Wall clock time and date at job start Mon Mar 30 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99746 * 2 1 4 4 C 1.52999 * 109.46909 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47307 * 64.99986 * 4 3 2 6 6 C 1.36780 * 119.99694 * 94.92813 * 5 4 3 7 7 H 1.07995 * 120.00435 * 323.26372 * 6 5 4 8 8 C 1.39117 * 119.99601 * 143.53558 * 6 5 4 9 9 N 1.31324 * 120.00062 * 340.87808 * 8 6 5 10 10 Si 1.86798 * 119.99629 * 160.87302 * 8 6 5 11 11 H 1.48504 * 109.46889 * 94.99732 * 10 8 6 12 12 H 1.48505 * 109.47242 * 214.99404 * 10 8 6 13 13 H 1.48501 * 109.47470 * 334.99629 * 10 8 6 14 14 C 1.34769 * 119.99935 * 274.93034 * 5 4 3 15 15 O 1.21573 * 120.00048 * 174.94451 * 14 5 4 16 16 C 1.47989 * 120.00175 * 354.93999 * 14 5 4 17 17 C 1.39338 * 119.71906 * 185.32010 * 16 14 5 18 18 C 1.38614 * 119.11441 * 179.77207 * 17 16 14 19 19 C 1.38541 * 118.53307 * 0.50339 * 18 17 16 20 20 C 1.38878 * 119.34718 * 359.74162 * 19 18 17 21 21 F 1.35107 * 119.57885 * 179.97438 * 20 19 18 22 22 N 1.31709 * 120.84938 * 0.02562 * 20 19 18 23 23 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46844 * 299.99995 * 1 2 3 25 25 H 1.08999 * 109.46962 * 60.00099 * 1 2 3 26 26 H 1.09002 * 109.47317 * 59.99990 * 3 2 1 27 27 H 1.09002 * 109.47220 * 300.00153 * 3 2 1 28 28 H 1.09003 * 109.46975 * 304.99711 * 4 3 2 29 29 H 1.09003 * 109.46951 * 185.00064 * 4 3 2 30 30 H 0.96996 * 119.99572 * 185.02972 * 9 8 6 31 31 H 1.08005 * 120.43818 * 0.02562 * 17 16 14 32 32 H 1.08004 * 120.73240 * 180.22323 * 18 17 16 33 33 H 1.07998 * 120.32534 * 179.76989 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.3622 1.3481 -2.3051 7 1 3.8504 2.2784 -2.5023 8 6 5.4110 0.9439 -3.1248 9 7 6.2645 0.0400 -2.7015 10 14 5.6052 1.6868 -4.8276 11 1 6.5595 2.8230 -4.7661 12 1 6.1235 0.6552 -5.7617 13 1 4.2872 2.1730 -5.3090 14 6 3.9998 -0.7781 -1.3676 15 8 4.2764 -1.2920 -2.4341 16 6 3.6896 -1.6267 -0.1956 17 6 3.8240 -3.0104 -0.2897 18 6 3.5347 -3.7930 0.8172 19 6 3.1106 -3.1666 1.9778 20 6 2.9934 -1.7830 2.0008 21 9 2.5796 -1.1674 3.1300 22 7 3.2795 -1.0632 0.9355 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8465 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0889 30 1 7.0366 -0.1888 -3.2422 31 1 4.1532 -3.4667 -1.2117 32 1 3.6334 -4.8677 0.7743 33 1 2.8738 -3.7486 2.8562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316502989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:49 Heat of formation + Delta-G solvation = -54.564944 kcal Electronic energy + Delta-G solvation = -21479.447488 eV Core-core repulsion = 18035.658384 eV Total energy + Delta-G solvation = -3443.789104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86089 -41.34406 -39.46814 -38.45605 -36.08190 -34.26376 -33.30540 -31.64985 -30.36002 -27.33723 -27.05982 -25.14705 -24.16593 -23.42956 -21.70567 -19.26690 -18.52403 -17.92126 -17.29642 -17.25529 -16.98953 -16.83178 -16.47035 -16.30554 -15.80647 -15.70158 -14.94022 -14.56956 -14.32818 -14.19969 -13.75608 -13.49922 -13.24634 -13.00868 -12.91965 -12.76854 -12.65586 -12.52621 -12.12197 -11.96896 -10.99506 -10.79749 -10.52698 -10.32621 -9.86253 -9.79879 -9.04321 -8.24412 -5.94551 -0.15515 0.29334 1.38408 1.46271 1.54321 2.23020 2.36634 2.61807 2.97579 3.13248 3.16712 3.41675 3.64995 4.03165 4.10559 4.18926 4.34181 4.49248 4.50941 4.60917 4.65464 4.71491 4.76554 4.87296 4.90047 5.05422 5.21127 5.38212 5.43678 5.83982 6.13360 6.46561 6.69436 6.96069 7.22051 7.63688 8.35580 8.84478 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.007772 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.781819 B = 3601.981996 C = 4223.875461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.073 3.927 4 C 0.082 3.918 5 N -0.435 5.435 6 C -0.363 4.363 7 H 0.088 0.912 8 C 0.012 3.988 9 N -0.853 5.853 10 Si 0.981 3.019 11 H -0.263 1.263 12 H -0.291 1.291 13 H -0.266 1.266 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.134 3.866 17 C -0.156 4.156 18 C -0.039 4.039 19 C -0.178 4.178 20 C 0.279 3.721 21 F -0.119 7.119 22 N -0.469 5.469 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.190 0.810 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 -4.430 10.613 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C -0.005 4.005 4 C -0.041 4.041 5 N -0.153 5.153 6 C -0.491 4.491 7 H 0.106 0.894 8 C -0.195 4.195 9 N -0.489 5.489 10 Si 0.805 3.195 11 H -0.188 1.188 12 H -0.217 1.217 13 H -0.190 1.190 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.003 4.003 17 C -0.178 4.178 18 C -0.064 4.064 19 C -0.199 4.199 20 C 0.124 3.876 21 F -0.098 7.098 22 N -0.188 5.188 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.135 0.865 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.207 0.793 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.965 -4.029 10.077 13.461 hybrid contribution 0.082 0.128 -0.863 0.876 sum -7.882 -3.901 9.214 12.737 Atomic orbital electron populations 1.22782 0.81728 1.02505 1.00001 1.88108 1.19302 1.28022 1.95168 1.22673 0.94043 0.84557 0.99195 1.22528 0.93042 0.99238 0.89320 1.43332 1.55917 1.04076 1.11983 1.19534 1.15923 1.05788 1.07861 0.89393 1.26118 0.94226 0.96235 1.02956 1.69948 1.10195 1.30314 1.38397 0.85131 0.78662 0.77469 0.78204 1.18769 1.21717 1.19005 1.17836 0.83759 0.82871 0.86935 1.90536 1.52859 1.73346 1.29721 1.21083 0.95652 0.93003 0.90550 1.22165 1.01060 0.93116 1.01460 1.21791 0.92742 1.02254 0.89596 1.22231 1.03483 0.92232 1.01998 1.18698 0.97332 0.88882 0.82731 1.91580 1.87310 1.84490 1.46397 1.67342 1.12403 1.39781 0.99228 0.89951 0.92870 0.94851 0.91140 0.95328 0.86455 0.90788 0.92736 0.84942 0.79327 0.79794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -14.86 6.88 -148.98 -1.02 -15.88 16 3 C 0.07 2.72 6.19 71.98 0.45 3.17 16 4 C 0.08 3.59 5.65 86.38 0.49 4.08 16 5 N -0.44 -23.57 2.56 -638.68 -1.63 -25.20 16 6 C -0.36 -20.84 9.29 84.13 0.78 -20.05 16 7 H 0.09 4.76 7.90 -2.91 -0.02 4.73 16 8 C 0.01 0.70 4.37 84.98 0.37 1.07 16 9 N -0.85 -52.69 11.21 21.69 0.24 -52.45 16 10 Si 0.98 45.95 29.60 68.60 2.03 47.98 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 C 0.50 27.78 6.43 86.83 0.56 28.34 16 15 O -0.58 -36.92 13.65 -3.94 -0.05 -36.97 16 16 C 0.13 6.04 5.92 41.84 0.25 6.29 16 17 C -0.16 -5.82 9.63 22.62 0.22 -5.60 16 18 C -0.04 -0.97 10.16 22.43 0.23 -0.74 16 19 C -0.18 -4.24 10.09 22.50 0.23 -4.01 16 20 C 0.28 8.86 8.41 84.86 0.71 9.58 16 21 F -0.12 -3.51 17.29 44.97 0.78 -2.74 16 22 N -0.47 -18.57 3.52 -186.01 -0.65 -19.22 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.12 5.15 4.86 -23.90 -0.12 5.03 16 29 H 0.07 3.06 8.00 -2.39 -0.02 3.05 16 30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.13 5.21 7.65 -2.91 -0.02 5.19 16 32 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -75.94 286.71 6.24 -69.71 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.03 Total: 10.64 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 5.53 Total: 24.13 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -2.05 Total: -96.87 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.08 Total: -52.86 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.94 6.24 -69.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316502989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.142 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds