Wall clock time and date at job start Mon Mar 30 2020 04:46:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31293 * 1
3 3 Si 1.86805 * 119.99874 * 2 1
4 4 H 1.48497 * 109.47196 * 270.00216 * 3 2 1
5 5 H 1.48497 * 109.46979 * 30.00657 * 3 2 1
6 6 H 1.48498 * 109.46827 * 150.00198 * 3 2 1
7 7 C 1.38981 * 120.00185 * 180.02562 * 2 1 3
8 8 H 1.08007 * 120.00127 * 179.97438 * 7 2 1
9 9 N 1.37333 * 120.00087 * 359.97438 * 7 2 1
10 10 C 1.36563 * 126.09683 * 180.26192 * 9 7 2
11 11 C 1.35501 * 107.52734 * 180.14398 * 10 9 7
12 12 O 1.36185 * 126.05409 * 179.87614 * 11 10 9
13 13 C 1.42900 * 116.99900 * 179.71182 * 12 11 10
14 14 C 1.53003 * 109.46788 * 179.97438 * 13 12 11
15 15 H 1.08997 * 109.39024 * 305.20080 * 14 13 12
16 16 C 1.52578 * 109.39185 * 185.49685 * 14 13 12
17 17 C 1.52580 * 110.73001 * 169.17609 * 16 14 13
18 18 C 1.53098 * 109.95195 * 70.67751 * 17 16 14
19 19 S 1.81750 * 108.83911 * 296.97006 * 18 17 16
20 20 C 1.53099 * 109.38996 * 64.99953 * 14 13 12
21 21 C 1.40507 * 107.89408 * 359.61119 * 11 10 9
22 22 N 1.30951 * 108.41261 * 0.24054 * 21 11 10
23 23 H 0.96998 * 120.00226 * 359.97438 * 1 2 3
24 24 H 1.08005 * 126.23566 * 359.97438 * 10 9 7
25 25 H 1.08993 * 109.47230 * 299.99942 * 13 12 11
26 26 H 1.08995 * 109.47007 * 60.00399 * 13 12 11
27 27 H 1.09011 * 109.22391 * 289.50210 * 16 14 13
28 28 H 1.09006 * 109.22806 * 48.85268 * 16 14 13
29 29 H 1.08993 * 109.38805 * 310.52575 * 17 16 14
30 30 H 1.08996 * 109.38850 * 190.81903 * 17 16 14
31 31 H 1.09004 * 109.57110 * 177.17251 * 18 17 16
32 32 H 1.08998 * 109.68691 * 56.84665 * 18 17 16
33 33 H 1.08999 * 109.57778 * 302.98245 * 20 14 13
34 34 H 1.09002 * 109.57058 * 63.23645 * 20 14 13
35 35 H 1.08004 * 125.79358 * 180.26699 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3129 0.0000 0.0000
3 14 2.2469 1.6178 0.0000
4 1 2.4944 2.0465 -1.4000
5 1 1.4444 2.6526 0.7002
6 1 3.5445 1.4402 0.7000
7 6 2.0079 -1.2036 -0.0005
8 1 3.0879 -1.2036 -0.0010
9 7 1.3213 -2.3930 -0.0005
10 6 1.8747 -3.6414 0.0040
11 6 0.8588 -4.5381 -0.0010
12 8 0.9865 -5.8940 -0.0012
13 6 -0.2204 -6.6592 -0.0006
14 6 0.1215 -8.1505 -0.0016
15 1 0.7794 -8.3704 -0.8424
16 6 -1.1618 -8.9644 -0.1388
17 6 -0.8443 -10.4318 -0.4108
18 6 -0.2574 -11.0808 0.8455
19 16 1.3137 -10.2615 1.2500
20 6 0.8310 -8.5102 1.3065
21 6 -0.3497 -3.8214 0.0002
22 7 -0.0717 -2.5417 0.0006
23 1 -0.4850 0.8400 0.0004
24 1 2.9298 -3.8721 0.0079
25 1 -0.8018 -6.4200 0.8897
26 1 -0.8028 -6.4198 -0.8902
27 1 -1.7366 -8.8865 0.7841
28 1 -1.7529 -8.5662 -0.9636
29 1 -0.1227 -10.5010 -1.2247
30 1 -1.7585 -10.9533 -0.6941
31 1 -0.0797 -12.1402 0.6602
32 1 -0.9532 -10.9671 1.6768
33 1 1.7198 -7.8900 1.4224
34 1 0.1563 -8.3422 2.1460
35 1 -1.3399 -4.2526 0.0012
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260859667.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:34
Heat of formation + Delta-G solvation = 26.927674 kcal
Electronic energy + Delta-G solvation = -17792.387931 eV
Core-core repulsion = 14918.345788 eV
Total energy + Delta-G solvation = -2874.042143 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.64897 -38.09616 -36.28417 -33.40142 -32.19378 -30.26273 -28.06509 -27.47804
-25.81009 -24.81487 -22.24445 -20.88542 -20.01498 -19.56898 -17.79791 -16.84003
-15.85726 -15.62631 -15.31008 -15.01345 -14.39235 -14.11189 -13.90167 -13.59707
-13.33272 -13.07598 -13.04590 -12.71287 -12.14610 -11.69043 -11.58978 -11.52883
-11.25789 -11.09881 -10.91627 -10.76970 -10.57943 -10.47362 -10.31106 -9.70993
-9.28617 -8.78561 -8.13986 -7.76542 -6.74651 -6.55846 -4.23509 1.69812
2.45621 2.97107 3.06165 3.10954 3.58949 3.75144 4.00920 4.20032
4.46100 4.62862 4.68610 4.76944 4.88692 5.01895 5.09862 5.17259
5.33141 5.41818 5.54116 5.59099 5.70660 5.75702 5.83457 5.87670
6.02136 6.14891 6.24086 6.59858 6.80303 6.99769 7.29225 7.55760
7.96901 8.50732 8.75819 9.36970 9.60810 10.40915
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.057480 B = 0.003361 C = 0.003229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 487.008910 B = 8328.537042 C = 8669.763664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.776 5.776
2 C 0.045 3.955
3 Si 0.935 3.065
4 H -0.271 1.271
5 H -0.276 1.276
6 H -0.263 1.263
7 C -0.320 4.320
8 H 0.118 0.882
9 N -0.142 5.142
10 C -0.077 4.077
11 C -0.071 4.071
12 O -0.313 6.313
13 C 0.081 3.919
14 C -0.085 4.085
15 H 0.091 0.909
16 C -0.124 4.124
17 C -0.119 4.119
18 C -0.083 4.083
19 S -0.277 6.277
20 C -0.067 4.067
21 C -0.108 4.108
22 N -0.246 5.246
23 H 0.274 0.726
24 H 0.150 0.850
25 H 0.049 0.951
26 H 0.053 0.947
27 H 0.066 0.934
28 H 0.076 0.924
29 H 0.077 0.923
30 H 0.074 0.926
31 H 0.101 0.899
32 H 0.081 0.919
33 H 0.115 0.885
34 H 0.081 0.919
35 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.884 -15.659 0.443 15.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.403 5.403
2 C -0.171 4.171
3 Si 0.759 3.241
4 H -0.196 1.196
5 H -0.201 1.201
6 H -0.188 1.188
7 C -0.453 4.453
8 H 0.135 0.865
9 N 0.086 4.914
10 C -0.223 4.223
11 C -0.127 4.127
12 O -0.226 6.226
13 C 0.003 3.997
14 C -0.105 4.105
15 H 0.109 0.891
16 C -0.161 4.161
17 C -0.158 4.158
18 C -0.231 4.231
19 S -0.050 6.050
20 C -0.215 4.215
21 C -0.281 4.281
22 N -0.081 5.081
23 H 0.084 0.916
24 H 0.168 0.832
25 H 0.067 0.933
26 H 0.071 0.929
27 H 0.085 0.915
28 H 0.094 0.906
29 H 0.096 0.904
30 H 0.092 0.908
31 H 0.119 0.881
32 H 0.100 0.900
33 H 0.134 0.866
34 H 0.100 0.900
35 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -1.360 -14.973 0.646 15.048
hybrid contribution -0.767 0.439 -0.135 0.894
sum -2.126 -14.534 0.511 14.697
Atomic orbital electron populations
1.70204 1.06133 1.27897 1.36067 1.25623 0.95720 1.00226 0.95522
0.85815 0.79427 0.79878 0.78978 1.19588 1.20126 1.18752 1.19892
0.91732 0.80367 1.53281 0.86486 1.44492 1.03582 1.03316 1.40006
1.20937 0.97092 0.84434 1.19877 1.18184 0.93418 0.81719 1.19354
1.85761 1.29853 1.14573 1.92453 1.22384 0.87451 0.89163 1.00717
1.21326 0.97318 0.93795 0.98050 0.89067 1.21509 0.97051 0.94596
1.02965 1.21692 1.01581 0.95354 0.97152 1.23443 0.96742 1.02131
1.00790 1.86913 1.18093 1.06651 1.93311 1.23519 1.05066 0.92938
0.99966 1.23558 0.96790 0.92882 1.14857 1.78126 0.90749 1.14313
1.24905 0.91559 0.83220 0.93269 0.92928 0.91510 0.90563 0.90431
0.90780 0.88069 0.90011 0.86638 0.89992 0.83355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -21.54 11.82 55.49 0.66 -20.89 16
2 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16
3 Si 0.94 18.99 29.55 -169.99 -5.02 13.97 16
4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16
5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16
6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16
7 C -0.32 -8.60 10.25 -14.81 -0.15 -8.75 16
8 H 0.12 2.82 7.83 -52.48 -0.41 2.41 16
9 N -0.14 -3.96 3.74 -11.43 -0.04 -4.00 16
10 C -0.08 -1.92 11.49 -16.42 -0.19 -2.11 16
11 C -0.07 -1.69 6.97 -39.70 -0.28 -1.97 16
12 O -0.31 -6.32 9.71 -20.33 -0.20 -6.51 16
13 C 0.08 1.26 4.44 37.16 0.17 1.42 16
14 C -0.08 -1.04 2.27 -90.78 -0.21 -1.25 16
15 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16
16 C -0.12 -1.18 4.92 -27.16 -0.13 -1.31 16
17 C -0.12 -0.98 5.75 -26.90 -0.15 -1.13 16
18 C -0.08 -0.72 6.45 37.21 0.24 -0.48 16
19 S -0.28 -3.30 22.33 -107.50 -2.40 -5.70 16
20 C -0.07 -0.84 5.66 37.21 0.21 -0.63 16
21 C -0.11 -2.67 11.09 -17.07 -0.19 -2.86 16
22 N -0.25 -7.05 10.41 30.78 0.32 -6.72 16
23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16
24 H 0.15 3.31 8.06 -52.48 -0.42 2.89 16
25 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16
26 H 0.05 0.80 8.04 -51.93 -0.42 0.38 16
27 H 0.07 0.61 8.08 -51.92 -0.42 0.19 16
28 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16
29 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16
30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.12 1.65 7.75 -51.93 -0.40 1.25 16
34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
35 H 0.15 3.19 7.70 -52.48 -0.40 2.79 16
LS Contribution 304.24 15.07 4.58 4.58
Total: -1.00 -30.95 304.24 -7.86 -38.81
By element:
Atomic # 1 Polarization: 9.44 SS G_CDS: -4.98 Total: 4.46 kcal
Atomic # 6 Polarization: -17.22 SS G_CDS: -0.78 Total: -18.00 kcal
Atomic # 7 Polarization: -32.54 SS G_CDS: 0.93 Total: -31.61 kcal
Atomic # 8 Polarization: -6.32 SS G_CDS: -0.20 Total: -6.51 kcal
Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal
Atomic # 16 Polarization: -3.30 SS G_CDS: -2.40 Total: -5.70 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -30.95 -7.86 -38.81 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260859667.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.741 kcal
(2) G-P(sol) polarization free energy of solvation -30.951 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds