099 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.194 0.806 27 H 0.104 0.896 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.035 0.965 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 11.045 1.167 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 N -0.182 5.182 4 C -0.292 4.292 5 S 0.350 5.650 6 C -0.315 4.315 7 C 0.012 3.988 8 N -0.250 5.250 9 C -0.114 4.114 10 C -0.008 4.008 11 O -0.323 6.323 12 C -0.006 4.006 13 C 0.082 3.918 14 H 0.028 0.972 15 C -0.551 4.551 16 H 0.085 0.915 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.211 0.789 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.866 10.977 0.854 12.475 hybrid contribution -0.914 -0.331 1.052 1.433 sum 4.952 10.646 1.907 11.895 Atomic orbital electron populations 1.20392 0.86799 1.04000 1.02590 1.20233 0.98390 0.85826 1.02252 1.66183 1.04988 1.31918 1.15067 1.28150 0.95319 0.99877 1.05817 1.84075 1.08735 1.03600 1.68602 1.25999 0.93782 1.01636 1.10055 1.20440 1.00574 0.85703 0.92068 1.62500 1.33621 1.20817 1.08027 1.22839 0.92818 0.99993 0.95753 1.22413 0.99495 0.84277 0.94657 1.87910 1.50005 1.22775 1.71567 1.23138 0.84637 1.02959 0.89875 1.19929 0.96825 0.80634 0.94363 0.97217 1.21029 1.10126 0.93279 1.30624 0.91451 1.24979 0.97348 0.96029 0.95673 1.69837 1.39832 1.00325 1.42982 0.86445 0.82855 0.77589 0.80272 1.20453 1.21192 1.19775 0.91177 0.91234 0.89078 0.78929 0.87779 0.94122 0.91465 0.95203 0.93513 0.90292 0.85836 0.94694 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.82 36.01 0.35 -0.78 16 2 C 0.06 1.03 6.74 -84.22 -0.57 0.46 16 3 N -0.47 -7.18 10.53 -11.89 -0.13 -7.30 16 4 C 0.01 0.08 12.23 51.58 0.63 0.71 16 5 S 0.10 1.31 21.77 -107.50 -2.34 -1.03 16 6 C -0.19 -3.17 4.51 -35.92 -0.16 -3.33 16 7 C 0.14 2.67 4.66 -4.97 -0.02 2.65 16 8 N -0.52 -10.89 4.67 -229.16 -1.07 -11.96 16 9 C 0.02 0.28 4.82 -3.71 -0.02 0.27 16 10 C 0.07 1.30 7.01 37.21 0.26 1.56 16 11 O -0.40 -9.13 10.82 -35.23 -0.38 -9.51 16 12 C 0.07 1.71 6.03 37.21 0.22 1.93 16 13 C 0.19 4.61 1.93 -68.75 -0.13 4.47 16 14 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 15 C -0.51 -13.12 8.03 -34.44 -0.28 -13.40 16 16 H 0.07 1.69 6.56 -52.49 -0.34 1.34 16 17 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 18 N -0.89 -24.28 11.37 55.43 0.63 -23.65 16 19 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.43 7.35 -51.93 -0.38 1.05 16 26 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.10 2.01 6.01 -51.93 -0.31 1.70 16 28 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.07 1.16 5.83 -51.93 -0.30 0.85 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.12 3.28 6.19 -51.93 -0.32 2.96 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 294.48 15.07 4.44 4.44 Total: -1.00 -28.17 294.48 -8.27 -36.44 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.60 Total: 1.28 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.20 Total: -3.93 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.57 Total: -42.91 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.38 Total: -9.51 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.34 Total: -1.03 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.17 -8.27 -36.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.630 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds