Wall clock time and date at job start Mon Mar 30 2020 05:24:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08997 * 109.47348 * 2 1
4 4 C 1.47200 * 109.47481 * 239.99716 * 2 1 3
5 5 N 2.60801 * 109.47293 * 239.99959 * 2 1 3
6 6 C 1.53002 * 109.47076 * 120.00012 * 2 1 3
7 7 N 1.46509 * 109.46879 * 294.07189 * 6 2 1
8 8 C 1.34767 * 119.99799 * 98.09792 * 7 6 2
9 9 O 1.21288 * 120.00065 * 186.33787 * 8 7 6
10 10 C 1.50696 * 120.00515 * 6.05697 * 8 7 6
11 11 S 1.81000 * 109.47416 * 172.82100 * 10 8 7
12 12 C 1.76207 * 100.00064 * 180.02562 * 11 10 8
13 13 H 1.07996 * 119.99605 * 359.97438 * 12 11 10
14 14 C 1.38797 * 119.99884 * 179.97438 * 12 11 10
15 15 N 1.31628 * 120.00322 * 0.02562 * 14 12 11
16 16 Si 1.86806 * 119.99856 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.47160 * 0.02562 * 16 14 12
18 18 H 1.48497 * 109.46781 * 120.00448 * 16 14 12
19 19 H 1.48494 * 109.46974 * 240.00355 * 16 14 12
20 20 C 1.46498 * 119.99712 * 278.09377 * 7 6 2
21 21 C 1.53004 * 117.49553 * 197.20135 * 20 7 6
22 22 C 1.53000 * 117.49640 * 128.58016 * 20 7 6
23 23 H 1.09003 * 109.46991 * 53.48521 * 1 2 3
24 24 H 1.08998 * 109.47366 * 173.48043 * 1 2 3
25 25 H 1.08998 * 109.47333 * 293.47954 * 1 2 3
26 26 H 1.08992 * 109.47443 * 174.07205 * 6 2 1
27 27 H 1.08995 * 109.47099 * 54.06735 * 6 2 1
28 28 H 1.09002 * 109.47319 * 292.81793 * 10 8 7
29 29 H 1.08998 * 109.47459 * 52.81821 * 10 8 7
30 30 H 0.97000 * 120.00176 * 179.97438 * 15 14 12
31 31 H 1.08997 * 115.55285 * 342.90323 * 20 7 6
32 32 H 1.08994 * 117.49775 * 359.97438 * 21 20 7
33 33 H 1.09000 * 117.50148 * 145.02499 * 21 20 7
34 34 H 1.09001 * 117.49584 * 214.97567 * 22 20 7
35 35 H 1.08995 * 117.50005 * 359.96815 * 22 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0207 -0.6940 -1.2018
5 7 2.3994 -1.2294 -2.1294
6 6 2.0400 -0.7213 1.2493
7 7 1.6715 0.0469 2.4412
8 6 0.5802 -0.2965 3.1534
9 8 0.2091 0.4049 4.0706
10 6 -0.1830 -1.5487 2.8061
11 16 -1.4542 -1.8478 4.0594
12 6 -2.1697 -3.3268 3.4227
13 1 -1.7892 -3.7612 2.5101
14 6 -3.2223 -3.9333 4.0940
15 7 -3.6864 -3.4034 5.2060
16 14 -3.9814 -5.5009 3.4186
17 1 -3.2846 -5.8884 2.1658
18 1 -3.8420 -6.5893 4.4191
19 1 -5.4206 -5.2712 3.1343
20 6 2.4896 1.1881 2.8588
21 6 2.3141 1.6965 4.2913
22 6 1.7722 2.5146 3.1173
23 1 -0.3633 0.6115 -0.8260
24 1 -0.3634 -1.0210 -0.1167
25 1 -0.3634 0.4094 0.9425
26 1 3.1247 -0.8141 1.1978
27 1 1.5925 -1.7136 1.3039
28 1 -0.6554 -1.4278 1.8312
29 1 0.5028 -2.3954 2.7749
30 1 -4.4222 -3.8271 5.6749
31 1 3.4897 1.2325 2.4278
32 1 1.5897 1.1820 4.9226
33 1 3.1989 2.0754 4.8028
34 1 2.3005 3.4316 2.8566
35 1 0.6917 2.5382 2.9761
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000338293673.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:24:23
Heat of formation + Delta-G solvation = 6.758974 kcal
Electronic energy + Delta-G solvation = -18144.419465 eV
Core-core repulsion = 15269.502742 eV
Total energy + Delta-G solvation = -2874.916723 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.47927 -38.51315 -37.29654 -36.20697 -34.56575 -33.14216 -30.68562 -27.72479
-27.50036 -24.24349 -23.80440 -23.14809 -20.43736 -19.32005 -18.69333 -17.85341
-17.35467 -16.86538 -16.65148 -15.96960 -15.75505 -15.35258 -14.95177 -14.58319
-14.51569 -14.18754 -13.90872 -13.71618 -13.57419 -13.37700 -13.12578 -12.93446
-12.72295 -12.62310 -12.57082 -12.17893 -11.90033 -11.78322 -11.66270 -11.15308
-11.13371 -10.42998 -10.21286 -9.41304 -8.61905 -8.33393 -6.09504 1.26516
1.40958 1.45122 1.48486 1.56079 1.75482 1.78385 2.06540 2.28749
2.90438 3.01209 3.12924 3.29927 3.63045 3.81099 3.90328 4.11690
4.20375 4.22883 4.26714 4.32617 4.50539 4.53416 4.69671 4.78823
4.82969 4.97847 5.01652 5.21654 5.27717 5.44281 5.51427 5.81541
6.21546 6.28072 6.55105 7.09063 7.21022 8.75752
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.017709 B = 0.005778 C = 0.004556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1580.703747 B = 4844.673417 C = 6143.905552
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.002 3.998
3 H 0.151 0.849
4 C 0.245 3.755
5 N -0.482 5.482
6 C 0.113 3.887
7 N -0.576 5.576
8 C 0.537 3.463
9 O -0.541 6.541
10 C -0.137 4.137
11 S -0.146 6.146
12 C -0.543 4.543
13 H 0.081 0.919
14 C 0.016 3.984
15 N -0.910 5.910
16 Si 0.992 3.008
17 H -0.258 1.258
18 H -0.275 1.275
19 H -0.275 1.275
20 C 0.081 3.919
21 C -0.212 4.212
22 C -0.181 4.181
23 H 0.082 0.918
24 H 0.059 0.941
25 H 0.062 0.938
26 H 0.123 0.877
27 H 0.091 0.909
28 H 0.114 0.886
29 H 0.103 0.897
30 H 0.270 0.730
31 H 0.175 0.825
32 H 0.093 0.907
33 H 0.110 0.890
34 H 0.124 0.876
35 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.090 8.962 -9.545 19.235
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.021 4.021
3 H 0.168 0.832
4 C -0.073 4.073
5 N -0.159 5.159
6 C -0.011 4.011
7 N -0.307 5.307
8 C 0.325 3.675
9 O -0.418 6.418
10 C -0.288 4.288
11 S 0.081 5.919
12 C -0.691 4.691
13 H 0.099 0.901
14 C -0.189 4.189
15 N -0.547 5.547
16 Si 0.815 3.185
17 H -0.182 1.182
18 H -0.200 1.200
19 H -0.200 1.200
20 C -0.023 4.023
21 C -0.250 4.250
22 C -0.219 4.219
23 H 0.101 0.899
24 H 0.078 0.922
25 H 0.081 0.919
26 H 0.141 0.859
27 H 0.110 0.890
28 H 0.132 0.868
29 H 0.121 0.879
30 H 0.079 0.921
31 H 0.192 0.808
32 H 0.111 0.889
33 H 0.128 0.872
34 H 0.142 0.858
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 14.091 9.098 -9.393 19.224
hybrid contribution -0.809 -1.451 -0.698 1.802
sum 13.283 7.647 -10.091 18.351
Atomic orbital electron populations
1.21965 0.92569 1.03266 1.03591 1.19332 0.96774 1.00968 0.85014
0.83195 1.29134 0.91859 0.92376 0.93953 1.81287 1.10786 1.10852
1.12935 1.21790 1.03522 0.94704 0.81122 1.47178 1.25456 1.31365
1.26725 1.20037 0.80319 0.85613 0.81529 1.90612 1.66688 1.53220
1.31264 1.23663 1.01309 0.98920 1.04944 1.85517 1.38830 1.33723
1.33826 1.23208 1.21424 1.11231 1.13198 0.90115 1.26031 0.96341
1.01624 0.94867 1.70174 1.26163 1.41051 1.17289 0.84995 0.77975
0.76985 0.78577 1.18203 1.20038 1.20021 1.22097 0.96071 0.85122
0.98971 1.23648 1.04132 1.04441 0.92742 1.23235 1.00194 0.95677
1.02823 0.89938 0.92153 0.91867 0.85880 0.89049 0.86789 0.87914
0.92066 0.80752 0.88924 0.87198 0.85821 0.91252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.63 7.75 71.98 0.56 -2.07 16
2 C 0.00 0.02 2.94 -12.60 -0.04 -0.02 16
3 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16
4 C 0.24 4.20 14.64 89.44 1.31 5.51 16
5 N -0.48 -11.51 18.54 20.01 0.37 -11.14 16
6 C 0.11 1.57 4.89 86.38 0.42 2.00 16
7 N -0.58 -12.02 2.61 -797.84 -2.08 -14.10 16
8 C 0.54 17.48 6.09 87.66 0.53 18.01 16
9 O -0.54 -22.07 11.61 -3.05 -0.04 -22.10 16
10 C -0.14 -5.02 4.49 71.23 0.32 -4.70 16
11 S -0.15 -7.75 20.59 -56.49 -1.16 -8.91 16
12 C -0.54 -30.11 9.50 67.95 0.65 -29.46 16
13 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16
14 C 0.02 0.91 5.49 84.86 0.47 1.38 16
15 N -0.91 -54.93 13.22 21.65 0.29 -54.64 16
16 Si 0.99 43.07 29.55 68.60 2.03 45.10 16
17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16
18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
20 C 0.08 1.37 6.62 44.99 0.30 1.67 16
21 C -0.21 -4.91 9.63 30.60 0.29 -4.62 16
22 C -0.18 -3.54 9.86 30.60 0.30 -3.24 16
23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
24 H 0.06 1.15 7.35 -2.39 -0.02 1.13 16
25 H 0.06 1.35 5.94 -2.39 -0.01 1.34 16
26 H 0.12 0.96 8.12 -2.39 -0.02 0.94 16
27 H 0.09 1.47 6.02 -2.39 -0.01 1.46 16
28 H 0.11 3.76 5.37 -2.39 -0.01 3.74 16
29 H 0.10 3.43 7.31 -2.40 -0.02 3.41 16
30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
31 H 0.18 1.39 8.14 -2.39 -0.02 1.37 16
32 H 0.09 3.11 5.29 -3.08 -0.02 3.09 16
33 H 0.11 1.98 8.14 -2.39 -0.02 1.97 16
34 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16
35 H 0.07 1.82 7.52 -2.39 -0.02 1.80 16
Total: -1.00 -76.01 309.08 5.62 -70.39
By element:
Atomic # 1 Polarization: 9.86 SS G_CDS: 1.10 Total: 10.96 kcal
Atomic # 6 Polarization: -20.67 SS G_CDS: 5.11 Total: -15.56 kcal
Atomic # 7 Polarization: -78.45 SS G_CDS: -1.42 Total: -79.87 kcal
Atomic # 8 Polarization: -22.07 SS G_CDS: -0.04 Total: -22.10 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal
Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal
Total: -76.01 5.62 -70.39 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000338293673.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.146 kcal
(2) G-P(sol) polarization free energy of solvation -76.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.141 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds