Wall clock time and date at job start Mon Mar 30 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47348 * 2 1 4 4 C 1.47200 * 109.47481 * 239.99716 * 2 1 3 5 5 N 2.60801 * 109.47293 * 239.99959 * 2 1 3 6 6 C 1.53002 * 109.47076 * 120.00012 * 2 1 3 7 7 N 1.46509 * 109.46879 * 294.07189 * 6 2 1 8 8 C 1.34767 * 119.99799 * 98.09792 * 7 6 2 9 9 O 1.21288 * 120.00065 * 186.33787 * 8 7 6 10 10 C 1.50696 * 120.00515 * 6.05697 * 8 7 6 11 11 S 1.81000 * 109.47416 * 172.82100 * 10 8 7 12 12 C 1.76207 * 100.00064 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99605 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99884 * 179.97438 * 12 11 10 15 15 N 1.31628 * 120.00322 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99856 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47160 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46781 * 120.00448 * 16 14 12 19 19 H 1.48494 * 109.46974 * 240.00355 * 16 14 12 20 20 C 1.46498 * 119.99712 * 278.09377 * 7 6 2 21 21 C 1.53004 * 117.49553 * 197.20135 * 20 7 6 22 22 C 1.53000 * 117.49640 * 128.58016 * 20 7 6 23 23 H 1.09003 * 109.46991 * 53.48521 * 1 2 3 24 24 H 1.08998 * 109.47366 * 173.48043 * 1 2 3 25 25 H 1.08998 * 109.47333 * 293.47954 * 1 2 3 26 26 H 1.08992 * 109.47443 * 174.07205 * 6 2 1 27 27 H 1.08995 * 109.47099 * 54.06735 * 6 2 1 28 28 H 1.09002 * 109.47319 * 292.81793 * 10 8 7 29 29 H 1.08998 * 109.47459 * 52.81821 * 10 8 7 30 30 H 0.97000 * 120.00176 * 179.97438 * 15 14 12 31 31 H 1.08997 * 115.55285 * 342.90323 * 20 7 6 32 32 H 1.08994 * 117.49775 * 359.97438 * 21 20 7 33 33 H 1.09000 * 117.50148 * 145.02499 * 21 20 7 34 34 H 1.09001 * 117.49584 * 214.97567 * 22 20 7 35 35 H 1.08995 * 117.50005 * 359.96815 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 7 1.6715 0.0469 2.4412 8 6 0.5802 -0.2965 3.1534 9 8 0.2091 0.4049 4.0706 10 6 -0.1830 -1.5487 2.8061 11 16 -1.4542 -1.8478 4.0594 12 6 -2.1697 -3.3268 3.4227 13 1 -1.7892 -3.7612 2.5101 14 6 -3.2223 -3.9333 4.0940 15 7 -3.6864 -3.4034 5.2060 16 14 -3.9814 -5.5009 3.4186 17 1 -3.2846 -5.8884 2.1658 18 1 -3.8420 -6.5893 4.4191 19 1 -5.4206 -5.2712 3.1343 20 6 2.4896 1.1881 2.8588 21 6 2.3141 1.6965 4.2913 22 6 1.7722 2.5146 3.1173 23 1 -0.3633 0.6115 -0.8260 24 1 -0.3634 -1.0210 -0.1167 25 1 -0.3634 0.4094 0.9425 26 1 3.1247 -0.8141 1.1978 27 1 1.5925 -1.7136 1.3039 28 1 -0.6554 -1.4278 1.8312 29 1 0.5028 -2.3954 2.7749 30 1 -4.4222 -3.8271 5.6749 31 1 3.4897 1.2325 2.4278 32 1 1.5897 1.1820 4.9226 33 1 3.1989 2.0754 4.8028 34 1 2.3005 3.4316 2.8566 35 1 0.6917 2.5382 2.9761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338293673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:23 Heat of formation + Delta-G solvation = 27.136156 kcal Electronic energy + Delta-G solvation = -18143.535844 eV Core-core repulsion = 15269.502742 eV Total energy + Delta-G solvation = -2874.033102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37003 -37.59483 -36.22682 -35.29734 -32.46661 -32.19531 -29.29247 -26.73493 -25.52858 -23.39326 -22.79368 -22.25174 -19.04710 -17.94585 -17.57864 -16.77257 -16.26970 -15.52645 -14.92575 -14.83579 -14.47204 -14.15794 -13.87988 -13.47516 -13.24101 -12.96382 -12.67772 -12.65756 -12.53819 -12.40430 -11.81582 -11.69505 -11.32811 -11.13428 -11.08989 -11.01074 -10.89432 -10.77754 -10.30881 -9.83276 -9.15603 -9.10660 -8.41277 -8.26946 -6.54577 -6.25741 -3.96549 2.42106 2.57189 2.75753 2.85306 3.19361 3.21798 3.28470 3.47357 3.76885 3.99294 4.16371 4.43606 4.63741 4.69919 4.89996 4.92261 5.09648 5.10186 5.15347 5.24377 5.36731 5.50598 5.57865 5.63031 5.71265 5.79171 5.81172 5.96109 6.13098 6.14885 6.44289 6.79361 7.32428 7.38854 7.56478 8.31540 8.43475 9.20307 10.81639 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.005778 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.703747 B = 4844.673417 C = 6143.905552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.013 4.013 3 H 0.119 0.881 4 C 0.215 3.785 5 N -0.433 5.433 6 C 0.120 3.880 7 N -0.591 5.591 8 C 0.537 3.463 9 O -0.501 6.501 10 C -0.162 4.162 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.917 3.083 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.068 3.932 21 C -0.190 4.190 22 C -0.187 4.187 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.268 0.732 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.040 8.872 -7.441 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.036 4.036 3 H 0.136 0.864 4 C -0.104 4.104 5 N -0.109 5.109 6 C -0.006 4.006 7 N -0.324 5.324 8 C 0.326 3.674 9 O -0.375 6.375 10 C -0.312 4.312 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.743 3.257 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.036 4.036 21 C -0.227 4.227 22 C -0.226 4.226 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.006 9.003 -7.255 16.668 hybrid contribution -0.242 -1.515 -1.340 2.037 sum 11.764 7.488 -8.594 16.381 Atomic orbital electron populations 1.21984 0.91324 1.03776 1.04027 1.19349 0.98070 0.99705 0.86430 0.86356 1.29006 0.93239 0.93679 0.94458 1.81238 1.09109 1.09213 1.11347 1.21521 1.01248 0.95506 0.82281 1.47284 1.27204 1.31022 1.26857 1.20377 0.79184 0.86463 0.81413 1.90579 1.65285 1.52294 1.29366 1.23806 1.03241 0.96944 1.07235 1.85382 1.35207 1.33311 1.29350 1.22882 1.21264 1.11078 1.13069 0.90882 1.24975 0.95825 0.97978 0.94683 1.70016 1.25385 1.39148 1.15664 0.86143 0.78945 0.81678 0.78913 1.19605 1.20555 1.20539 1.21644 0.94797 0.86559 1.00597 1.23790 1.03946 1.03004 0.92003 1.23259 1.01540 0.94039 1.03738 0.91347 0.91081 0.90027 0.89562 0.88318 0.88438 0.89372 0.92205 0.85636 0.84480 0.89493 0.89026 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.75 37.16 0.29 -1.16 16 2 C -0.01 -0.10 2.94 -93.41 -0.27 -0.38 16 3 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 4 C 0.21 2.18 14.64 -20.76 -0.30 1.88 16 5 N -0.43 -5.65 18.54 42.15 0.78 -4.87 16 6 C 0.12 1.07 4.89 -4.04 -0.02 1.05 16 7 N -0.59 -6.91 2.61 -166.11 -0.43 -7.35 16 8 C 0.54 8.79 6.09 -10.99 -0.07 8.73 16 9 O -0.50 -9.84 11.61 5.55 0.06 -9.77 16 10 C -0.16 -2.96 4.49 36.00 0.16 -2.80 16 11 S -0.06 -1.51 20.59 -107.50 -2.21 -3.72 16 12 C -0.53 -14.62 9.50 30.94 0.29 -14.33 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.45 13.22 55.49 0.73 -24.71 16 16 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.07 0.70 6.62 -67.93 -0.45 0.25 16 21 C -0.19 -2.32 9.63 -26.73 -0.26 -2.58 16 22 C -0.19 -2.04 9.86 -26.73 -0.26 -2.30 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.73 7.35 -51.93 -0.38 0.35 16 25 H 0.08 0.92 5.94 -51.93 -0.31 0.61 16 26 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.10 0.95 6.02 -51.93 -0.31 0.63 16 28 H 0.10 1.62 5.37 -51.91 -0.28 1.34 16 29 H 0.09 1.51 7.31 -51.92 -0.38 1.13 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 2.21 5.29 -51.98 -0.27 1.93 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.32 7.52 -51.93 -0.39 0.93 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -32.80 309.08 -6.83 -39.62 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.41 Total: -0.12 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.99 Total: -9.66 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 1.08 Total: -36.93 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.80 -6.83 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338293673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.761 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds