Wall clock time and date at job start Mon Mar 30 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20755 * 120.00116 * 2 1 4 4 C 1.50703 * 119.99966 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47246 * 320.00493 * 4 2 1 6 6 C 1.53011 * 109.46714 * 80.00162 * 4 2 1 7 7 C 1.50698 * 109.46616 * 184.99848 * 6 4 2 8 8 N 1.29028 * 124.91840 * 90.02688 * 7 6 4 9 9 C 1.31778 * 117.12804 * 179.97438 * 8 7 6 10 10 C 1.33641 * 114.49936 * 0.02562 * 9 8 7 11 11 C 1.50701 * 126.03435 * 179.97438 * 10 9 8 12 12 S 1.70975 * 124.91668 * 269.71818 * 7 6 4 13 13 N 1.46497 * 109.47388 * 199.99908 * 4 2 1 14 14 C 1.46505 * 120.00077 * 300.00724 * 13 4 2 15 15 C 1.36932 * 120.00079 * 119.99885 * 13 4 2 16 16 H 1.08003 * 120.00012 * 22.74710 * 15 13 4 17 17 C 1.38814 * 120.00037 * 202.74279 * 15 13 4 18 18 N 1.31612 * 120.00169 * 13.95950 * 17 15 13 19 19 Si 1.86806 * 119.99717 * 193.95882 * 17 15 13 20 20 H 1.48494 * 109.47035 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00104 * 19 17 15 22 22 H 1.48499 * 109.46913 * 240.00169 * 19 17 15 23 23 H 1.09009 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46994 * 299.99910 * 1 2 3 25 25 H 1.08997 * 109.47179 * 60.00528 * 1 2 3 26 26 H 1.09001 * 109.46957 * 65.00374 * 6 4 2 27 27 H 1.08991 * 109.47115 * 304.99727 * 6 4 2 28 28 H 1.07997 * 122.75002 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.46974 * 90.02198 * 11 10 9 30 30 H 1.09001 * 109.46979 * 210.01873 * 11 10 9 31 31 H 1.08997 * 109.47421 * 330.01993 * 11 10 9 32 32 H 1.08994 * 109.47320 * 95.22996 * 14 13 4 33 33 H 1.08996 * 109.47116 * 215.23816 * 14 13 4 34 34 H 1.09007 * 109.46763 * 335.23117 * 14 13 4 35 35 H 0.97004 * 120.00067 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7604 -2.0131 0.6614 6 6 2.2985 -1.8726 -1.4199 7 6 2.9436 -3.2344 -1.3995 8 7 2.3127 -4.3481 -1.2371 9 6 3.0315 -5.4526 -1.2457 10 6 4.3417 -5.2599 -1.4249 11 6 5.3969 -6.3345 -1.4775 12 16 4.6165 -3.5278 -1.5958 13 7 3.6287 -1.0789 0.4728 14 6 4.5113 -0.1609 -0.2515 15 6 4.0826 -1.7254 1.5914 16 1 3.6127 -2.6433 1.9127 17 6 5.1468 -1.2012 2.3122 18 7 5.5417 0.0357 2.0970 19 14 6.0183 -2.2514 3.5879 20 1 5.3873 -3.5947 3.6379 21 1 7.4501 -2.3909 3.2196 22 1 5.9105 -1.6034 4.9197 23 1 -0.3634 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 2.8755 -1.2069 -2.0618 27 1 1.2823 -1.9577 -1.8045 28 1 2.5973 -6.4332 -1.1176 29 1 5.5236 -6.6691 -2.5072 30 1 6.3408 -5.9353 -1.1064 31 1 5.0894 -7.1763 -0.8572 32 1 4.4697 0.8246 0.2121 33 1 5.5339 -0.5364 -0.2160 34 1 4.1868 -0.0882 -1.2895 35 1 6.2851 0.4021 2.6010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260347045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:38 Heat of formation + Delta-G solvation = 10.707684 kcal Electronic energy + Delta-G solvation = -18862.905770 eV Core-core repulsion = 15988.160276 eV Total energy + Delta-G solvation = -2874.745494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79324 -40.18983 -37.35688 -34.75665 -33.20488 -31.83274 -30.54210 -28.01744 -27.72210 -25.84794 -24.35994 -23.15116 -20.25111 -19.80111 -19.02432 -18.70748 -17.18388 -16.75120 -16.27222 -15.98881 -15.68556 -15.37291 -15.10561 -14.63864 -14.40921 -14.23694 -13.81263 -13.65462 -13.51211 -13.18626 -12.96296 -12.89941 -12.76734 -12.55984 -12.43772 -12.37235 -11.94738 -11.85410 -11.84017 -10.81773 -10.51836 -10.32928 -9.94113 -9.51441 -8.71166 -7.81049 -5.30094 -0.08715 0.61903 1.06836 1.22158 1.41703 1.43418 1.52770 2.01545 2.46980 3.16429 3.35036 3.43234 3.70201 4.08250 4.16442 4.25637 4.38292 4.39783 4.54027 4.66306 4.70272 4.76192 4.80612 4.91158 4.96346 4.99408 5.12819 5.25162 5.32881 5.47550 5.64063 5.86347 6.28682 6.83472 6.91683 7.13437 7.83341 8.27552 9.20800 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.010400 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.693112 B = 2691.737082 C = 4191.103940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.333 3.667 3 O -0.489 6.489 4 C 0.128 3.872 5 H 0.094 0.906 6 C -0.046 4.046 7 C 0.061 3.939 8 N -0.496 5.496 9 C 0.015 3.985 10 C -0.242 4.242 11 C -0.070 4.070 12 S 0.127 5.873 13 N -0.587 5.587 14 C 0.195 3.805 15 C -0.247 4.247 16 H 0.063 0.937 17 C -0.044 4.044 18 N -0.930 5.930 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.295 1.295 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.194 0.806 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.004 0.996 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 -10.319 -9.387 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.208 3.792 3 O -0.364 6.364 4 C 0.017 3.983 5 H 0.111 0.889 6 C -0.088 4.088 7 C -0.216 4.216 8 N -0.211 5.211 9 C -0.136 4.136 10 C -0.364 4.364 11 C -0.129 4.129 12 S 0.382 5.618 13 N -0.308 5.308 14 C 0.051 3.949 15 C -0.377 4.377 16 H 0.081 0.919 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.222 1.222 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.211 0.789 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.023 0.977 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.598 -9.019 -9.417 14.190 hybrid contribution 0.403 -0.830 1.252 1.555 sum -5.195 -9.849 -8.165 13.808 Atomic orbital electron populations 1.22298 0.91448 1.06158 1.05143 1.26203 0.93574 0.90606 0.68840 1.90381 1.73221 1.36208 1.36549 1.21183 0.86829 0.95012 0.95272 0.88850 1.20581 1.02401 0.88128 0.97694 1.26593 0.93936 0.98247 1.02799 1.66245 1.39494 0.97844 1.17517 1.21955 0.89570 0.98213 1.03909 1.26406 1.00136 0.97760 1.12056 1.20290 0.94359 0.94276 1.04005 1.84321 1.10984 1.01502 1.64955 1.43935 1.07264 1.50773 1.28873 1.20336 0.91518 0.92608 0.90478 1.19283 1.13847 1.01970 1.02647 0.91909 1.25668 1.01872 0.96302 1.00170 1.70288 1.29183 1.14036 1.44151 0.85377 0.78491 0.78798 0.78891 1.19238 1.21629 1.22184 0.87829 0.89273 0.87402 0.90093 0.85880 0.78948 0.88998 0.91647 0.88792 0.97746 0.96793 0.96491 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.62 10.33 71.24 0.74 -3.88 16 2 C 0.33 12.25 6.48 29.10 0.19 12.44 16 3 O -0.49 -22.76 15.29 -1.43 -0.02 -22.79 16 4 C 0.13 4.95 2.34 44.25 0.10 5.05 16 5 H 0.09 3.62 7.86 -2.39 -0.02 3.61 16 6 C -0.05 -1.47 5.21 29.85 0.16 -1.31 16 7 C 0.06 2.10 6.37 88.52 0.56 2.66 16 8 N -0.50 -16.62 10.54 -191.45 -2.02 -18.63 16 9 C 0.01 0.42 11.25 83.66 0.94 1.36 16 10 C -0.24 -6.95 6.60 24.64 0.16 -6.79 16 11 C -0.07 -1.43 10.42 71.24 0.74 -0.69 16 12 S 0.13 4.37 23.18 -56.49 -1.31 3.06 16 13 N -0.59 -28.73 2.44 -706.95 -1.72 -30.45 16 14 C 0.20 10.01 7.32 127.77 0.93 10.94 16 15 C -0.25 -13.36 9.58 84.03 0.81 -12.55 16 16 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 17 C -0.04 -2.50 5.08 84.86 0.43 -2.07 16 18 N -0.93 -56.35 10.75 21.65 0.23 -56.11 16 19 Si 0.96 45.65 29.58 68.60 2.03 47.68 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H 0.10 1.95 8.00 -2.38 -0.02 1.93 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.64 6.49 -2.39 -0.02 2.62 16 27 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.00 0.25 6.64 -2.39 -0.02 0.23 16 33 H 0.01 0.74 7.36 -2.39 -0.02 0.72 16 34 H 0.02 0.76 6.36 -2.38 -0.02 0.75 16 35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -71.24 309.84 4.04 -67.20 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.09 Total: 4.87 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.76 Total: 5.18 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.51 Total: -105.20 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.02 Total: -22.79 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.31 Total: 3.06 kcal Total: -71.24 4.04 -67.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.911 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds