Wall clock time and date at job start Mon Mar 30 2020 04:56:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.20755 * 120.00116 * 2 1
4 4 C 1.50703 * 119.99966 * 179.97438 * 2 1 3
5 5 H 1.08998 * 109.47246 * 320.00493 * 4 2 1
6 6 C 1.53011 * 109.46714 * 80.00162 * 4 2 1
7 7 C 1.50698 * 109.46616 * 184.99848 * 6 4 2
8 8 N 1.29028 * 124.91840 * 90.02688 * 7 6 4
9 9 C 1.31778 * 117.12804 * 179.97438 * 8 7 6
10 10 C 1.33641 * 114.49936 * 0.02562 * 9 8 7
11 11 C 1.50701 * 126.03435 * 179.97438 * 10 9 8
12 12 S 1.70975 * 124.91668 * 269.71818 * 7 6 4
13 13 N 1.46497 * 109.47388 * 199.99908 * 4 2 1
14 14 C 1.46505 * 120.00077 * 300.00724 * 13 4 2
15 15 C 1.36932 * 120.00079 * 119.99885 * 13 4 2
16 16 H 1.08003 * 120.00012 * 22.74710 * 15 13 4
17 17 C 1.38814 * 120.00037 * 202.74279 * 15 13 4
18 18 N 1.31612 * 120.00169 * 13.95950 * 17 15 13
19 19 Si 1.86806 * 119.99717 * 193.95882 * 17 15 13
20 20 H 1.48494 * 109.47035 * 0.02562 * 19 17 15
21 21 H 1.48501 * 109.46948 * 120.00104 * 19 17 15
22 22 H 1.48499 * 109.46913 * 240.00169 * 19 17 15
23 23 H 1.09009 * 109.47062 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.46994 * 299.99910 * 1 2 3
25 25 H 1.08997 * 109.47179 * 60.00528 * 1 2 3
26 26 H 1.09001 * 109.46957 * 65.00374 * 6 4 2
27 27 H 1.08991 * 109.47115 * 304.99727 * 6 4 2
28 28 H 1.07997 * 122.75002 * 179.97438 * 9 8 7
29 29 H 1.09003 * 109.46974 * 90.02198 * 11 10 9
30 30 H 1.09001 * 109.46979 * 210.01873 * 11 10 9
31 31 H 1.08997 * 109.47421 * 330.01993 * 11 10 9
32 32 H 1.08994 * 109.47320 * 95.22996 * 14 13 4
33 33 H 1.08996 * 109.47116 * 215.23816 * 14 13 4
34 34 H 1.09007 * 109.46763 * 335.23117 * 14 13 4
35 35 H 0.97004 * 120.00067 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1108 1.0458 0.0000
4 6 2.2605 -1.3051 0.0006
5 1 1.7604 -2.0131 0.6614
6 6 2.2985 -1.8726 -1.4199
7 6 2.9436 -3.2344 -1.3995
8 7 2.3127 -4.3481 -1.2371
9 6 3.0315 -5.4526 -1.2457
10 6 4.3417 -5.2599 -1.4249
11 6 5.3969 -6.3345 -1.4775
12 16 4.6165 -3.5278 -1.5958
13 7 3.6287 -1.0789 0.4728
14 6 4.5113 -0.1609 -0.2515
15 6 4.0826 -1.7254 1.5914
16 1 3.6127 -2.6433 1.9127
17 6 5.1468 -1.2012 2.3122
18 7 5.5417 0.0357 2.0970
19 14 6.0183 -2.2514 3.5879
20 1 5.3873 -3.5947 3.6379
21 1 7.4501 -2.3909 3.2196
22 1 5.9105 -1.6034 4.9197
23 1 -0.3634 -1.0278 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5137 -0.8900
26 1 2.8755 -1.2069 -2.0618
27 1 1.2823 -1.9577 -1.8045
28 1 2.5973 -6.4332 -1.1176
29 1 5.5236 -6.6691 -2.5072
30 1 6.3408 -5.9353 -1.1064
31 1 5.0894 -7.1763 -0.8572
32 1 4.4697 0.8246 0.2121
33 1 5.5339 -0.5364 -0.2160
34 1 4.1868 -0.0882 -1.2895
35 1 6.2851 0.4021 2.6010
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260347045.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:38
Heat of formation + Delta-G solvation = 30.635153 kcal
Electronic energy + Delta-G solvation = -18862.041650 eV
Core-core repulsion = 15988.160276 eV
Total energy + Delta-G solvation = -2873.881374 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.36299 -38.71339 -35.57844 -33.14945 -31.77092 -30.15324 -29.22857 -26.39728
-25.93612 -24.45686 -22.87095 -21.46329 -18.89762 -18.31268 -17.58766 -16.84815
-15.41995 -15.11080 -14.88566 -14.39196 -14.18816 -13.98159 -13.53789 -13.11620
-13.02649 -12.86780 -12.46107 -12.35397 -12.17983 -11.85194 -11.54070 -11.43110
-10.87086 -10.80019 -10.72472 -10.60215 -10.43457 -10.03117 -9.88392 -9.16266
-8.97021 -8.63816 -8.45650 -8.21018 -6.74125 -5.72594 -3.20226 1.20705
1.90149 2.36530 2.72280 3.30447 3.35802 3.43592 3.45496 4.43469
4.55461 4.83418 5.22165 5.36148 5.38487 5.43093 5.46408 5.57248
5.60875 5.66391 5.82684 5.89913 5.92696 6.04114 6.06320 6.16670
6.37273 6.50557 6.67350 6.84616 7.40639 7.78992 7.95402 8.23036
8.25094 8.43511 9.20020 9.81096 10.29641 11.30150
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.013083 B = 0.010400 C = 0.006679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2139.693112 B = 2691.737082 C = 4191.103940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.332 3.668
3 O -0.441 6.441
4 C 0.135 3.865
5 H 0.094 0.906
6 C -0.055 4.055
7 C 0.076 3.924
8 N -0.490 5.490
9 C 0.031 3.969
10 C -0.257 4.257
11 C -0.069 4.069
12 S 0.175 5.825
13 N -0.575 5.575
14 C 0.168 3.832
15 C -0.257 4.257
16 H 0.067 0.933
17 C 0.011 3.989
18 N -0.894 5.894
19 Si 0.898 3.102
20 H -0.278 1.278
21 H -0.288 1.288
22 H -0.290 1.290
23 H 0.076 0.924
24 H 0.081 0.919
25 H 0.081 0.919
26 H 0.083 0.917
27 H 0.089 0.911
28 H 0.163 0.837
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.072 0.928
32 H 0.045 0.955
33 H 0.038 0.962
34 H -0.006 1.006
35 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.732 -8.088 -8.765 12.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.264 4.264
2 C 0.203 3.797
3 O -0.312 6.312
4 C 0.023 3.977
5 H 0.112 0.888
6 C -0.099 4.099
7 C -0.200 4.200
8 N -0.204 5.204
9 C -0.121 4.121
10 C -0.379 4.379
11 C -0.128 4.128
12 S 0.432 5.568
13 N -0.295 5.295
14 C 0.024 3.976
15 C -0.386 4.386
16 H 0.084 0.916
17 C -0.189 4.189
18 N -0.537 5.537
19 Si 0.728 3.272
20 H -0.203 1.203
21 H -0.215 1.215
22 H -0.217 1.217
23 H 0.096 0.904
24 H 0.100 0.900
25 H 0.100 0.900
26 H 0.102 0.898
27 H 0.107 0.893
28 H 0.180 0.820
29 H 0.087 0.913
30 H 0.086 0.914
31 H 0.091 0.909
32 H 0.063 0.937
33 H 0.057 0.943
34 H 0.013 0.987
35 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -3.907 -6.738 -8.777 11.734
hybrid contribution -0.020 -1.395 1.141 1.803
sum -3.927 -8.134 -7.635 11.827
Atomic orbital electron populations
1.22366 0.96533 1.03854 1.03632 1.25814 0.90882 0.92145 0.70885
1.90370 1.71654 1.34994 1.34170 1.20902 0.88904 0.94178 0.93745
0.88807 1.20699 1.00456 0.88663 1.00045 1.26501 0.94135 0.97806
1.01601 1.66234 1.38988 0.97406 1.17803 1.21449 0.89343 0.97538
1.03789 1.25969 0.99272 0.98735 1.13928 1.20113 0.95706 0.94944
1.02034 1.84127 1.10061 0.98597 1.64053 1.43933 1.05147 1.51033
1.29401 1.20810 0.92378 0.94767 0.89695 1.19138 1.14346 1.02360
1.02776 0.91566 1.25008 1.00654 0.95343 0.97901 1.70120 1.28519
1.12444 1.42648 0.86284 0.79678 0.79902 0.81337 1.20282 1.21463
1.21693 0.90450 0.89996 0.89993 0.89835 0.89258 0.81951 0.91332
0.91369 0.90924 0.93681 0.94320 0.98713 0.93721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -2.81 10.33 36.01 0.37 -2.44 16
2 C 0.33 6.32 6.48 -29.03 -0.19 6.13 16
3 O -0.44 -10.20 15.29 6.00 0.09 -10.11 16
4 C 0.14 2.69 2.34 -69.08 -0.16 2.53 16
5 H 0.09 1.89 7.86 -51.93 -0.41 1.48 16
6 C -0.06 -0.94 5.21 -27.88 -0.15 -1.08 16
7 C 0.08 1.37 6.37 -13.46 -0.09 1.28 16
8 N -0.49 -8.76 10.54 -11.87 -0.13 -8.88 16
9 C 0.03 0.50 11.25 -19.19 -0.22 0.28 16
10 C -0.26 -3.98 6.60 -35.92 -0.24 -4.21 16
11 C -0.07 -0.80 10.42 36.01 0.38 -0.43 16
12 S 0.17 3.07 23.18 -107.50 -2.49 0.57 16
13 N -0.57 -13.92 2.44 -174.80 -0.43 -14.35 16
14 C 0.17 4.15 7.32 59.85 0.44 4.59 16
15 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16
16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16
17 C 0.01 0.29 5.08 -17.43 -0.09 0.21 16
18 N -0.89 -26.13 10.75 55.49 0.60 -25.53 16
19 Si 0.90 21.88 29.58 -169.99 -5.03 16.86 16
20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16
22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
23 H 0.08 0.90 8.00 -51.92 -0.42 0.49 16
24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16
25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
26 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16
27 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16
28 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16
29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.04 1.27 6.64 -51.93 -0.34 0.93 16
33 H 0.04 1.01 7.36 -51.93 -0.38 0.63 16
34 H -0.01 -0.13 6.36 -51.93 -0.33 -0.46 16
35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
LS Contribution 309.84 15.07 4.67 4.67
Total: -1.00 -31.99 309.84 -7.52 -39.50
By element:
Atomic # 1 Polarization: 2.16 SS G_CDS: -4.72 Total: -2.57 kcal
Atomic # 6 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal
Atomic # 7 Polarization: -48.81 SS G_CDS: 0.05 Total: -48.76 kcal
Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal
Atomic # 16 Polarization: 3.07 SS G_CDS: -2.49 Total: 0.57 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -31.99 -7.52 -39.50 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260347045.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.140 kcal
(2) G-P(sol) polarization free energy of solvation -31.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds