Wall clock time and date at job start Mon Mar 30 2020 05:33:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42906 * 113.99746 * 2 1
4 4 C 1.52999 * 109.46909 * 180.02562 * 3 2 1
5 5 N 1.46501 * 109.47307 * 64.99986 * 4 3 2
6 6 C 1.36780 * 119.99694 * 94.92813 * 5 4 3
7 7 H 1.07995 * 120.00435 * 323.26372 * 6 5 4
8 8 C 1.39117 * 119.99601 * 143.53558 * 6 5 4
9 9 N 1.31324 * 120.00062 * 340.87808 * 8 6 5
10 10 Si 1.86798 * 119.99629 * 160.87302 * 8 6 5
11 11 H 1.48504 * 109.46889 * 94.99732 * 10 8 6
12 12 H 1.48505 * 109.47242 * 214.99404 * 10 8 6
13 13 H 1.48501 * 109.47470 * 334.99629 * 10 8 6
14 14 C 1.34769 * 119.99935 * 274.93034 * 5 4 3
15 15 O 1.21573 * 120.00048 * 174.94451 * 14 5 4
16 16 C 1.47989 * 120.00175 * 354.93999 * 14 5 4
17 17 C 1.39338 * 119.71906 * 185.32010 * 16 14 5
18 18 C 1.38614 * 119.11441 * 179.77207 * 17 16 14
19 19 C 1.38541 * 118.53307 * 0.50339 * 18 17 16
20 20 C 1.38878 * 119.34718 * 359.74162 * 19 18 17
21 21 F 1.35107 * 119.57885 * 179.97438 * 20 19 18
22 22 N 1.31709 * 120.84938 * 0.02562 * 20 19 18
23 23 H 1.08996 * 109.46845 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.46844 * 299.99995 * 1 2 3
25 25 H 1.08999 * 109.46962 * 60.00099 * 1 2 3
26 26 H 1.09002 * 109.47317 * 59.99990 * 3 2 1
27 27 H 1.09002 * 109.47220 * 300.00153 * 3 2 1
28 28 H 1.09003 * 109.46975 * 304.99711 * 4 3 2
29 29 H 1.09003 * 109.46951 * 185.00064 * 4 3 2
30 30 H 0.96996 * 119.99572 * 185.02972 * 9 8 6
31 31 H 1.08005 * 120.43818 * 0.02562 * 17 16 14
32 32 H 1.08004 * 120.73240 * 180.22323 * 18 17 16
33 33 H 1.07998 * 120.32534 * 179.76989 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9757 0.5645 -1.2527
6 6 4.3622 1.3481 -2.3051
7 1 3.8504 2.2784 -2.5023
8 6 5.4110 0.9439 -3.1248
9 7 6.2645 0.0400 -2.7015
10 14 5.6052 1.6868 -4.8276
11 1 6.5595 2.8230 -4.7661
12 1 6.1235 0.6552 -5.7617
13 1 4.2872 2.1730 -5.3090
14 6 3.9998 -0.7781 -1.3676
15 8 4.2764 -1.2920 -2.4341
16 6 3.6896 -1.6267 -0.1956
17 6 3.8240 -3.0104 -0.2897
18 6 3.5347 -3.7930 0.8172
19 6 3.1106 -3.1666 1.9778
20 6 2.9934 -1.7830 2.0008
21 9 2.5796 -1.1674 3.1300
22 7 3.2795 -1.0632 0.9355
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 1.6886 1.8465 0.8900
27 1 1.6885 1.8465 -0.8900
28 1 3.8514 0.5683 0.8410
29 1 3.9785 2.1766 0.0889
30 1 7.0366 -0.1888 -3.2422
31 1 4.1532 -3.4667 -1.2117
32 1 3.6334 -4.8677 0.7743
33 1 2.8738 -3.7486 2.8562
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000316502989.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:49
Heat of formation + Delta-G solvation = -54.564944 kcal
Electronic energy + Delta-G solvation = -21479.447488 eV
Core-core repulsion = 18035.658384 eV
Total energy + Delta-G solvation = -3443.789104 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.101 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-49.86089 -41.34406 -39.46814 -38.45605 -36.08190 -34.26376 -33.30540 -31.64985
-30.36002 -27.33723 -27.05982 -25.14705 -24.16593 -23.42956 -21.70567 -19.26690
-18.52403 -17.92126 -17.29642 -17.25529 -16.98953 -16.83178 -16.47035 -16.30554
-15.80647 -15.70158 -14.94022 -14.56956 -14.32818 -14.19969 -13.75608 -13.49922
-13.24634 -13.00868 -12.91965 -12.76854 -12.65586 -12.52621 -12.12197 -11.96896
-10.99506 -10.79749 -10.52698 -10.32621 -9.86253 -9.79879 -9.04321 -8.24412
-5.94551 -0.15515 0.29334 1.38408 1.46271 1.54321 2.23020 2.36634
2.61807 2.97579 3.13248 3.16712 3.41675 3.64995 4.03165 4.10559
4.18926 4.34181 4.49248 4.50941 4.60917 4.65464 4.71491 4.76554
4.87296 4.90047 5.05422 5.21127 5.38212 5.43678 5.83982 6.13360
6.46561 6.69436 6.96069 7.22051 7.63688 8.35580 8.84478
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.023449 B = 0.007772 C = 0.006627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.781819 B = 3601.981996 C = 4223.875461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.388 6.388
3 C 0.073 3.927
4 C 0.082 3.918
5 N -0.435 5.435
6 C -0.363 4.363
7 H 0.088 0.912
8 C 0.012 3.988
9 N -0.853 5.853
10 Si 0.981 3.019
11 H -0.263 1.263
12 H -0.291 1.291
13 H -0.266 1.266
14 C 0.497 3.503
15 O -0.583 6.583
16 C 0.134 3.866
17 C -0.156 4.156
18 C -0.039 4.039
19 C -0.178 4.178
20 C 0.279 3.721
21 F -0.119 7.119
22 N -0.469 5.469
23 H 0.082 0.918
24 H 0.053 0.947
25 H 0.033 0.967
26 H 0.071 0.929
27 H 0.028 0.972
28 H 0.119 0.881
29 H 0.074 0.926
30 H 0.263 0.737
31 H 0.133 0.867
32 H 0.190 0.810
33 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.235 -4.430 10.613 14.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.306 6.306
3 C -0.005 4.005
4 C -0.041 4.041
5 N -0.153 5.153
6 C -0.491 4.491
7 H 0.106 0.894
8 C -0.195 4.195
9 N -0.489 5.489
10 Si 0.805 3.195
11 H -0.188 1.188
12 H -0.217 1.217
13 H -0.190 1.190
14 C 0.286 3.714
15 O -0.465 6.465
16 C -0.003 4.003
17 C -0.178 4.178
18 C -0.064 4.064
19 C -0.199 4.199
20 C 0.124 3.876
21 F -0.098 7.098
22 N -0.188 5.188
23 H 0.100 0.900
24 H 0.071 0.929
25 H 0.051 0.949
26 H 0.089 0.911
27 H 0.047 0.953
28 H 0.135 0.865
29 H 0.092 0.908
30 H 0.073 0.927
31 H 0.151 0.849
32 H 0.207 0.793
33 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -7.965 -4.029 10.077 13.461
hybrid contribution 0.082 0.128 -0.863 0.876
sum -7.882 -3.901 9.214 12.737
Atomic orbital electron populations
1.22782 0.81728 1.02505 1.00001 1.88108 1.19302 1.28022 1.95168
1.22673 0.94043 0.84557 0.99195 1.22528 0.93042 0.99238 0.89320
1.43332 1.55917 1.04076 1.11983 1.19534 1.15923 1.05788 1.07861
0.89393 1.26118 0.94226 0.96235 1.02956 1.69948 1.10195 1.30314
1.38397 0.85131 0.78662 0.77469 0.78204 1.18769 1.21717 1.19005
1.17836 0.83759 0.82871 0.86935 1.90536 1.52859 1.73346 1.29721
1.21083 0.95652 0.93003 0.90550 1.22165 1.01060 0.93116 1.01460
1.21791 0.92742 1.02254 0.89596 1.22231 1.03483 0.92232 1.01998
1.18698 0.97332 0.88882 0.82731 1.91580 1.87310 1.84490 1.46397
1.67342 1.12403 1.39781 0.99228 0.89951 0.92870 0.94851 0.91140
0.95328 0.86455 0.90788 0.92736 0.84942 0.79327 0.79794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.77 11.01 113.37 1.25 2.02 16
2 O -0.39 -14.86 6.88 -148.98 -1.02 -15.88 16
3 C 0.07 2.72 6.19 71.98 0.45 3.17 16
4 C 0.08 3.59 5.65 86.38 0.49 4.08 16
5 N -0.44 -23.57 2.56 -638.68 -1.63 -25.20 16
6 C -0.36 -20.84 9.29 84.13 0.78 -20.05 16
7 H 0.09 4.76 7.90 -2.91 -0.02 4.73 16
8 C 0.01 0.70 4.37 84.98 0.37 1.07 16
9 N -0.85 -52.69 11.21 21.69 0.24 -52.45 16
10 Si 0.98 45.95 29.60 68.60 2.03 47.98 16
11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16
12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
14 C 0.50 27.78 6.43 86.83 0.56 28.34 16
15 O -0.58 -36.92 13.65 -3.94 -0.05 -36.97 16
16 C 0.13 6.04 5.92 41.84 0.25 6.29 16
17 C -0.16 -5.82 9.63 22.62 0.22 -5.60 16
18 C -0.04 -0.97 10.16 22.43 0.23 -0.74 16
19 C -0.18 -4.24 10.09 22.50 0.23 -4.01 16
20 C 0.28 8.86 8.41 84.86 0.71 9.58 16
21 F -0.12 -3.51 17.29 44.97 0.78 -2.74 16
22 N -0.47 -18.57 3.52 -186.01 -0.65 -19.22 16
23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.12 5.15 4.86 -23.90 -0.12 5.03 16
29 H 0.07 3.06 8.00 -2.39 -0.02 3.05 16
30 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16
31 H 0.13 5.21 7.65 -2.91 -0.02 5.19 16
32 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16
33 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16
Total: -1.00 -75.94 286.71 6.24 -69.71
By element:
Atomic # 1 Polarization: 9.61 SS G_CDS: 1.03 Total: 10.64 kcal
Atomic # 6 Polarization: 18.61 SS G_CDS: 5.53 Total: 24.13 kcal
Atomic # 7 Polarization: -94.82 SS G_CDS: -2.05 Total: -96.87 kcal
Atomic # 8 Polarization: -51.78 SS G_CDS: -1.08 Total: -52.86 kcal
Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.74 kcal
Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal
Total: -75.94 6.24 -69.71 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000316502989.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.142 kcal
(2) G-P(sol) polarization free energy of solvation -75.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds