Wall clock time and date at job start Mon Mar 30 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20755 * 120.00116 * 2 1 4 4 C 1.50703 * 119.99966 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47246 * 320.00493 * 4 2 1 6 6 C 1.53011 * 109.46714 * 80.00162 * 4 2 1 7 7 C 1.50698 * 109.46616 * 184.99848 * 6 4 2 8 8 N 1.29028 * 124.91840 * 90.02688 * 7 6 4 9 9 C 1.31778 * 117.12804 * 179.97438 * 8 7 6 10 10 C 1.33641 * 114.49936 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.03435 * 179.97438 * 10 9 8 12 12 S 1.70975 * 124.91668 * 269.71818 * 7 6 4 13 13 N 1.46497 * 109.47388 * 199.99908 * 4 2 1 14 14 C 1.46505 * 120.00077 * 300.00724 * 13 4 2 15 15 C 1.36932 * 120.00079 * 119.99885 * 13 4 2 16 16 H 1.08003 * 120.00012 * 22.74710 * 15 13 4 17 17 C 1.38814 * 120.00037 * 202.74279 * 15 13 4 18 18 N 1.31612 * 120.00169 * 13.95950 * 17 15 13 19 19 Si 1.86806 * 119.99717 * 193.95882 * 17 15 13 20 20 H 1.48494 * 109.47035 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00104 * 19 17 15 22 22 H 1.48499 * 109.46913 * 240.00169 * 19 17 15 23 23 H 1.09009 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46994 * 299.99910 * 1 2 3 25 25 H 1.08997 * 109.47179 * 60.00528 * 1 2 3 26 26 H 1.09001 * 109.46957 * 65.00374 * 6 4 2 27 27 H 1.08991 * 109.47115 * 304.99727 * 6 4 2 28 28 H 1.07997 * 122.75002 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.46974 * 90.02198 * 11 10 9 30 30 H 1.09001 * 109.46979 * 210.01873 * 11 10 9 31 31 H 1.08997 * 109.47421 * 330.01993 * 11 10 9 32 32 H 1.08994 * 109.47320 * 95.22996 * 14 13 4 33 33 H 1.08996 * 109.47116 * 215.23816 * 14 13 4 34 34 H 1.09007 * 109.46763 * 335.23117 * 14 13 4 35 35 H 0.97004 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2985 -1.8726 -1.4199 7 6 2.9436 -3.2344 -1.3995 8 7 2.3127 -4.3481 -1.2371 9 6 3.0315 -5.4526 -1.2457 10 6 4.3417 -5.2599 -1.4249 11 6 5.3969 -6.3345 -1.4775 12 16 4.6165 -3.5278 -1.5958 13 7 3.6287 -1.0789 0.4728 14 6 4.5113 -0.1609 -0.2515 15 6 4.0826 -1.7254 1.5914 16 1 3.6127 -2.6433 1.9127 17 6 5.1468 -1.2012 2.3122 18 7 5.5417 0.0357 2.0970 19 14 6.0183 -2.2514 3.5879 20 1 5.3873 -3.5947 3.6379 21 1 7.4501 -2.3909 3.2196 22 1 5.9105 -1.6034 4.9197 23 1 -0.3634 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 2.8755 -1.2069 -2.0618 27 1 1.2823 -1.9577 -1.8045 28 1 2.5973 -6.4332 -1.1176 29 1 5.5236 -6.6691 -2.5072 30 1 6.3408 -5.9353 -1.1064 31 1 5.0894 -7.1763 -0.8572 32 1 4.4697 0.8246 0.2121 33 1 5.5339 -0.5364 -0.2160 34 1 4.1868 -0.0882 -1.2895 35 1 6.2851 0.4021 2.6010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260347045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:38 Heat of formation + Delta-G solvation = 30.635153 kcal Electronic energy + Delta-G solvation = -18862.041650 eV Core-core repulsion = 15988.160276 eV Total energy + Delta-G solvation = -2873.881374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.36299 -38.71339 -35.57844 -33.14945 -31.77092 -30.15324 -29.22857 -26.39728 -25.93612 -24.45686 -22.87095 -21.46329 -18.89762 -18.31268 -17.58766 -16.84815 -15.41995 -15.11080 -14.88566 -14.39196 -14.18816 -13.98159 -13.53789 -13.11620 -13.02649 -12.86780 -12.46107 -12.35397 -12.17983 -11.85194 -11.54070 -11.43110 -10.87086 -10.80019 -10.72472 -10.60215 -10.43457 -10.03117 -9.88392 -9.16266 -8.97021 -8.63816 -8.45650 -8.21018 -6.74125 -5.72594 -3.20226 1.20705 1.90149 2.36530 2.72280 3.30447 3.35802 3.43592 3.45496 4.43469 4.55461 4.83418 5.22165 5.36148 5.38487 5.43093 5.46408 5.57248 5.60875 5.66391 5.82684 5.89913 5.92696 6.04114 6.06320 6.16670 6.37273 6.50557 6.67350 6.84616 7.40639 7.78992 7.95402 8.23036 8.25094 8.43511 9.20020 9.81096 10.29641 11.30150 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.010400 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.693112 B = 2691.737082 C = 4191.103940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.332 3.668 3 O -0.441 6.441 4 C 0.135 3.865 5 H 0.094 0.906 6 C -0.055 4.055 7 C 0.076 3.924 8 N -0.490 5.490 9 C 0.031 3.969 10 C -0.257 4.257 11 C -0.069 4.069 12 S 0.175 5.825 13 N -0.575 5.575 14 C 0.168 3.832 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.290 1.290 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.038 0.962 34 H -0.006 1.006 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 -8.088 -8.765 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.203 3.797 3 O -0.312 6.312 4 C 0.023 3.977 5 H 0.112 0.888 6 C -0.099 4.099 7 C -0.200 4.200 8 N -0.204 5.204 9 C -0.121 4.121 10 C -0.379 4.379 11 C -0.128 4.128 12 S 0.432 5.568 13 N -0.295 5.295 14 C 0.024 3.976 15 C -0.386 4.386 16 H 0.084 0.916 17 C -0.189 4.189 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.217 1.217 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.180 0.820 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.907 -6.738 -8.777 11.734 hybrid contribution -0.020 -1.395 1.141 1.803 sum -3.927 -8.134 -7.635 11.827 Atomic orbital electron populations 1.22366 0.96533 1.03854 1.03632 1.25814 0.90882 0.92145 0.70885 1.90370 1.71654 1.34994 1.34170 1.20902 0.88904 0.94178 0.93745 0.88807 1.20699 1.00456 0.88663 1.00045 1.26501 0.94135 0.97806 1.01601 1.66234 1.38988 0.97406 1.17803 1.21449 0.89343 0.97538 1.03789 1.25969 0.99272 0.98735 1.13928 1.20113 0.95706 0.94944 1.02034 1.84127 1.10061 0.98597 1.64053 1.43933 1.05147 1.51033 1.29401 1.20810 0.92378 0.94767 0.89695 1.19138 1.14346 1.02360 1.02776 0.91566 1.25008 1.00654 0.95343 0.97901 1.70120 1.28519 1.12444 1.42648 0.86284 0.79678 0.79902 0.81337 1.20282 1.21463 1.21693 0.90450 0.89996 0.89993 0.89835 0.89258 0.81951 0.91332 0.91369 0.90924 0.93681 0.94320 0.98713 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.81 10.33 36.01 0.37 -2.44 16 2 C 0.33 6.32 6.48 -29.03 -0.19 6.13 16 3 O -0.44 -10.20 15.29 6.00 0.09 -10.11 16 4 C 0.14 2.69 2.34 -69.08 -0.16 2.53 16 5 H 0.09 1.89 7.86 -51.93 -0.41 1.48 16 6 C -0.06 -0.94 5.21 -27.88 -0.15 -1.08 16 7 C 0.08 1.37 6.37 -13.46 -0.09 1.28 16 8 N -0.49 -8.76 10.54 -11.87 -0.13 -8.88 16 9 C 0.03 0.50 11.25 -19.19 -0.22 0.28 16 10 C -0.26 -3.98 6.60 -35.92 -0.24 -4.21 16 11 C -0.07 -0.80 10.42 36.01 0.38 -0.43 16 12 S 0.17 3.07 23.18 -107.50 -2.49 0.57 16 13 N -0.57 -13.92 2.44 -174.80 -0.43 -14.35 16 14 C 0.17 4.15 7.32 59.85 0.44 4.59 16 15 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 17 C 0.01 0.29 5.08 -17.43 -0.09 0.21 16 18 N -0.89 -26.13 10.75 55.49 0.60 -25.53 16 19 Si 0.90 21.88 29.58 -169.99 -5.03 16.86 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H 0.08 0.90 8.00 -51.92 -0.42 0.49 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16 27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 1.27 6.64 -51.93 -0.34 0.93 16 33 H 0.04 1.01 7.36 -51.93 -0.38 0.63 16 34 H -0.01 -0.13 6.36 -51.93 -0.33 -0.46 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -31.99 309.84 -7.52 -39.50 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.72 Total: -2.57 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.05 Total: -48.76 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.49 Total: 0.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.99 -7.52 -39.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.140 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds