Wall clock time and date at job start Mon Mar 30 2020 05:24:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08997 * 109.47348 * 2 1
4 4 C 1.47200 * 109.47481 * 239.99716 * 2 1 3
5 5 N 2.60801 * 109.47293 * 239.99959 * 2 1 3
6 6 C 1.53002 * 109.47076 * 120.00012 * 2 1 3
7 7 N 1.46509 * 109.46879 * 294.07189 * 6 2 1
8 8 C 1.34767 * 119.99799 * 98.09792 * 7 6 2
9 9 O 1.21288 * 120.00065 * 186.33787 * 8 7 6
10 10 C 1.50696 * 120.00515 * 6.05697 * 8 7 6
11 11 S 1.81000 * 109.47416 * 172.82100 * 10 8 7
12 12 C 1.76207 * 100.00064 * 180.02562 * 11 10 8
13 13 H 1.07996 * 119.99605 * 359.97438 * 12 11 10
14 14 C 1.38797 * 119.99884 * 179.97438 * 12 11 10
15 15 N 1.31628 * 120.00322 * 0.02562 * 14 12 11
16 16 Si 1.86806 * 119.99856 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.47160 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.46781 * 120.00448 * 16 14 12
19 19 H 1.48494 * 109.46974 * 240.00355 * 16 14 12
20 20 C 1.46498 * 119.99712 * 278.09377 * 7 6 2
21 21 C 1.53004 * 117.49553 * 197.20135 * 20 7 6
22 22 C 1.53000 * 117.49640 * 128.58016 * 20 7 6
23 23 H 1.09003 * 109.46991 * 53.48521 * 1 2 3
24 24 H 1.08998 * 109.47366 * 173.48043 * 1 2 3
25 25 H 1.08998 * 109.47333 * 293.47954 * 1 2 3
26 26 H 1.08992 * 109.47443 * 174.07205 * 6 2 1
27 27 H 1.08995 * 109.47099 * 54.06735 * 6 2 1
28 28 H 1.09002 * 109.47319 * 292.81793 * 10 8 7
29 29 H 1.08998 * 109.47459 * 52.81821 * 10 8 7
30 30 H 0.97000 * 120.00176 * 179.97438 * 15 14 12
31 31 H 1.08997 * 115.55285 * 342.90323 * 20 7 6
32 32 H 1.08994 * 117.49775 * 359.97438 * 21 20 7
33 33 H 1.09000 * 117.50148 * 145.02499 * 21 20 7
34 34 H 1.09001 * 117.49584 * 214.97567 * 22 20 7
35 35 H 1.08995 * 117.50005 * 359.96815 * 22 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0207 -0.6940 -1.2018
5 7 2.3994 -1.2294 -2.1294
6 6 2.0400 -0.7213 1.2493
7 7 1.6715 0.0469 2.4412
8 6 0.5802 -0.2965 3.1534
9 8 0.2091 0.4049 4.0706
10 6 -0.1830 -1.5487 2.8061
11 16 -1.4542 -1.8478 4.0594
12 6 -2.1697 -3.3268 3.4227
13 1 -1.7892 -3.7612 2.5101
14 6 -3.2223 -3.9333 4.0940
15 7 -3.6864 -3.4034 5.2060
16 14 -3.9814 -5.5009 3.4186
17 1 -3.2846 -5.8884 2.1658
18 1 -3.8420 -6.5893 4.4191
19 1 -5.4206 -5.2712 3.1343
20 6 2.4896 1.1881 2.8588
21 6 2.3141 1.6965 4.2913
22 6 1.7722 2.5146 3.1173
23 1 -0.3633 0.6115 -0.8260
24 1 -0.3634 -1.0210 -0.1167
25 1 -0.3634 0.4094 0.9425
26 1 3.1247 -0.8141 1.1978
27 1 1.5925 -1.7136 1.3039
28 1 -0.6554 -1.4278 1.8312
29 1 0.5028 -2.3954 2.7749
30 1 -4.4222 -3.8271 5.6749
31 1 3.4897 1.2325 2.4278
32 1 1.5897 1.1820 4.9226
33 1 3.1989 2.0754 4.8028
34 1 2.3005 3.4316 2.8566
35 1 0.6917 2.5382 2.9761
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000338293673.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:23
Heat of formation + Delta-G solvation = 27.136156 kcal
Electronic energy + Delta-G solvation = -18143.535844 eV
Core-core repulsion = 15269.502742 eV
Total energy + Delta-G solvation = -2874.033102 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.37003 -37.59483 -36.22682 -35.29734 -32.46661 -32.19531 -29.29247 -26.73493
-25.52858 -23.39326 -22.79368 -22.25174 -19.04710 -17.94585 -17.57864 -16.77257
-16.26970 -15.52645 -14.92575 -14.83579 -14.47204 -14.15794 -13.87988 -13.47516
-13.24101 -12.96382 -12.67772 -12.65756 -12.53819 -12.40430 -11.81582 -11.69505
-11.32811 -11.13428 -11.08989 -11.01074 -10.89432 -10.77754 -10.30881 -9.83276
-9.15603 -9.10660 -8.41277 -8.26946 -6.54577 -6.25741 -3.96549 2.42106
2.57189 2.75753 2.85306 3.19361 3.21798 3.28470 3.47357 3.76885
3.99294 4.16371 4.43606 4.63741 4.69919 4.89996 4.92261 5.09648
5.10186 5.15347 5.24377 5.36731 5.50598 5.57865 5.63031 5.71265
5.79171 5.81172 5.96109 6.13098 6.14885 6.44289 6.79361 7.32428
7.38854 7.56478 8.31540 8.43475 9.20307 10.81639
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.017709 B = 0.005778 C = 0.004556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1580.703747 B = 4844.673417 C = 6143.905552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.013 4.013
3 H 0.119 0.881
4 C 0.215 3.785
5 N -0.433 5.433
6 C 0.120 3.880
7 N -0.591 5.591
8 C 0.537 3.463
9 O -0.501 6.501
10 C -0.162 4.162
11 S -0.059 6.059
12 C -0.535 4.535
13 H 0.073 0.927
14 C 0.075 3.925
15 N -0.867 5.867
16 Si 0.917 3.083
17 H -0.272 1.272
18 H -0.280 1.280
19 H -0.280 1.280
20 C 0.068 3.932
21 C -0.190 4.190
22 C -0.187 4.187
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.081 0.919
26 H 0.086 0.914
27 H 0.099 0.901
28 H 0.098 0.902
29 H 0.088 0.912
30 H 0.268 0.732
31 H 0.126 0.874
32 H 0.138 0.862
33 H 0.087 0.913
34 H 0.091 0.909
35 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.040 8.872 -7.441 16.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.036 4.036
3 H 0.136 0.864
4 C -0.104 4.104
5 N -0.109 5.109
6 C -0.006 4.006
7 N -0.324 5.324
8 C 0.326 3.674
9 O -0.375 6.375
10 C -0.312 4.312
11 S 0.167 5.833
12 C -0.683 4.683
13 H 0.091 0.909
14 C -0.135 4.135
15 N -0.502 5.502
16 Si 0.743 3.257
17 H -0.196 1.196
18 H -0.206 1.206
19 H -0.205 1.205
20 C -0.036 4.036
21 C -0.227 4.227
22 C -0.226 4.226
23 H 0.087 0.913
24 H 0.089 0.911
25 H 0.100 0.900
26 H 0.104 0.896
27 H 0.117 0.883
28 H 0.116 0.884
29 H 0.106 0.894
30 H 0.078 0.922
31 H 0.144 0.856
32 H 0.155 0.845
33 H 0.105 0.895
34 H 0.110 0.890
35 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 12.006 9.003 -7.255 16.668
hybrid contribution -0.242 -1.515 -1.340 2.037
sum 11.764 7.488 -8.594 16.381
Atomic orbital electron populations
1.21984 0.91324 1.03776 1.04027 1.19349 0.98070 0.99705 0.86430
0.86356 1.29006 0.93239 0.93679 0.94458 1.81238 1.09109 1.09213
1.11347 1.21521 1.01248 0.95506 0.82281 1.47284 1.27204 1.31022
1.26857 1.20377 0.79184 0.86463 0.81413 1.90579 1.65285 1.52294
1.29366 1.23806 1.03241 0.96944 1.07235 1.85382 1.35207 1.33311
1.29350 1.22882 1.21264 1.11078 1.13069 0.90882 1.24975 0.95825
0.97978 0.94683 1.70016 1.25385 1.39148 1.15664 0.86143 0.78945
0.81678 0.78913 1.19605 1.20555 1.20539 1.21644 0.94797 0.86559
1.00597 1.23790 1.03946 1.03004 0.92003 1.23259 1.01540 0.94039
1.03738 0.91347 0.91081 0.90027 0.89562 0.88318 0.88438 0.89372
0.92205 0.85636 0.84480 0.89493 0.89026 0.88200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.45 7.75 37.16 0.29 -1.16 16
2 C -0.01 -0.10 2.94 -93.41 -0.27 -0.38 16
3 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16
4 C 0.21 2.18 14.64 -20.76 -0.30 1.88 16
5 N -0.43 -5.65 18.54 42.15 0.78 -4.87 16
6 C 0.12 1.07 4.89 -4.04 -0.02 1.05 16
7 N -0.59 -6.91 2.61 -166.11 -0.43 -7.35 16
8 C 0.54 8.79 6.09 -10.99 -0.07 8.73 16
9 O -0.50 -9.84 11.61 5.55 0.06 -9.77 16
10 C -0.16 -2.96 4.49 36.00 0.16 -2.80 16
11 S -0.06 -1.51 20.59 -107.50 -2.21 -3.72 16
12 C -0.53 -14.62 9.50 30.94 0.29 -14.33 16
13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16
14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16
15 N -0.87 -25.45 13.22 55.49 0.73 -24.71 16
16 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16
17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16
20 C 0.07 0.70 6.62 -67.93 -0.45 0.25 16
21 C -0.19 -2.32 9.63 -26.73 -0.26 -2.58 16
22 C -0.19 -2.04 9.86 -26.73 -0.26 -2.30 16
23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.07 0.73 7.35 -51.93 -0.38 0.35 16
25 H 0.08 0.92 5.94 -51.93 -0.31 0.61 16
26 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16
27 H 0.10 0.95 6.02 -51.93 -0.31 0.63 16
28 H 0.10 1.62 5.37 -51.91 -0.28 1.34 16
29 H 0.09 1.51 7.31 -51.92 -0.38 1.13 16
30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16
31 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.14 2.21 5.29 -51.98 -0.27 1.93 16
33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
35 H 0.10 1.32 7.52 -51.93 -0.39 0.93 16
LS Contribution 309.08 15.07 4.66 4.66
Total: -1.00 -32.80 309.08 -6.83 -39.62
By element:
Atomic # 1 Polarization: 4.29 SS G_CDS: -4.41 Total: -0.12 kcal
Atomic # 6 Polarization: -8.68 SS G_CDS: -0.99 Total: -9.66 kcal
Atomic # 7 Polarization: -38.01 SS G_CDS: 1.08 Total: -36.93 kcal
Atomic # 8 Polarization: -9.84 SS G_CDS: 0.06 Total: -9.77 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -32.80 -6.83 -39.62 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338293673.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.761 kcal
(2) G-P(sol) polarization free energy of solvation -32.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.963 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.136 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds