Wall clock time and date at job start Mon Mar 30 2020 04:46:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31293 * 1
3 3 Si 1.86805 * 119.99874 * 2 1
4 4 H 1.48497 * 109.47196 * 270.00216 * 3 2 1
5 5 H 1.48497 * 109.46979 * 30.00657 * 3 2 1
6 6 H 1.48498 * 109.46827 * 150.00198 * 3 2 1
7 7 C 1.38981 * 120.00185 * 180.02562 * 2 1 3
8 8 H 1.08007 * 120.00127 * 179.97438 * 7 2 1
9 9 N 1.37333 * 120.00087 * 359.97438 * 7 2 1
10 10 C 1.36563 * 126.09683 * 180.26192 * 9 7 2
11 11 C 1.35501 * 107.52734 * 180.14398 * 10 9 7
12 12 O 1.36185 * 126.05409 * 179.87614 * 11 10 9
13 13 C 1.42900 * 116.99900 * 179.71182 * 12 11 10
14 14 C 1.53003 * 109.46788 * 179.97438 * 13 12 11
15 15 H 1.08997 * 109.39024 * 305.20080 * 14 13 12
16 16 C 1.52578 * 109.39185 * 185.49685 * 14 13 12
17 17 C 1.52580 * 110.73001 * 169.17609 * 16 14 13
18 18 C 1.53098 * 109.95195 * 70.67751 * 17 16 14
19 19 S 1.81750 * 108.83911 * 296.97006 * 18 17 16
20 20 C 1.53099 * 109.38996 * 64.99953 * 14 13 12
21 21 C 1.40507 * 107.89408 * 359.61119 * 11 10 9
22 22 N 1.30951 * 108.41261 * 0.24054 * 21 11 10
23 23 H 0.96998 * 120.00226 * 359.97438 * 1 2 3
24 24 H 1.08005 * 126.23566 * 359.97438 * 10 9 7
25 25 H 1.08993 * 109.47230 * 299.99942 * 13 12 11
26 26 H 1.08995 * 109.47007 * 60.00399 * 13 12 11
27 27 H 1.09011 * 109.22391 * 289.50210 * 16 14 13
28 28 H 1.09006 * 109.22806 * 48.85268 * 16 14 13
29 29 H 1.08993 * 109.38805 * 310.52575 * 17 16 14
30 30 H 1.08996 * 109.38850 * 190.81903 * 17 16 14
31 31 H 1.09004 * 109.57110 * 177.17251 * 18 17 16
32 32 H 1.08998 * 109.68691 * 56.84665 * 18 17 16
33 33 H 1.08999 * 109.57778 * 302.98245 * 20 14 13
34 34 H 1.09002 * 109.57058 * 63.23645 * 20 14 13
35 35 H 1.08004 * 125.79358 * 180.26699 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3129 0.0000 0.0000
3 14 2.2469 1.6178 0.0000
4 1 2.4944 2.0465 -1.4000
5 1 1.4444 2.6526 0.7002
6 1 3.5445 1.4402 0.7000
7 6 2.0079 -1.2036 -0.0005
8 1 3.0879 -1.2036 -0.0010
9 7 1.3213 -2.3930 -0.0005
10 6 1.8747 -3.6414 0.0040
11 6 0.8588 -4.5381 -0.0010
12 8 0.9865 -5.8940 -0.0012
13 6 -0.2204 -6.6592 -0.0006
14 6 0.1215 -8.1505 -0.0016
15 1 0.7794 -8.3704 -0.8424
16 6 -1.1618 -8.9644 -0.1388
17 6 -0.8443 -10.4318 -0.4108
18 6 -0.2574 -11.0808 0.8455
19 16 1.3137 -10.2615 1.2500
20 6 0.8310 -8.5102 1.3065
21 6 -0.3497 -3.8214 0.0002
22 7 -0.0717 -2.5417 0.0006
23 1 -0.4850 0.8400 0.0004
24 1 2.9298 -3.8721 0.0079
25 1 -0.8018 -6.4200 0.8897
26 1 -0.8028 -6.4198 -0.8902
27 1 -1.7366 -8.8865 0.7841
28 1 -1.7529 -8.5662 -0.9636
29 1 -0.1227 -10.5010 -1.2247
30 1 -1.7585 -10.9533 -0.6941
31 1 -0.0797 -12.1402 0.6602
32 1 -0.9532 -10.9671 1.6768
33 1 1.7198 -7.8900 1.4224
34 1 0.1563 -8.3422 2.1460
35 1 -1.3399 -4.2526 0.0012
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260859667.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:34
Heat of formation + Delta-G solvation = 9.162746 kcal
Electronic energy + Delta-G solvation = -17793.158276 eV
Core-core repulsion = 14918.345788 eV
Total energy + Delta-G solvation = -2874.812488 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.54985 -39.40366 -37.52230 -35.30984 -33.15365 -32.25767 -29.86853 -28.39057
-27.11441 -26.67985 -23.25340 -22.48794 -21.41936 -21.17682 -19.63848 -17.82826
-17.65853 -17.13469 -16.76206 -16.02816 -15.80528 -15.51051 -15.26221 -14.96666
-14.87915 -14.33411 -14.22382 -13.77947 -13.54821 -13.33831 -12.91545 -12.82062
-12.70463 -12.35614 -12.31019 -12.08251 -11.96659 -11.67835 -11.40189 -11.14230
-10.77304 -10.57876 -10.16334 -8.70354 -8.65244 -8.48502 -6.25622 0.81846
1.28833 1.40261 1.57690 1.59383 1.74461 2.08386 2.27380 2.48939
2.93307 3.06292 3.58419 3.81349 3.87435 3.94860 4.16746 4.24505
4.29840 4.41854 4.55640 4.56458 4.63116 4.71972 4.78428 4.84592
4.88925 5.03188 5.05677 5.12326 5.14470 5.33506 5.38304 5.70525
6.03333 6.62621 6.95436 7.41252 7.61436 8.51387
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.057480 B = 0.003361 C = 0.003229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 487.008910 B = 8328.537042 C = 8669.763664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C -0.004 4.004
3 Si 1.019 2.981
4 H -0.263 1.263
5 H -0.273 1.273
6 H -0.248 1.248
7 C -0.355 4.355
8 H 0.135 0.865
9 N -0.165 5.165
10 C -0.093 4.093
11 C -0.060 4.060
12 O -0.319 6.319
13 C 0.074 3.926
14 C -0.074 4.074
15 H 0.081 0.919
16 C -0.120 4.120
17 C -0.115 4.115
18 C -0.072 4.072
19 S -0.315 6.315
20 C -0.062 4.062
21 C -0.112 4.112
22 N -0.294 5.294
23 H 0.278 0.722
24 H 0.172 0.828
25 H 0.054 0.946
26 H 0.058 0.942
27 H 0.075 0.925
28 H 0.085 0.915
29 H 0.071 0.929
30 H 0.102 0.898
31 H 0.118 0.882
32 H 0.093 0.907
33 H 0.091 0.909
34 H 0.087 0.913
35 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.099 -16.705 0.300 16.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.451 5.451
2 C -0.215 4.215
3 Si 0.838 3.162
4 H -0.188 1.188
5 H -0.198 1.198
6 H -0.171 1.171
7 C -0.486 4.486
8 H 0.152 0.848
9 N 0.062 4.938
10 C -0.240 4.240
11 C -0.116 4.116
12 O -0.233 6.233
13 C -0.003 4.003
14 C -0.095 4.095
15 H 0.100 0.900
16 C -0.158 4.158
17 C -0.153 4.153
18 C -0.219 4.219
19 S -0.088 6.088
20 C -0.210 4.210
21 C -0.285 4.285
22 N -0.129 5.129
23 H 0.088 0.912
24 H 0.189 0.811
25 H 0.072 0.928
26 H 0.076 0.924
27 H 0.093 0.907
28 H 0.103 0.897
29 H 0.090 0.910
30 H 0.120 0.880
31 H 0.137 0.863
32 H 0.111 0.889
33 H 0.109 0.891
34 H 0.106 0.894
35 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -1.570 -16.056 0.504 16.141
hybrid contribution -0.747 0.555 -0.092 0.935
sum -2.317 -15.501 0.411 15.679
Atomic orbital electron populations
1.70354 1.08210 1.29181 1.37389 1.26817 0.96568 1.04024 0.94108
0.84594 0.78244 0.74093 0.79297 1.18813 1.19802 1.17139 1.20581
0.92898 0.80902 1.54245 0.84753 1.44762 1.03538 1.04339 1.41156
1.21494 0.98588 0.84234 1.19657 1.18254 0.92636 0.83237 1.17505
1.85782 1.32553 1.12809 1.92147 1.22728 0.86078 0.90369 1.01129
1.21292 0.98790 0.91861 0.97512 0.90028 1.21521 0.95371 0.95070
1.03838 1.21679 1.02623 0.94410 0.96616 1.23570 0.94464 1.02480
1.01427 1.87049 1.21517 1.06548 1.93638 1.23387 1.04130 0.93187
1.00319 1.24005 0.98389 0.92196 1.13912 1.78020 0.91874 1.16319
1.26705 0.91243 0.81079 0.92805 0.92385 0.90662 0.89658 0.90989
0.88018 0.86334 0.88863 0.89052 0.89438 0.80721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -46.73 11.82 21.66 0.26 -46.47 16
2 C 0.00 -0.19 5.50 84.95 0.47 0.28 16
3 Si 1.02 38.75 29.55 68.60 2.03 40.78 16
4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16
5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16
6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16
7 C -0.36 -19.31 10.25 84.01 0.86 -18.45 16
8 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16
9 N -0.17 -9.39 3.74 -190.08 -0.71 -10.10 16
10 C -0.09 -4.72 11.49 83.32 0.96 -3.77 16
11 C -0.06 -2.88 6.97 22.19 0.15 -2.73 16
12 O -0.32 -12.79 9.71 -95.65 -0.93 -13.72 16
13 C 0.07 2.23 4.44 71.98 0.32 2.55 16
14 C -0.07 -1.74 2.27 -10.90 -0.02 -1.76 16
15 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16
16 C -0.12 -1.98 4.92 30.31 0.15 -1.83 16
17 C -0.11 -1.51 5.75 30.49 0.18 -1.34 16
18 C -0.07 -1.04 6.45 72.01 0.46 -0.57 16
19 S -0.31 -7.16 22.33 -56.49 -1.26 -8.42 16
20 C -0.06 -1.52 5.66 72.02 0.41 -1.12 16
21 C -0.11 -5.58 11.09 85.38 0.95 -4.64 16
22 N -0.29 -17.21 10.41 -56.54 -0.59 -17.80 16
23 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16
24 H 0.17 7.59 8.06 -2.91 -0.02 7.57 16
25 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16
26 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16
27 H 0.07 1.14 8.08 -2.38 -0.02 1.12 16
28 H 0.08 1.28 8.04 -2.38 -0.02 1.26 16
29 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16
30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
33 H 0.09 2.66 7.75 -2.39 -0.02 2.64 16
34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16
35 H 0.18 7.43 7.70 -2.91 -0.02 7.40 16
Total: -1.00 -68.44 304.24 4.74 -63.70
By element:
Atomic # 1 Polarization: 24.34 SS G_CDS: 1.07 Total: 25.41 kcal
Atomic # 6 Polarization: -38.25 SS G_CDS: 4.88 Total: -33.37 kcal
Atomic # 7 Polarization: -73.33 SS G_CDS: -1.04 Total: -74.38 kcal
Atomic # 8 Polarization: -12.79 SS G_CDS: -0.93 Total: -13.72 kcal
Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal
Atomic # 16 Polarization: -7.16 SS G_CDS: -1.26 Total: -8.42 kcal
Total: -68.44 4.74 -63.70 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260859667.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.863 kcal
(2) G-P(sol) polarization free energy of solvation -68.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds