Wall clock time and date at job start Mon Mar 30 2020 05:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35749 * 117.00191 * 2 1 4 4 C 1.35837 * 126.12941 * 179.74171 * 3 2 1 5 5 C 1.40396 * 107.78579 * 180.12296 * 4 3 2 6 6 N 1.39919 * 125.93720 * 179.82925 * 5 4 3 7 7 C 1.34777 * 119.99938 * 359.72188 * 6 5 4 8 8 O 1.21473 * 119.99885 * 359.97438 * 7 6 5 9 9 C 1.48733 * 119.99707 * 179.72143 * 7 6 5 10 10 O 1.21513 * 119.99918 * 0.27663 * 9 7 6 11 11 N 1.34774 * 120.00086 * 180.27230 * 9 7 6 12 12 C 1.36119 * 120.00287 * 179.97438 * 11 9 7 13 13 H 1.08003 * 120.00015 * 0.02562 * 12 11 9 14 14 C 1.39578 * 120.00249 * 180.02562 * 12 11 9 15 15 N 1.31020 * 120.00301 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99945 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47028 * 89.99954 * 16 14 12 18 18 H 1.48498 * 109.47194 * 209.99936 * 16 14 12 19 19 H 1.48504 * 109.47075 * 330.00125 * 16 14 12 20 20 N 1.31275 * 108.12356 * 359.57160 * 5 4 3 21 21 N 1.35189 * 126.12557 * 359.38819 * 3 2 1 22 22 C 1.46499 * 125.97450 * 0.06767 * 21 3 2 23 23 H 1.09000 * 109.47265 * 51.82856 * 1 2 3 24 24 H 1.09007 * 109.47236 * 171.82424 * 1 2 3 25 25 H 1.08998 * 109.47328 * 291.82463 * 1 2 3 26 26 H 1.08002 * 126.10787 * 359.97438 * 4 3 2 27 27 H 0.96998 * 119.99885 * 179.71496 * 6 5 4 28 28 H 0.97008 * 119.99772 * 0.02562 * 11 9 7 29 29 H 0.97001 * 119.99850 * 180.02562 * 15 14 12 30 30 H 1.09007 * 109.46798 * 277.03155 * 22 21 3 31 31 H 1.08999 * 109.47163 * 37.03288 * 22 21 3 32 32 H 1.08992 * 109.47321 * 157.03596 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.3865 1.4250 0.0049 5 6 3.5978 2.8130 0.0058 6 7 4.8414 3.4542 0.0138 7 6 5.9752 2.7257 0.0273 8 8 5.9175 1.5124 0.0329 9 6 7.2971 3.4074 0.0295 10 8 7.3548 4.6211 0.0243 11 7 8.4310 2.6789 0.0374 12 6 9.6408 3.3028 0.0389 13 1 9.6921 4.3816 0.0342 14 6 10.8151 2.5483 0.0466 15 7 11.9796 3.1488 0.0485 16 14 10.7264 0.6824 0.0540 17 1 10.7083 0.1821 -1.3442 18 1 11.9113 0.1333 0.7608 19 1 9.4890 0.2484 0.7511 20 7 2.4260 3.4045 -0.0078 21 7 1.4343 2.4154 -0.0117 22 6 -0.0122 2.6471 -0.0251 23 1 -0.3634 0.6351 -0.8079 24 1 -0.3634 -1.0173 -0.1462 25 1 -0.3634 0.3820 0.9540 26 1 4.1533 0.6645 0.0100 27 1 4.8874 4.4231 0.0096 28 1 8.3849 1.7100 0.0413 29 1 12.7956 2.6244 0.0535 30 1 -0.3822 2.5749 -1.0480 31 1 -0.5059 1.8979 0.5937 32 1 -0.2246 3.6410 0.3686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302267845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:49 Heat of formation + Delta-G solvation = -17.514213 kcal Electronic energy + Delta-G solvation = -19816.794636 eV Core-core repulsion = 16394.532135 eV Total energy + Delta-G solvation = -3422.262502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.82517 -41.49805 -39.67111 -39.02546 -36.72343 -35.83125 -34.01418 -33.64023 -30.95275 -28.83703 -28.02301 -26.86035 -25.07088 -22.89857 -22.05772 -21.29153 -20.78046 -19.39258 -18.36593 -17.89948 -17.73083 -17.02874 -16.83129 -16.65441 -16.16175 -15.92698 -15.51825 -15.39255 -14.86879 -14.80912 -14.58534 -14.41606 -14.08941 -13.98580 -13.08880 -12.73975 -12.55639 -12.54076 -12.23331 -11.95378 -11.71872 -11.67453 -11.44852 -10.49435 -10.42252 -9.50883 -9.45348 -8.63642 -6.17321 0.13215 0.81661 0.89525 1.31965 1.34300 1.41913 1.57063 1.65592 2.08825 2.11706 2.29825 2.88484 3.05310 3.53054 3.68243 4.04251 4.10059 4.31191 4.32559 4.39159 4.45527 4.54085 4.74085 4.91755 5.11487 5.25168 5.54044 5.70828 5.82259 6.23043 6.36249 6.50177 6.62010 6.75233 7.09214 7.56774 8.50147 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037612 B = 0.004097 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.272958 B = 6832.721063 C = 7556.526774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.301 6.301 3 C 0.297 3.703 4 C -0.320 4.320 5 C 0.312 3.688 6 N -0.605 5.605 7 C 0.536 3.464 8 O -0.522 6.522 9 C 0.411 3.589 10 O -0.599 6.599 11 N -0.520 5.520 12 C -0.337 4.337 13 H 0.082 0.918 14 C 0.014 3.986 15 N -0.886 5.886 16 Si 0.947 3.053 17 H -0.251 1.251 18 H -0.257 1.257 19 H -0.245 1.245 20 N -0.327 5.327 21 N -0.388 5.388 22 C 0.068 3.932 23 H 0.081 0.919 24 H 0.131 0.869 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.432 0.568 28 H 0.395 0.605 29 H 0.292 0.708 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.352 -8.635 -0.052 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.207 6.207 3 C 0.127 3.873 4 C -0.351 4.351 5 C 0.057 3.943 6 N -0.255 5.255 7 C 0.319 3.681 8 O -0.396 6.396 9 C 0.196 3.804 10 O -0.486 6.486 11 N -0.158 5.158 12 C -0.466 4.466 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.523 5.523 16 Si 0.766 3.234 17 H -0.175 1.175 18 H -0.180 1.180 19 H -0.169 1.169 20 N -0.162 5.162 21 N -0.186 5.186 22 C -0.070 4.070 23 H 0.099 0.901 24 H 0.149 0.851 25 H 0.099 0.901 26 H 0.180 0.820 27 H 0.271 0.729 28 H 0.232 0.768 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.749 -7.925 -0.063 26.941 hybrid contribution 0.762 -0.801 0.003 1.106 sum -24.987 -8.726 -0.059 26.467 Atomic orbital electron populations 1.24114 0.75231 1.07427 1.03165 1.86328 1.24508 1.20485 1.89368 1.19372 0.90501 0.80045 0.97392 1.20719 0.93688 0.95417 1.25288 1.18760 0.85763 0.90945 0.98799 1.42101 1.00988 1.11808 1.70583 1.20036 0.85066 0.86705 0.76307 1.90642 1.87291 1.13850 1.47837 1.18969 0.84482 0.87348 0.89642 1.90637 1.86732 1.13914 1.57363 1.41629 1.04939 1.09254 1.60024 1.19217 0.81893 0.94514 1.51001 0.90039 1.26093 0.93568 1.05050 0.94487 1.69542 0.98788 1.39728 1.44212 0.85608 0.80370 0.76685 0.80742 1.17476 1.18047 1.16904 1.77435 0.93981 1.11039 1.33771 1.48810 1.07540 1.01456 1.60747 1.22963 0.71673 1.06895 1.05430 0.90061 0.85079 0.90051 0.82027 0.72882 0.76822 0.89731 0.88475 0.85835 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.42 113.37 1.07 1.02 16 2 O -0.30 -6.28 10.57 -90.74 -0.96 -7.24 16 3 C 0.30 7.93 7.78 83.62 0.65 8.58 16 4 C -0.32 -10.95 9.63 22.24 0.21 -10.74 16 5 C 0.31 10.90 8.10 133.39 1.08 11.98 16 6 N -0.61 -22.31 5.43 -309.47 -1.68 -23.99 16 7 C 0.54 22.47 7.83 87.05 0.68 23.15 16 8 O -0.52 -22.28 13.58 -3.63 -0.05 -22.33 16 9 C 0.41 20.08 7.81 87.05 0.68 20.76 16 10 O -0.60 -32.37 16.03 -3.75 -0.06 -32.43 16 11 N -0.52 -26.15 5.06 -308.97 -1.56 -27.71 16 12 C -0.34 -19.19 10.16 84.35 0.86 -18.33 16 13 H 0.08 5.32 7.37 -2.91 -0.02 5.30 16 14 C 0.01 0.74 5.51 85.14 0.47 1.21 16 15 N -0.89 -49.62 13.94 21.76 0.30 -49.32 16 16 Si 0.95 38.49 27.74 68.60 1.90 40.39 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.25 -9.39 6.53 99.48 0.65 -8.74 16 20 N -0.33 -10.10 12.59 -54.58 -0.69 -10.79 16 21 N -0.39 -9.07 4.02 -481.30 -1.93 -11.00 16 22 C 0.07 0.70 9.58 127.77 1.22 1.92 16 23 H 0.08 0.38 5.90 -2.39 -0.01 0.37 16 24 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.08 0.35 6.45 -2.39 -0.02 0.33 16 26 H 0.16 6.07 5.90 -2.91 -0.02 6.06 16 27 H 0.43 14.96 8.28 -92.71 -0.77 14.19 16 28 H 0.40 18.01 5.22 -92.70 -0.48 17.52 16 29 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 30 H 0.10 0.60 7.57 -2.38 -0.02 0.58 16 31 H 0.12 0.48 4.68 -2.39 -0.01 0.47 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.76 281.45 2.11 -71.66 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.09 Total: 33.21 kcal Atomic # 6 Polarization: 32.63 SS G_CDS: 6.92 Total: 39.56 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -5.56 Total: -122.81 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -1.07 Total: -62.00 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -73.76 2.11 -71.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302267845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.143 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds