Wall clock time and date at job start Mon Mar 30 2020 04:56:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.20755 * 120.00116 * 2 1
4 4 C 1.50703 * 119.99966 * 179.97438 * 2 1 3
5 5 H 1.08998 * 109.47246 * 320.00493 * 4 2 1
6 6 C 1.53011 * 109.46714 * 80.00162 * 4 2 1
7 7 C 1.50698 * 109.46616 * 184.99848 * 6 4 2
8 8 N 1.29028 * 124.91840 * 90.02688 * 7 6 4
9 9 C 1.31778 * 117.12804 * 179.97438 * 8 7 6
10 10 C 1.33641 * 114.49936 * 0.02562 * 9 8 7
11 11 C 1.50701 * 126.03435 * 179.97438 * 10 9 8
12 12 S 1.70975 * 124.91668 * 269.71818 * 7 6 4
13 13 N 1.46497 * 109.47388 * 199.99908 * 4 2 1
14 14 C 1.46505 * 120.00077 * 300.00724 * 13 4 2
15 15 C 1.36932 * 120.00079 * 119.99885 * 13 4 2
16 16 H 1.08003 * 120.00012 * 22.74710 * 15 13 4
17 17 C 1.38814 * 120.00037 * 202.74279 * 15 13 4
18 18 N 1.31612 * 120.00169 * 13.95950 * 17 15 13
19 19 Si 1.86806 * 119.99717 * 193.95882 * 17 15 13
20 20 H 1.48494 * 109.47035 * 0.02562 * 19 17 15
21 21 H 1.48501 * 109.46948 * 120.00104 * 19 17 15
22 22 H 1.48499 * 109.46913 * 240.00169 * 19 17 15
23 23 H 1.09009 * 109.47062 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.46994 * 299.99910 * 1 2 3
25 25 H 1.08997 * 109.47179 * 60.00528 * 1 2 3
26 26 H 1.09001 * 109.46957 * 65.00374 * 6 4 2
27 27 H 1.08991 * 109.47115 * 304.99727 * 6 4 2
28 28 H 1.07997 * 122.75002 * 179.97438 * 9 8 7
29 29 H 1.09003 * 109.46974 * 90.02198 * 11 10 9
30 30 H 1.09001 * 109.46979 * 210.01873 * 11 10 9
31 31 H 1.08997 * 109.47421 * 330.01993 * 11 10 9
32 32 H 1.08994 * 109.47320 * 95.22996 * 14 13 4
33 33 H 1.08996 * 109.47116 * 215.23816 * 14 13 4
34 34 H 1.09007 * 109.46763 * 335.23117 * 14 13 4
35 35 H 0.97004 * 120.00067 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1108 1.0458 0.0000
4 6 2.2605 -1.3051 0.0006
5 1 1.7604 -2.0131 0.6614
6 6 2.2985 -1.8726 -1.4199
7 6 2.9436 -3.2344 -1.3995
8 7 2.3127 -4.3481 -1.2371
9 6 3.0315 -5.4526 -1.2457
10 6 4.3417 -5.2599 -1.4249
11 6 5.3969 -6.3345 -1.4775
12 16 4.6165 -3.5278 -1.5958
13 7 3.6287 -1.0789 0.4728
14 6 4.5113 -0.1609 -0.2515
15 6 4.0826 -1.7254 1.5914
16 1 3.6127 -2.6433 1.9127
17 6 5.1468 -1.2012 2.3122
18 7 5.5417 0.0357 2.0970
19 14 6.0183 -2.2514 3.5879
20 1 5.3873 -3.5947 3.6379
21 1 7.4501 -2.3909 3.2196
22 1 5.9105 -1.6034 4.9197
23 1 -0.3634 -1.0278 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5137 -0.8900
26 1 2.8755 -1.2069 -2.0618
27 1 1.2823 -1.9577 -1.8045
28 1 2.5973 -6.4332 -1.1176
29 1 5.5236 -6.6691 -2.5072
30 1 6.3408 -5.9353 -1.1064
31 1 5.0894 -7.1763 -0.8572
32 1 4.4697 0.8246 0.2121
33 1 5.5339 -0.5364 -0.2160
34 1 4.1868 -0.0882 -1.2895
35 1 6.2851 0.4021 2.6010
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260347045.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:38
Heat of formation + Delta-G solvation = 10.707684 kcal
Electronic energy + Delta-G solvation = -18862.905770 eV
Core-core repulsion = 15988.160276 eV
Total energy + Delta-G solvation = -2874.745494 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.79324 -40.18983 -37.35688 -34.75665 -33.20488 -31.83274 -30.54210 -28.01744
-27.72210 -25.84794 -24.35994 -23.15116 -20.25111 -19.80111 -19.02432 -18.70748
-17.18388 -16.75120 -16.27222 -15.98881 -15.68556 -15.37291 -15.10561 -14.63864
-14.40921 -14.23694 -13.81263 -13.65462 -13.51211 -13.18626 -12.96296 -12.89941
-12.76734 -12.55984 -12.43772 -12.37235 -11.94738 -11.85410 -11.84017 -10.81773
-10.51836 -10.32928 -9.94113 -9.51441 -8.71166 -7.81049 -5.30094 -0.08715
0.61903 1.06836 1.22158 1.41703 1.43418 1.52770 2.01545 2.46980
3.16429 3.35036 3.43234 3.70201 4.08250 4.16442 4.25637 4.38292
4.39783 4.54027 4.66306 4.70272 4.76192 4.80612 4.91158 4.96346
4.99408 5.12819 5.25162 5.32881 5.47550 5.64063 5.86347 6.28682
6.83472 6.91683 7.13437 7.83341 8.27552 9.20800
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.013083 B = 0.010400 C = 0.006679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2139.693112 B = 2691.737082 C = 4191.103940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.333 3.667
3 O -0.489 6.489
4 C 0.128 3.872
5 H 0.094 0.906
6 C -0.046 4.046
7 C 0.061 3.939
8 N -0.496 5.496
9 C 0.015 3.985
10 C -0.242 4.242
11 C -0.070 4.070
12 S 0.127 5.873
13 N -0.587 5.587
14 C 0.195 3.805
15 C -0.247 4.247
16 H 0.063 0.937
17 C -0.044 4.044
18 N -0.930 5.930
19 Si 0.956 3.044
20 H -0.268 1.268
21 H -0.290 1.290
22 H -0.295 1.295
23 H 0.103 0.897
24 H 0.089 0.911
25 H 0.108 0.892
26 H 0.081 0.919
27 H 0.123 0.877
28 H 0.194 0.806
29 H 0.092 0.908
30 H 0.065 0.935
31 H 0.093 0.907
32 H 0.004 0.996
33 H 0.013 0.987
34 H 0.017 0.983
35 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.365 -10.319 -9.387 15.333
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.250 4.250
2 C 0.208 3.792
3 O -0.364 6.364
4 C 0.017 3.983
5 H 0.111 0.889
6 C -0.088 4.088
7 C -0.216 4.216
8 N -0.211 5.211
9 C -0.136 4.136
10 C -0.364 4.364
11 C -0.129 4.129
12 S 0.382 5.618
13 N -0.308 5.308
14 C 0.051 3.949
15 C -0.377 4.377
16 H 0.081 0.919
17 C -0.240 4.240
18 N -0.577 5.577
19 Si 0.784 3.216
20 H -0.192 1.192
21 H -0.216 1.216
22 H -0.222 1.222
23 H 0.122 0.878
24 H 0.107 0.893
25 H 0.126 0.874
26 H 0.099 0.901
27 H 0.141 0.859
28 H 0.211 0.789
29 H 0.110 0.890
30 H 0.084 0.916
31 H 0.112 0.888
32 H 0.023 0.977
33 H 0.032 0.968
34 H 0.035 0.965
35 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -5.598 -9.019 -9.417 14.190
hybrid contribution 0.403 -0.830 1.252 1.555
sum -5.195 -9.849 -8.165 13.808
Atomic orbital electron populations
1.22298 0.91448 1.06158 1.05143 1.26203 0.93574 0.90606 0.68840
1.90381 1.73221 1.36208 1.36549 1.21183 0.86829 0.95012 0.95272
0.88850 1.20581 1.02401 0.88128 0.97694 1.26593 0.93936 0.98247
1.02799 1.66245 1.39494 0.97844 1.17517 1.21955 0.89570 0.98213
1.03909 1.26406 1.00136 0.97760 1.12056 1.20290 0.94359 0.94276
1.04005 1.84321 1.10984 1.01502 1.64955 1.43935 1.07264 1.50773
1.28873 1.20336 0.91518 0.92608 0.90478 1.19283 1.13847 1.01970
1.02647 0.91909 1.25668 1.01872 0.96302 1.00170 1.70288 1.29183
1.14036 1.44151 0.85377 0.78491 0.78798 0.78891 1.19238 1.21629
1.22184 0.87829 0.89273 0.87402 0.90093 0.85880 0.78948 0.88998
0.91647 0.88792 0.97746 0.96793 0.96491 0.94434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.62 10.33 71.24 0.74 -3.88 16
2 C 0.33 12.25 6.48 29.10 0.19 12.44 16
3 O -0.49 -22.76 15.29 -1.43 -0.02 -22.79 16
4 C 0.13 4.95 2.34 44.25 0.10 5.05 16
5 H 0.09 3.62 7.86 -2.39 -0.02 3.61 16
6 C -0.05 -1.47 5.21 29.85 0.16 -1.31 16
7 C 0.06 2.10 6.37 88.52 0.56 2.66 16
8 N -0.50 -16.62 10.54 -191.45 -2.02 -18.63 16
9 C 0.01 0.42 11.25 83.66 0.94 1.36 16
10 C -0.24 -6.95 6.60 24.64 0.16 -6.79 16
11 C -0.07 -1.43 10.42 71.24 0.74 -0.69 16
12 S 0.13 4.37 23.18 -56.49 -1.31 3.06 16
13 N -0.59 -28.73 2.44 -706.95 -1.72 -30.45 16
14 C 0.20 10.01 7.32 127.77 0.93 10.94 16
15 C -0.25 -13.36 9.58 84.03 0.81 -12.55 16
16 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16
17 C -0.04 -2.50 5.08 84.86 0.43 -2.07 16
18 N -0.93 -56.35 10.75 21.65 0.23 -56.11 16
19 Si 0.96 45.65 29.58 68.60 2.03 47.68 16
20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16
23 H 0.10 1.95 8.00 -2.38 -0.02 1.93 16
24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16
25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16
26 H 0.08 2.64 6.49 -2.39 -0.02 2.62 16
27 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16
28 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16
29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16
30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
32 H 0.00 0.25 6.64 -2.39 -0.02 0.23 16
33 H 0.01 0.74 7.36 -2.39 -0.02 0.72 16
34 H 0.02 0.76 6.36 -2.38 -0.02 0.75 16
35 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16
Total: -1.00 -71.24 309.84 4.04 -67.20
By element:
Atomic # 1 Polarization: 3.78 SS G_CDS: 1.09 Total: 4.87 kcal
Atomic # 6 Polarization: -0.59 SS G_CDS: 5.76 Total: 5.18 kcal
Atomic # 7 Polarization: -101.69 SS G_CDS: -3.51 Total: -105.20 kcal
Atomic # 8 Polarization: -22.76 SS G_CDS: -0.02 Total: -22.79 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal
Atomic # 16 Polarization: 4.37 SS G_CDS: -1.31 Total: 3.06 kcal
Total: -71.24 4.04 -67.20 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260347045.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.911 kcal
(2) G-P(sol) polarization free energy of solvation -71.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.708 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds