Wall clock time and date at job start Mon Mar 30 2020 05:28:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35749 * 117.00191 * 2 1
4 4 C 1.35837 * 126.12941 * 179.74171 * 3 2 1
5 5 C 1.40396 * 107.78579 * 180.12296 * 4 3 2
6 6 N 1.39919 * 125.93720 * 179.82925 * 5 4 3
7 7 C 1.34777 * 119.99938 * 359.72188 * 6 5 4
8 8 O 1.21473 * 119.99885 * 359.97438 * 7 6 5
9 9 C 1.48733 * 119.99707 * 179.72143 * 7 6 5
10 10 O 1.21513 * 119.99918 * 0.27663 * 9 7 6
11 11 N 1.34774 * 120.00086 * 180.27230 * 9 7 6
12 12 C 1.36119 * 120.00287 * 179.97438 * 11 9 7
13 13 H 1.08003 * 120.00015 * 0.02562 * 12 11 9
14 14 C 1.39578 * 120.00249 * 180.02562 * 12 11 9
15 15 N 1.31020 * 120.00301 * 180.02562 * 14 12 11
16 16 Si 1.86806 * 119.99945 * 0.02562 * 14 12 11
17 17 H 1.48505 * 109.47028 * 89.99954 * 16 14 12
18 18 H 1.48498 * 109.47194 * 209.99936 * 16 14 12
19 19 H 1.48504 * 109.47075 * 330.00125 * 16 14 12
20 20 N 1.31275 * 108.12356 * 359.57160 * 5 4 3
21 21 N 1.35189 * 126.12557 * 359.38819 * 3 2 1
22 22 C 1.46499 * 125.97450 * 0.06767 * 21 3 2
23 23 H 1.09000 * 109.47265 * 51.82856 * 1 2 3
24 24 H 1.09007 * 109.47236 * 171.82424 * 1 2 3
25 25 H 1.08998 * 109.47328 * 291.82463 * 1 2 3
26 26 H 1.08002 * 126.10787 * 359.97438 * 4 3 2
27 27 H 0.96998 * 119.99885 * 179.71496 * 6 5 4
28 28 H 0.97008 * 119.99772 * 0.02562 * 11 9 7
29 29 H 0.97001 * 119.99850 * 180.02562 * 15 14 12
30 30 H 1.09007 * 109.46798 * 277.03155 * 22 21 3
31 31 H 1.08999 * 109.47163 * 37.03288 * 22 21 3
32 32 H 1.08992 * 109.47321 * 157.03596 * 22 21 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2095 0.0000
4 6 3.3865 1.4250 0.0049
5 6 3.5978 2.8130 0.0058
6 7 4.8414 3.4542 0.0138
7 6 5.9752 2.7257 0.0273
8 8 5.9175 1.5124 0.0329
9 6 7.2971 3.4074 0.0295
10 8 7.3548 4.6211 0.0243
11 7 8.4310 2.6789 0.0374
12 6 9.6408 3.3028 0.0389
13 1 9.6921 4.3816 0.0342
14 6 10.8151 2.5483 0.0466
15 7 11.9796 3.1488 0.0485
16 14 10.7264 0.6824 0.0540
17 1 10.7083 0.1821 -1.3442
18 1 11.9113 0.1333 0.7608
19 1 9.4890 0.2484 0.7511
20 7 2.4260 3.4045 -0.0078
21 7 1.4343 2.4154 -0.0117
22 6 -0.0122 2.6471 -0.0251
23 1 -0.3634 0.6351 -0.8079
24 1 -0.3634 -1.0173 -0.1462
25 1 -0.3634 0.3820 0.9540
26 1 4.1533 0.6645 0.0100
27 1 4.8874 4.4231 0.0096
28 1 8.3849 1.7100 0.0413
29 1 12.7956 2.6244 0.0535
30 1 -0.3822 2.5749 -1.0480
31 1 -0.5059 1.8979 0.5937
32 1 -0.2246 3.6410 0.3686
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000302267845.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:49
Heat of formation + Delta-G solvation = -17.514213 kcal
Electronic energy + Delta-G solvation = -19816.794636 eV
Core-core repulsion = 16394.532135 eV
Total energy + Delta-G solvation = -3422.262502 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.100 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-42.82517 -41.49805 -39.67111 -39.02546 -36.72343 -35.83125 -34.01418 -33.64023
-30.95275 -28.83703 -28.02301 -26.86035 -25.07088 -22.89857 -22.05772 -21.29153
-20.78046 -19.39258 -18.36593 -17.89948 -17.73083 -17.02874 -16.83129 -16.65441
-16.16175 -15.92698 -15.51825 -15.39255 -14.86879 -14.80912 -14.58534 -14.41606
-14.08941 -13.98580 -13.08880 -12.73975 -12.55639 -12.54076 -12.23331 -11.95378
-11.71872 -11.67453 -11.44852 -10.49435 -10.42252 -9.50883 -9.45348 -8.63642
-6.17321 0.13215 0.81661 0.89525 1.31965 1.34300 1.41913 1.57063
1.65592 2.08825 2.11706 2.29825 2.88484 3.05310 3.53054 3.68243
4.04251 4.10059 4.31191 4.32559 4.39159 4.45527 4.54085 4.74085
4.91755 5.11487 5.25168 5.54044 5.70828 5.82259 6.23043 6.36249
6.50177 6.62010 6.75233 7.09214 7.56774 8.50147
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.037612 B = 0.004097 C = 0.003705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 744.272958 B = 6832.721063 C = 7556.526774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.006 4.006
2 O -0.301 6.301
3 C 0.297 3.703
4 C -0.320 4.320
5 C 0.312 3.688
6 N -0.605 5.605
7 C 0.536 3.464
8 O -0.522 6.522
9 C 0.411 3.589
10 O -0.599 6.599
11 N -0.520 5.520
12 C -0.337 4.337
13 H 0.082 0.918
14 C 0.014 3.986
15 N -0.886 5.886
16 Si 0.947 3.053
17 H -0.251 1.251
18 H -0.257 1.257
19 H -0.245 1.245
20 N -0.327 5.327
21 N -0.388 5.388
22 C 0.068 3.932
23 H 0.081 0.919
24 H 0.131 0.869
25 H 0.081 0.919
26 H 0.162 0.838
27 H 0.432 0.568
28 H 0.395 0.605
29 H 0.292 0.708
30 H 0.097 0.903
31 H 0.124 0.876
32 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.352 -8.635 -0.052 26.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 O -0.207 6.207
3 C 0.127 3.873
4 C -0.351 4.351
5 C 0.057 3.943
6 N -0.255 5.255
7 C 0.319 3.681
8 O -0.396 6.396
9 C 0.196 3.804
10 O -0.486 6.486
11 N -0.158 5.158
12 C -0.466 4.466
13 H 0.100 0.900
14 C -0.192 4.192
15 N -0.523 5.523
16 Si 0.766 3.234
17 H -0.175 1.175
18 H -0.180 1.180
19 H -0.169 1.169
20 N -0.162 5.162
21 N -0.186 5.186
22 C -0.070 4.070
23 H 0.099 0.901
24 H 0.149 0.851
25 H 0.099 0.901
26 H 0.180 0.820
27 H 0.271 0.729
28 H 0.232 0.768
29 H 0.103 0.897
30 H 0.115 0.885
31 H 0.142 0.858
32 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -25.749 -7.925 -0.063 26.941
hybrid contribution 0.762 -0.801 0.003 1.106
sum -24.987 -8.726 -0.059 26.467
Atomic orbital electron populations
1.24114 0.75231 1.07427 1.03165 1.86328 1.24508 1.20485 1.89368
1.19372 0.90501 0.80045 0.97392 1.20719 0.93688 0.95417 1.25288
1.18760 0.85763 0.90945 0.98799 1.42101 1.00988 1.11808 1.70583
1.20036 0.85066 0.86705 0.76307 1.90642 1.87291 1.13850 1.47837
1.18969 0.84482 0.87348 0.89642 1.90637 1.86732 1.13914 1.57363
1.41629 1.04939 1.09254 1.60024 1.19217 0.81893 0.94514 1.51001
0.90039 1.26093 0.93568 1.05050 0.94487 1.69542 0.98788 1.39728
1.44212 0.85608 0.80370 0.76685 0.80742 1.17476 1.18047 1.16904
1.77435 0.93981 1.11039 1.33771 1.48810 1.07540 1.01456 1.60747
1.22963 0.71673 1.06895 1.05430 0.90061 0.85079 0.90051 0.82027
0.72882 0.76822 0.89731 0.88475 0.85835 0.87870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.05 9.42 113.37 1.07 1.02 16
2 O -0.30 -6.28 10.57 -90.74 -0.96 -7.24 16
3 C 0.30 7.93 7.78 83.62 0.65 8.58 16
4 C -0.32 -10.95 9.63 22.24 0.21 -10.74 16
5 C 0.31 10.90 8.10 133.39 1.08 11.98 16
6 N -0.61 -22.31 5.43 -309.47 -1.68 -23.99 16
7 C 0.54 22.47 7.83 87.05 0.68 23.15 16
8 O -0.52 -22.28 13.58 -3.63 -0.05 -22.33 16
9 C 0.41 20.08 7.81 87.05 0.68 20.76 16
10 O -0.60 -32.37 16.03 -3.75 -0.06 -32.43 16
11 N -0.52 -26.15 5.06 -308.97 -1.56 -27.71 16
12 C -0.34 -19.19 10.16 84.35 0.86 -18.33 16
13 H 0.08 5.32 7.37 -2.91 -0.02 5.30 16
14 C 0.01 0.74 5.51 85.14 0.47 1.21 16
15 N -0.89 -49.62 13.94 21.76 0.30 -49.32 16
16 Si 0.95 38.49 27.74 68.60 1.90 40.39 16
17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16
18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16
19 H -0.25 -9.39 6.53 99.48 0.65 -8.74 16
20 N -0.33 -10.10 12.59 -54.58 -0.69 -10.79 16
21 N -0.39 -9.07 4.02 -481.30 -1.93 -11.00 16
22 C 0.07 0.70 9.58 127.77 1.22 1.92 16
23 H 0.08 0.38 5.90 -2.39 -0.01 0.37 16
24 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16
25 H 0.08 0.35 6.45 -2.39 -0.02 0.33 16
26 H 0.16 6.07 5.90 -2.91 -0.02 6.06 16
27 H 0.43 14.96 8.28 -92.71 -0.77 14.19 16
28 H 0.40 18.01 5.22 -92.70 -0.48 17.52 16
29 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16
30 H 0.10 0.60 7.57 -2.38 -0.02 0.58 16
31 H 0.12 0.48 4.68 -2.39 -0.01 0.47 16
32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16
Total: -1.00 -73.76 281.45 2.11 -71.66
By element:
Atomic # 1 Polarization: 33.31 SS G_CDS: -0.09 Total: 33.21 kcal
Atomic # 6 Polarization: 32.63 SS G_CDS: 6.92 Total: 39.56 kcal
Atomic # 7 Polarization: -117.25 SS G_CDS: -5.56 Total: -122.81 kcal
Atomic # 8 Polarization: -60.94 SS G_CDS: -1.07 Total: -62.00 kcal
Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal
Total: -73.76 2.11 -71.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000302267845.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.143 kcal
(2) G-P(sol) polarization free energy of solvation -73.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds