Wall clock time and date at job start Mon Mar 30 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35749 * 117.00191 * 2 1 4 4 C 1.35837 * 126.12941 * 179.74171 * 3 2 1 5 5 C 1.40396 * 107.78579 * 180.12296 * 4 3 2 6 6 N 1.39919 * 125.93720 * 179.82925 * 5 4 3 7 7 C 1.34777 * 119.99938 * 359.72188 * 6 5 4 8 8 O 1.21473 * 119.99885 * 359.97438 * 7 6 5 9 9 C 1.48733 * 119.99707 * 179.72143 * 7 6 5 10 10 O 1.21513 * 119.99918 * 0.27663 * 9 7 6 11 11 N 1.34774 * 120.00086 * 180.27230 * 9 7 6 12 12 C 1.36119 * 120.00287 * 179.97438 * 11 9 7 13 13 H 1.08003 * 120.00015 * 0.02562 * 12 11 9 14 14 C 1.39578 * 120.00249 * 180.02562 * 12 11 9 15 15 N 1.31020 * 120.00301 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99945 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47028 * 89.99954 * 16 14 12 18 18 H 1.48498 * 109.47194 * 209.99936 * 16 14 12 19 19 H 1.48504 * 109.47075 * 330.00125 * 16 14 12 20 20 N 1.31275 * 108.12356 * 359.57160 * 5 4 3 21 21 N 1.35189 * 126.12557 * 359.38819 * 3 2 1 22 22 C 1.46499 * 125.97450 * 0.06767 * 21 3 2 23 23 H 1.09000 * 109.47265 * 51.82856 * 1 2 3 24 24 H 1.09007 * 109.47236 * 171.82424 * 1 2 3 25 25 H 1.08998 * 109.47328 * 291.82463 * 1 2 3 26 26 H 1.08002 * 126.10787 * 359.97438 * 4 3 2 27 27 H 0.96998 * 119.99885 * 179.71496 * 6 5 4 28 28 H 0.97008 * 119.99772 * 0.02562 * 11 9 7 29 29 H 0.97001 * 119.99850 * 180.02562 * 15 14 12 30 30 H 1.09007 * 109.46798 * 277.03155 * 22 21 3 31 31 H 1.08999 * 109.47163 * 37.03288 * 22 21 3 32 32 H 1.08992 * 109.47321 * 157.03596 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.3865 1.4250 0.0049 5 6 3.5978 2.8130 0.0058 6 7 4.8414 3.4542 0.0138 7 6 5.9752 2.7257 0.0273 8 8 5.9175 1.5124 0.0329 9 6 7.2971 3.4074 0.0295 10 8 7.3548 4.6211 0.0243 11 7 8.4310 2.6789 0.0374 12 6 9.6408 3.3028 0.0389 13 1 9.6921 4.3816 0.0342 14 6 10.8151 2.5483 0.0466 15 7 11.9796 3.1488 0.0485 16 14 10.7264 0.6824 0.0540 17 1 10.7083 0.1821 -1.3442 18 1 11.9113 0.1333 0.7608 19 1 9.4890 0.2484 0.7511 20 7 2.4260 3.4045 -0.0078 21 7 1.4343 2.4154 -0.0117 22 6 -0.0122 2.6471 -0.0251 23 1 -0.3634 0.6351 -0.8079 24 1 -0.3634 -1.0173 -0.1462 25 1 -0.3634 0.3820 0.9540 26 1 4.1533 0.6645 0.0100 27 1 4.8874 4.4231 0.0096 28 1 8.3849 1.7100 0.0413 29 1 12.7956 2.6244 0.0535 30 1 -0.3822 2.5749 -1.0480 31 1 -0.5059 1.8979 0.5937 32 1 -0.2246 3.6410 0.3686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302267845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:49 Heat of formation + Delta-G solvation = 9.673334 kcal Electronic energy + Delta-G solvation = -19815.615696 eV Core-core repulsion = 16394.532135 eV Total energy + Delta-G solvation = -3421.083561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66682 -39.85196 -38.42679 -37.40961 -35.03267 -34.12534 -32.65505 -31.94270 -29.86791 -27.79264 -26.57883 -25.72587 -23.41907 -21.74170 -20.65015 -19.46312 -19.03788 -18.16228 -16.86133 -16.78547 -16.37148 -15.46130 -15.32920 -15.22498 -14.99071 -14.58359 -14.55533 -13.89188 -13.58273 -13.51995 -12.99826 -12.92671 -12.85909 -12.48319 -11.78044 -11.64354 -11.31184 -10.75852 -10.64300 -10.48932 -10.36726 -10.13563 -9.82343 -8.51950 -8.48184 -8.35369 -8.22677 -6.64843 -4.05457 1.63741 2.04821 2.15816 2.69621 2.96254 3.05544 3.08887 3.10872 3.19246 3.91673 4.10122 4.22966 4.47970 4.57530 4.68371 4.78828 4.89677 5.06814 5.13927 5.30778 5.38075 5.53723 5.74228 6.04059 6.33249 6.92224 7.13447 7.22550 7.32057 7.78667 7.91208 8.14003 8.38945 8.66010 9.11629 9.53329 10.44449 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.004097 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.272958 B = 6832.721063 C = 7556.526774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.289 6.289 3 C 0.277 3.723 4 C -0.283 4.283 5 C 0.334 3.666 6 N -0.616 5.616 7 C 0.523 3.477 8 O -0.520 6.520 9 C 0.405 3.595 10 O -0.575 6.575 11 N -0.518 5.518 12 C -0.306 4.306 13 H 0.130 0.870 14 C 0.054 3.946 15 N -0.843 5.843 16 Si 0.876 3.124 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.258 1.258 20 N -0.320 5.320 21 N -0.402 5.402 22 C 0.086 3.914 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.181 0.819 27 H 0.428 0.572 28 H 0.385 0.615 29 H 0.283 0.717 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.093 -6.437 -0.045 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.195 6.195 3 C 0.110 3.890 4 C -0.313 4.313 5 C 0.078 3.922 6 N -0.266 5.266 7 C 0.308 3.692 8 O -0.394 6.394 9 C 0.189 3.811 10 O -0.461 6.461 11 N -0.155 5.155 12 C -0.435 4.435 13 H 0.147 0.853 14 C -0.156 4.156 15 N -0.480 5.480 16 Si 0.701 3.299 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.182 1.182 20 N -0.154 5.154 21 N -0.199 5.199 22 C -0.055 4.055 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.080 0.920 26 H 0.198 0.802 27 H 0.267 0.733 28 H 0.220 0.780 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.443 -5.743 -0.055 23.166 hybrid contribution 0.094 -1.542 0.007 1.545 sum -22.349 -7.284 -0.048 23.506 Atomic orbital electron populations 1.23616 0.78443 1.05018 1.01328 1.86298 1.21208 1.22070 1.89926 1.19581 0.91019 0.78811 0.99614 1.20858 0.92221 0.95942 1.22269 1.18763 0.85989 0.90627 0.96811 1.42382 1.00917 1.11786 1.71518 1.20856 0.85617 0.86986 0.75753 1.90626 1.87288 1.13964 1.47480 1.18367 0.83369 0.87543 0.91774 1.90657 1.85872 1.12485 1.57113 1.41796 1.05572 1.08871 1.59282 1.19604 0.79983 0.96202 1.47752 0.85256 1.25261 0.94697 0.99609 0.95987 1.69442 0.97801 1.37257 1.43455 0.86665 0.79468 0.83886 0.79932 1.18743 1.19433 1.18243 1.77522 0.93960 1.09739 1.34186 1.48391 1.06105 1.02489 1.62900 1.22360 0.75048 1.05118 1.02961 0.91868 0.87562 0.92020 0.80153 0.73347 0.77997 0.90598 0.90915 0.89072 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.42 101.05 0.95 1.02 16 2 O -0.29 -3.44 10.57 -18.95 -0.20 -3.64 16 3 C 0.28 4.00 7.78 -16.93 -0.13 3.87 16 4 C -0.28 -4.91 9.63 -39.63 -0.38 -5.29 16 5 C 0.33 5.93 8.10 -154.59 -1.25 4.67 16 6 N -0.62 -11.31 5.43 -11.77 -0.06 -11.37 16 7 C 0.52 10.89 7.83 -11.92 -0.09 10.79 16 8 O -0.52 -11.13 13.58 5.39 0.07 -11.05 16 9 C 0.40 9.65 7.81 -11.92 -0.09 9.56 16 10 O -0.57 -14.98 16.03 5.35 0.09 -14.89 16 11 N -0.52 -12.76 5.06 -11.62 -0.06 -12.82 16 12 C -0.31 -8.34 10.16 -15.15 -0.15 -8.50 16 13 H 0.13 3.93 7.37 -52.48 -0.39 3.54 16 14 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 15 N -0.84 -22.96 13.94 55.53 0.77 -22.19 16 16 Si 0.88 18.85 27.74 -169.99 -4.72 14.14 16 17 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.35 6.53 56.52 0.37 -4.98 16 20 N -0.32 -5.18 12.59 31.40 0.40 -4.78 16 21 N -0.40 -5.27 4.02 -68.30 -0.27 -5.55 16 22 C 0.09 0.62 9.58 59.85 0.57 1.20 16 23 H 0.06 0.31 5.90 -51.93 -0.31 0.00 16 24 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.06 0.29 6.45 -51.93 -0.33 -0.04 16 26 H 0.18 3.36 5.90 -52.49 -0.31 3.05 16 27 H 0.43 7.33 8.28 -40.82 -0.34 6.99 16 28 H 0.39 8.82 5.22 -40.82 -0.21 8.61 16 29 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 30 H 0.07 0.40 7.57 -51.92 -0.39 0.01 16 31 H 0.09 0.42 4.68 -51.93 -0.24 0.17 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 281.45 15.07 4.24 4.24 Total: -1.00 -32.48 281.45 -2.96 -35.44 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -2.54 Total: 13.85 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: -0.68 Total: 18.63 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.77 Total: -56.71 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.04 Total: -29.59 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.72 Total: 14.14 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.48 -2.96 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302267845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.114 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds