Wall clock time and date at job start Mon Mar 30 2020 05:33:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42906 * 113.99746 * 2 1
4 4 C 1.52999 * 109.46909 * 180.02562 * 3 2 1
5 5 N 1.46501 * 109.47307 * 64.99986 * 4 3 2
6 6 C 1.36780 * 119.99694 * 94.92813 * 5 4 3
7 7 H 1.07995 * 120.00435 * 323.26372 * 6 5 4
8 8 C 1.39117 * 119.99601 * 143.53558 * 6 5 4
9 9 N 1.31324 * 120.00062 * 340.87808 * 8 6 5
10 10 Si 1.86798 * 119.99629 * 160.87302 * 8 6 5
11 11 H 1.48504 * 109.46889 * 94.99732 * 10 8 6
12 12 H 1.48505 * 109.47242 * 214.99404 * 10 8 6
13 13 H 1.48501 * 109.47470 * 334.99629 * 10 8 6
14 14 C 1.34769 * 119.99935 * 274.93034 * 5 4 3
15 15 O 1.21573 * 120.00048 * 174.94451 * 14 5 4
16 16 C 1.47989 * 120.00175 * 354.93999 * 14 5 4
17 17 C 1.39338 * 119.71906 * 185.32010 * 16 14 5
18 18 C 1.38614 * 119.11441 * 179.77207 * 17 16 14
19 19 C 1.38541 * 118.53307 * 0.50339 * 18 17 16
20 20 C 1.38878 * 119.34718 * 359.74162 * 19 18 17
21 21 F 1.35107 * 119.57885 * 179.97438 * 20 19 18
22 22 N 1.31709 * 120.84938 * 0.02562 * 20 19 18
23 23 H 1.08996 * 109.46845 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.46844 * 299.99995 * 1 2 3
25 25 H 1.08999 * 109.46962 * 60.00099 * 1 2 3
26 26 H 1.09002 * 109.47317 * 59.99990 * 3 2 1
27 27 H 1.09002 * 109.47220 * 300.00153 * 3 2 1
28 28 H 1.09003 * 109.46975 * 304.99711 * 4 3 2
29 29 H 1.09003 * 109.46951 * 185.00064 * 4 3 2
30 30 H 0.96996 * 119.99572 * 185.02972 * 9 8 6
31 31 H 1.08005 * 120.43818 * 0.02562 * 17 16 14
32 32 H 1.08004 * 120.73240 * 180.22323 * 18 17 16
33 33 H 1.07998 * 120.32534 * 179.76989 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9757 0.5645 -1.2527
6 6 4.3622 1.3481 -2.3051
7 1 3.8504 2.2784 -2.5023
8 6 5.4110 0.9439 -3.1248
9 7 6.2645 0.0400 -2.7015
10 14 5.6052 1.6868 -4.8276
11 1 6.5595 2.8230 -4.7661
12 1 6.1235 0.6552 -5.7617
13 1 4.2872 2.1730 -5.3090
14 6 3.9998 -0.7781 -1.3676
15 8 4.2764 -1.2920 -2.4341
16 6 3.6896 -1.6267 -0.1956
17 6 3.8240 -3.0104 -0.2897
18 6 3.5347 -3.7930 0.8172
19 6 3.1106 -3.1666 1.9778
20 6 2.9934 -1.7830 2.0008
21 9 2.5796 -1.1674 3.1300
22 7 3.2795 -1.0632 0.9355
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 1.6886 1.8465 0.8900
27 1 1.6885 1.8465 -0.8900
28 1 3.8514 0.5683 0.8410
29 1 3.9785 2.1766 0.0889
30 1 7.0366 -0.1888 -3.2422
31 1 4.1532 -3.4667 -1.2117
32 1 3.6334 -4.8677 0.7743
33 1 2.8738 -3.7486 2.8562
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000316502989.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:49
Heat of formation + Delta-G solvation = -33.037759 kcal
Electronic energy + Delta-G solvation = -21478.513999 eV
Core-core repulsion = 18035.658384 eV
Total energy + Delta-G solvation = -3442.855615 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.101 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-48.55084 -39.76662 -37.78636 -36.87569 -34.16504 -32.51349 -31.67876 -30.14948
-28.69594 -25.76983 -25.41829 -23.55038 -22.74146 -21.80564 -19.93658 -17.50033
-17.07403 -16.21070 -15.88870 -15.71499 -15.50629 -15.43409 -14.85380 -14.70468
-14.22215 -13.86525 -13.24738 -13.14410 -12.89688 -12.64352 -12.16694 -11.90534
-11.63905 -11.47897 -11.22999 -11.12022 -10.85832 -10.63891 -10.51867 -10.23542
-9.47259 -9.17110 -8.89083 -8.56528 -8.37228 -8.04966 -7.05332 -6.18418
-3.82045 1.27225 1.62909 3.27629 3.37579 3.39922 3.82852 4.03383
4.24589 4.46917 4.83746 4.96083 4.98014 5.30418 5.34450 5.48199
5.53621 5.63886 5.70142 5.92889 5.96323 6.03371 6.15930 6.23651
6.27754 6.40689 6.49227 6.59471 6.92740 7.31839 7.52612 7.83868
8.12115 8.22950 8.97993 9.18267 9.61213 10.33528 10.88957
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.023449 B = 0.007772 C = 0.006627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.781819 B = 3601.981996 C = 4223.875461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.363 6.363
3 C 0.063 3.937
4 C 0.085 3.915
5 N -0.418 5.418
6 C -0.336 4.336
7 H 0.085 0.915
8 C 0.061 3.939
9 N -0.810 5.810
10 Si 0.918 3.082
11 H -0.282 1.282
12 H -0.282 1.282
13 H -0.271 1.271
14 C 0.505 3.495
15 O -0.534 6.534
16 C 0.169 3.831
17 C -0.147 4.147
18 C -0.060 4.060
19 C -0.213 4.213
20 C 0.294 3.706
21 F -0.124 7.124
22 N -0.458 5.458
23 H 0.072 0.928
24 H 0.030 0.970
25 H 0.032 0.968
26 H 0.039 0.961
27 H 0.040 0.960
28 H 0.119 0.881
29 H 0.071 0.929
30 H 0.267 0.733
31 H 0.146 0.854
32 H 0.138 0.862
33 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.850 -3.162 8.486 11.355
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.280 6.280
3 C -0.015 4.015
4 C -0.040 4.040
5 N -0.136 5.136
6 C -0.463 4.463
7 H 0.102 0.898
8 C -0.151 4.151
9 N -0.443 5.443
10 Si 0.744 3.256
11 H -0.209 1.209
12 H -0.208 1.208
13 H -0.195 1.195
14 C 0.293 3.707
15 O -0.412 6.412
16 C 0.030 3.970
17 C -0.169 4.169
18 C -0.085 4.085
19 C -0.235 4.235
20 C 0.139 3.861
21 F -0.103 7.103
22 N -0.176 5.176
23 H 0.090 0.910
24 H 0.049 0.951
25 H 0.051 0.949
26 H 0.057 0.943
27 H 0.058 0.942
28 H 0.136 0.864
29 H 0.089 0.911
30 H 0.077 0.923
31 H 0.163 0.837
32 H 0.155 0.845
33 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -6.558 -2.801 7.913 10.652
hybrid contribution -0.209 -0.118 -0.440 0.501
sum -6.767 -2.919 7.472 10.495
Atomic orbital electron populations
1.22616 0.83754 1.01437 0.98897 1.88145 1.17047 1.27884 1.94957
1.22843 0.95954 0.84337 0.98343 1.22387 0.91023 0.99487 0.91056
1.43112 1.55663 1.03917 1.10928 1.19228 1.15551 1.05149 1.06368
0.89768 1.25224 0.94530 0.95772 0.99582 1.69830 1.09390 1.27927
1.37182 0.86099 0.78338 0.78061 0.83057 1.20852 1.20775 1.19541
1.17092 0.85377 0.82291 0.85960 1.90605 1.51007 1.72192 1.27384
1.21746 0.91960 0.92473 0.90793 1.22079 1.00743 0.93983 1.00064
1.21294 0.95360 1.00231 0.91646 1.21691 1.07580 0.93501 1.00767
1.18409 0.96854 0.87604 0.83251 1.91559 1.87385 1.84305 1.47091
1.67693 1.12356 1.38561 0.99016 0.90951 0.95101 0.94915 0.94255
0.94201 0.86445 0.91109 0.92270 0.83657 0.84452 0.84736
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 11.01 101.05 1.11 1.58 16
2 O -0.36 -7.09 6.88 -35.23 -0.24 -7.33 16
3 C 0.06 1.19 6.19 37.16 0.23 1.42 16
4 C 0.08 1.82 5.65 -4.04 -0.02 1.80 16
5 N -0.42 -10.89 2.56 -115.84 -0.30 -11.19 16
6 C -0.34 -9.24 9.29 -15.02 -0.14 -9.38 16
7 H 0.08 2.19 7.90 -52.49 -0.41 1.78 16
8 C 0.06 1.70 4.37 -17.44 -0.08 1.62 16
9 N -0.81 -23.81 11.21 55.50 0.62 -23.19 16
10 Si 0.92 21.61 29.60 -169.99 -5.03 16.58 16
11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16
14 C 0.51 13.55 6.43 -12.27 -0.08 13.47 16
15 O -0.53 -16.04 13.65 5.30 0.07 -15.97 16
16 C 0.17 3.76 5.92 -83.02 -0.49 3.27 16
17 C -0.15 -2.81 9.63 -39.03 -0.38 -3.19 16
18 C -0.06 -0.88 10.16 -39.33 -0.40 -1.28 16
19 C -0.21 -3.11 10.09 -39.23 -0.40 -3.50 16
20 C 0.29 5.13 8.41 -17.37 -0.15 4.98 16
21 F -0.12 -2.05 17.29 2.25 0.04 -2.01 16
22 N -0.46 -9.28 3.52 -10.14 -0.04 -9.32 16
23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16
25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
28 H 0.12 2.54 4.86 -62.83 -0.31 2.24 16
29 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16
30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.15 2.81 7.65 -52.48 -0.40 2.41 16
32 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16
33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16
LS Contribution 286.71 15.07 4.32 4.32
Total: -1.00 -32.62 286.71 -4.97 -37.59
By element:
Atomic # 1 Polarization: 3.35 SS G_CDS: -3.63 Total: -0.28 kcal
Atomic # 6 Polarization: 11.58 SS G_CDS: -0.78 Total: 10.79 kcal
Atomic # 7 Polarization: -43.98 SS G_CDS: 0.29 Total: -43.69 kcal
Atomic # 8 Polarization: -23.13 SS G_CDS: -0.17 Total: -23.30 kcal
Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -32.62 -4.97 -37.59 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000316502989.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.551 kcal
(2) G-P(sol) polarization free energy of solvation -32.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.967 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds