Wall clock time and date at job start Mon Mar 30 2020 05:28:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35749 * 117.00191 * 2 1
4 4 C 1.35837 * 126.12941 * 179.74171 * 3 2 1
5 5 C 1.40396 * 107.78579 * 180.12296 * 4 3 2
6 6 N 1.39919 * 125.93720 * 179.82925 * 5 4 3
7 7 C 1.34777 * 119.99938 * 359.72188 * 6 5 4
8 8 O 1.21473 * 119.99885 * 359.97438 * 7 6 5
9 9 C 1.48733 * 119.99707 * 179.72143 * 7 6 5
10 10 O 1.21513 * 119.99918 * 0.27663 * 9 7 6
11 11 N 1.34774 * 120.00086 * 180.27230 * 9 7 6
12 12 C 1.36119 * 120.00287 * 179.97438 * 11 9 7
13 13 H 1.08003 * 120.00015 * 0.02562 * 12 11 9
14 14 C 1.39578 * 120.00249 * 180.02562 * 12 11 9
15 15 N 1.31020 * 120.00301 * 180.02562 * 14 12 11
16 16 Si 1.86806 * 119.99945 * 0.02562 * 14 12 11
17 17 H 1.48505 * 109.47028 * 89.99954 * 16 14 12
18 18 H 1.48498 * 109.47194 * 209.99936 * 16 14 12
19 19 H 1.48504 * 109.47075 * 330.00125 * 16 14 12
20 20 N 1.31275 * 108.12356 * 359.57160 * 5 4 3
21 21 N 1.35189 * 126.12557 * 359.38819 * 3 2 1
22 22 C 1.46499 * 125.97450 * 0.06767 * 21 3 2
23 23 H 1.09000 * 109.47265 * 51.82856 * 1 2 3
24 24 H 1.09007 * 109.47236 * 171.82424 * 1 2 3
25 25 H 1.08998 * 109.47328 * 291.82463 * 1 2 3
26 26 H 1.08002 * 126.10787 * 359.97438 * 4 3 2
27 27 H 0.96998 * 119.99885 * 179.71496 * 6 5 4
28 28 H 0.97008 * 119.99772 * 0.02562 * 11 9 7
29 29 H 0.97001 * 119.99850 * 180.02562 * 15 14 12
30 30 H 1.09007 * 109.46798 * 277.03155 * 22 21 3
31 31 H 1.08999 * 109.47163 * 37.03288 * 22 21 3
32 32 H 1.08992 * 109.47321 * 157.03596 * 22 21 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2095 0.0000
4 6 3.3865 1.4250 0.0049
5 6 3.5978 2.8130 0.0058
6 7 4.8414 3.4542 0.0138
7 6 5.9752 2.7257 0.0273
8 8 5.9175 1.5124 0.0329
9 6 7.2971 3.4074 0.0295
10 8 7.3548 4.6211 0.0243
11 7 8.4310 2.6789 0.0374
12 6 9.6408 3.3028 0.0389
13 1 9.6921 4.3816 0.0342
14 6 10.8151 2.5483 0.0466
15 7 11.9796 3.1488 0.0485
16 14 10.7264 0.6824 0.0540
17 1 10.7083 0.1821 -1.3442
18 1 11.9113 0.1333 0.7608
19 1 9.4890 0.2484 0.7511
20 7 2.4260 3.4045 -0.0078
21 7 1.4343 2.4154 -0.0117
22 6 -0.0122 2.6471 -0.0251
23 1 -0.3634 0.6351 -0.8079
24 1 -0.3634 -1.0173 -0.1462
25 1 -0.3634 0.3820 0.9540
26 1 4.1533 0.6645 0.0100
27 1 4.8874 4.4231 0.0096
28 1 8.3849 1.7100 0.0413
29 1 12.7956 2.6244 0.0535
30 1 -0.3822 2.5749 -1.0480
31 1 -0.5059 1.8979 0.5937
32 1 -0.2246 3.6410 0.3686
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000302267845.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:49
Heat of formation + Delta-G solvation = 9.673334 kcal
Electronic energy + Delta-G solvation = -19815.615696 eV
Core-core repulsion = 16394.532135 eV
Total energy + Delta-G solvation = -3421.083561 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.100 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.66682 -39.85196 -38.42679 -37.40961 -35.03267 -34.12534 -32.65505 -31.94270
-29.86791 -27.79264 -26.57883 -25.72587 -23.41907 -21.74170 -20.65015 -19.46312
-19.03788 -18.16228 -16.86133 -16.78547 -16.37148 -15.46130 -15.32920 -15.22498
-14.99071 -14.58359 -14.55533 -13.89188 -13.58273 -13.51995 -12.99826 -12.92671
-12.85909 -12.48319 -11.78044 -11.64354 -11.31184 -10.75852 -10.64300 -10.48932
-10.36726 -10.13563 -9.82343 -8.51950 -8.48184 -8.35369 -8.22677 -6.64843
-4.05457 1.63741 2.04821 2.15816 2.69621 2.96254 3.05544 3.08887
3.10872 3.19246 3.91673 4.10122 4.22966 4.47970 4.57530 4.68371
4.78828 4.89677 5.06814 5.13927 5.30778 5.38075 5.53723 5.74228
6.04059 6.33249 6.92224 7.13447 7.22550 7.32057 7.78667 7.91208
8.14003 8.38945 8.66010 9.11629 9.53329 10.44449
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.037612 B = 0.004097 C = 0.003705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 744.272958 B = 6832.721063 C = 7556.526774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 O -0.289 6.289
3 C 0.277 3.723
4 C -0.283 4.283
5 C 0.334 3.666
6 N -0.616 5.616
7 C 0.523 3.477
8 O -0.520 6.520
9 C 0.405 3.595
10 O -0.575 6.575
11 N -0.518 5.518
12 C -0.306 4.306
13 H 0.130 0.870
14 C 0.054 3.946
15 N -0.843 5.843
16 Si 0.876 3.124
17 H -0.263 1.263
18 H -0.270 1.270
19 H -0.258 1.258
20 N -0.320 5.320
21 N -0.402 5.402
22 C 0.086 3.914
23 H 0.063 0.937
24 H 0.106 0.894
25 H 0.061 0.939
26 H 0.181 0.819
27 H 0.428 0.572
28 H 0.385 0.615
29 H 0.283 0.717
30 H 0.072 0.928
31 H 0.091 0.909
32 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.093 -6.437 -0.045 23.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 O -0.195 6.195
3 C 0.110 3.890
4 C -0.313 4.313
5 C 0.078 3.922
6 N -0.266 5.266
7 C 0.308 3.692
8 O -0.394 6.394
9 C 0.189 3.811
10 O -0.461 6.461
11 N -0.155 5.155
12 C -0.435 4.435
13 H 0.147 0.853
14 C -0.156 4.156
15 N -0.480 5.480
16 Si 0.701 3.299
17 H -0.187 1.187
18 H -0.194 1.194
19 H -0.182 1.182
20 N -0.154 5.154
21 N -0.199 5.199
22 C -0.055 4.055
23 H 0.081 0.919
24 H 0.124 0.876
25 H 0.080 0.920
26 H 0.198 0.802
27 H 0.267 0.733
28 H 0.220 0.780
29 H 0.094 0.906
30 H 0.091 0.909
31 H 0.109 0.891
32 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -22.443 -5.743 -0.055 23.166
hybrid contribution 0.094 -1.542 0.007 1.545
sum -22.349 -7.284 -0.048 23.506
Atomic orbital electron populations
1.23616 0.78443 1.05018 1.01328 1.86298 1.21208 1.22070 1.89926
1.19581 0.91019 0.78811 0.99614 1.20858 0.92221 0.95942 1.22269
1.18763 0.85989 0.90627 0.96811 1.42382 1.00917 1.11786 1.71518
1.20856 0.85617 0.86986 0.75753 1.90626 1.87288 1.13964 1.47480
1.18367 0.83369 0.87543 0.91774 1.90657 1.85872 1.12485 1.57113
1.41796 1.05572 1.08871 1.59282 1.19604 0.79983 0.96202 1.47752
0.85256 1.25261 0.94697 0.99609 0.95987 1.69442 0.97801 1.37257
1.43455 0.86665 0.79468 0.83886 0.79932 1.18743 1.19433 1.18243
1.77522 0.93960 1.09739 1.34186 1.48391 1.06105 1.02489 1.62900
1.22360 0.75048 1.05118 1.02961 0.91868 0.87562 0.92020 0.80153
0.73347 0.77997 0.90598 0.90915 0.89072 0.88729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.42 101.05 0.95 1.02 16
2 O -0.29 -3.44 10.57 -18.95 -0.20 -3.64 16
3 C 0.28 4.00 7.78 -16.93 -0.13 3.87 16
4 C -0.28 -4.91 9.63 -39.63 -0.38 -5.29 16
5 C 0.33 5.93 8.10 -154.59 -1.25 4.67 16
6 N -0.62 -11.31 5.43 -11.77 -0.06 -11.37 16
7 C 0.52 10.89 7.83 -11.92 -0.09 10.79 16
8 O -0.52 -11.13 13.58 5.39 0.07 -11.05 16
9 C 0.40 9.65 7.81 -11.92 -0.09 9.56 16
10 O -0.57 -14.98 16.03 5.35 0.09 -14.89 16
11 N -0.52 -12.76 5.06 -11.62 -0.06 -12.82 16
12 C -0.31 -8.34 10.16 -15.15 -0.15 -8.50 16
13 H 0.13 3.93 7.37 -52.48 -0.39 3.54 16
14 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16
15 N -0.84 -22.96 13.94 55.53 0.77 -22.19 16
16 Si 0.88 18.85 27.74 -169.99 -4.72 14.14 16
17 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16
18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
19 H -0.26 -5.35 6.53 56.52 0.37 -4.98 16
20 N -0.32 -5.18 12.59 31.40 0.40 -4.78 16
21 N -0.40 -5.27 4.02 -68.30 -0.27 -5.55 16
22 C 0.09 0.62 9.58 59.85 0.57 1.20 16
23 H 0.06 0.31 5.90 -51.93 -0.31 0.00 16
24 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16
25 H 0.06 0.29 6.45 -51.93 -0.33 -0.04 16
26 H 0.18 3.36 5.90 -52.49 -0.31 3.05 16
27 H 0.43 7.33 8.28 -40.82 -0.34 6.99 16
28 H 0.39 8.82 5.22 -40.82 -0.21 8.61 16
29 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16
30 H 0.07 0.40 7.57 -51.92 -0.39 0.01 16
31 H 0.09 0.42 4.68 -51.93 -0.24 0.17 16
32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 281.45 15.07 4.24 4.24
Total: -1.00 -32.48 281.45 -2.96 -35.44
By element:
Atomic # 1 Polarization: 16.39 SS G_CDS: -2.54 Total: 13.85 kcal
Atomic # 6 Polarization: 19.30 SS G_CDS: -0.68 Total: 18.63 kcal
Atomic # 7 Polarization: -57.48 SS G_CDS: 0.77 Total: -56.71 kcal
Atomic # 8 Polarization: -29.55 SS G_CDS: -0.04 Total: -29.59 kcal
Atomic # 14 Polarization: 18.85 SS G_CDS: -4.72 Total: 14.14 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -32.48 -2.96 -35.44 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000302267845.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.114 kcal
(2) G-P(sol) polarization free energy of solvation -32.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds