Wall clock time and date at job start Mon Mar 30 2020 05:33:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42903 * 114.00148 * 2 1
4 4 C 1.50699 * 109.47429 * 179.97438 * 3 2 1
5 5 C 1.33638 * 126.03540 * 90.02265 * 4 3 2
6 6 N 1.31791 * 114.49964 * 180.02562 * 5 4 3
7 7 C 1.29025 * 117.12290 * 0.02562 * 6 5 4
8 8 C 1.50702 * 124.91704 * 179.97438 * 7 6 5
9 9 N 1.46501 * 109.46905 * 90.02057 * 8 7 6
10 10 C 1.36936 * 120.00155 * 90.00783 * 9 8 7
11 11 H 1.07997 * 120.00002 * 217.75592 * 10 9 8
12 12 C 1.38811 * 120.00190 * 37.74567 * 10 9 8
13 13 N 1.31620 * 119.99775 * 20.74643 * 12 10 9
14 14 Si 1.86795 * 120.00306 * 200.74426 * 12 10 9
15 15 H 1.48500 * 109.47432 * 59.99850 * 14 12 10
16 16 H 1.48502 * 109.47252 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.46894 * 300.00282 * 14 12 10
18 18 C 1.46505 * 119.99918 * 270.27488 * 9 8 7
19 19 C 1.53003 * 117.49623 * 193.99967 * 18 9 8
20 20 C 1.53001 * 117.49658 * 125.34271 * 18 9 8
21 21 S 1.70974 * 110.16826 * 0.22558 * 7 6 5
22 22 H 1.09002 * 109.46986 * 299.99859 * 1 2 3
23 23 H 1.09003 * 109.47244 * 60.00084 * 1 2 3
24 24 H 1.09004 * 109.46801 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.46976 * 60.00157 * 3 2 1
26 26 H 1.09000 * 109.46964 * 300.00309 * 3 2 1
27 27 H 1.07999 * 122.75492 * 0.02562 * 5 4 3
28 28 H 1.09005 * 109.46824 * 330.02423 * 8 7 6
29 29 H 1.08994 * 109.47156 * 210.02526 * 8 7 6
30 30 H 0.96998 * 120.00219 * 174.92721 * 13 12 10
31 31 H 1.08999 * 115.55234 * 339.67176 * 18 9 8
32 32 H 1.09002 * 117.50053 * 0.02562 * 19 18 9
33 33 H 1.09003 * 117.49402 * 145.02222 * 19 18 9
34 34 H 1.08998 * 117.49233 * 214.97994 * 20 18 9
35 35 H 1.09002 * 117.50127 * 359.97438 * 20 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5125 1.1865 0.0006
5 6 4.2967 1.1247 -1.0797
6 7 5.5838 1.0222 -0.8156
7 6 5.9288 0.9936 0.4273
8 6 7.3461 0.8800 0.9268
9 7 7.9152 2.2200 1.0902
10 6 7.7894 2.8762 2.2855
11 1 7.6180 3.9424 2.3008
12 6 7.8819 2.1710 3.4776
13 7 8.4785 0.9981 3.5036
14 14 7.1599 2.8866 5.0447
15 1 5.7010 3.0987 4.8657
16 1 7.3894 1.9455 6.1702
17 1 7.8157 4.1848 5.3440
18 6 8.6137 2.8604 -0.0270
19 6 9.4616 4.0953 0.2847
20 6 8.1325 4.2470 -0.4594
21 16 4.5447 1.0963 1.4258
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 3.9077 1.1562 -2.0867
28 1 7.9411 0.3179 0.2068
29 1 7.3529 0.3628 1.8862
30 1 8.6086 0.5387 4.3480
31 1 8.9725 2.1869 -0.8053
32 1 9.5000 4.4310 1.3210
33 1 10.3781 4.2343 -0.2889
34 1 8.1751 4.4856 -1.5221
35 1 7.2959 4.6825 0.0871
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000342640915.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:20
Heat of formation + Delta-G solvation = 49.237422 kcal
Electronic energy + Delta-G solvation = -18199.315223 eV
Core-core repulsion = 15326.240504 eV
Total energy + Delta-G solvation = -2873.074719 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.05603 -37.72237 -36.98713 -33.75820 -31.76102 -30.46271 -27.79086 -26.36534
-24.82409 -23.85317 -22.43978 -21.36958 -19.96175 -18.82028 -17.55426 -16.47226
-16.42303 -15.65655 -15.41817 -15.25825 -14.55567 -14.01519 -13.90166 -13.74181
-12.92067 -12.64311 -12.57244 -12.23257 -11.81584 -11.42306 -11.25088 -10.91128
-10.81513 -10.66160 -10.61478 -10.50993 -10.14633 -9.73779 -9.72749 -9.35900
-8.86805 -8.62558 -8.58849 -8.14566 -6.68254 -6.03983 -3.56656 1.31995
2.06346 2.58871 3.26205 3.33166 3.35839 3.42240 4.02277 4.30470
4.89383 4.94180 5.05809 5.14546 5.22180 5.26074 5.29849 5.33365
5.43346 5.53689 5.91423 5.94820 6.13562 6.16952 6.23793 6.48976
6.53494 6.60833 6.82402 6.96863 7.08524 7.15109 7.24647 7.66751
8.29986 8.49310 8.94013 9.55663 10.13341 10.98662
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.018620 B = 0.006662 C = 0.005451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1503.387390 B = 4202.066000 C = 5135.089008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.386 6.386
3 C 0.151 3.849
4 C -0.282 4.282
5 C 0.067 3.933
6 N -0.498 5.498
7 C 0.082 3.918
8 C 0.208 3.792
9 N -0.533 5.533
10 C -0.264 4.264
11 H 0.065 0.935
12 C 0.021 3.979
13 N -0.881 5.881
14 Si 0.895 3.105
15 H -0.275 1.275
16 H -0.286 1.286
17 H -0.278 1.278
18 C 0.131 3.869
19 C -0.192 4.192
20 C -0.223 4.223
21 S 0.134 5.866
22 H 0.040 0.960
23 H 0.040 0.960
24 H 0.085 0.915
25 H 0.056 0.944
26 H 0.063 0.937
27 H 0.160 0.840
28 H 0.063 0.937
29 H 0.119 0.881
30 H 0.263 0.737
31 H 0.093 0.907
32 H 0.099 0.901
33 H 0.075 0.925
34 H 0.073 0.927
35 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.306 -0.050 -5.336 11.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.305 6.305
3 C 0.073 3.927
4 C -0.404 4.404
5 C -0.088 4.088
6 N -0.213 5.213
7 C -0.197 4.197
8 C 0.078 3.922
9 N -0.248 5.248
10 C -0.394 4.394
11 H 0.083 0.917
12 C -0.181 4.181
13 N -0.521 5.521
14 Si 0.723 3.277
15 H -0.201 1.201
16 H -0.211 1.211
17 H -0.203 1.203
18 C 0.022 3.978
19 C -0.231 4.231
20 C -0.263 4.263
21 S 0.390 5.610
22 H 0.059 0.941
23 H 0.058 0.942
24 H 0.103 0.897
25 H 0.074 0.926
26 H 0.081 0.919
27 H 0.177 0.823
28 H 0.081 0.919
29 H 0.136 0.864
30 H 0.073 0.927
31 H 0.111 0.889
32 H 0.118 0.882
33 H 0.094 0.906
34 H 0.092 0.908
35 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -9.892 -0.439 -4.444 10.854
hybrid contribution -1.036 0.860 -0.137 1.353
sum -10.928 0.421 -4.581 11.857
Atomic orbital electron populations
1.22730 0.81340 1.02679 0.99844 1.88018 1.19220 1.27940 1.95361
1.20465 0.87019 0.84611 1.00599 1.25379 0.98878 1.19018 0.97157
1.21586 0.87969 1.00128 0.99107 1.66441 1.16482 1.19002 1.19402
1.29371 1.02780 0.97200 0.90342 1.19941 0.81755 0.88636 1.01892
1.43299 1.57282 1.15841 1.08370 1.18959 1.45178 0.93068 0.82214
0.91716 1.25237 0.97659 0.97008 0.98156 1.69843 1.40276 1.15773
1.26240 0.86466 0.80052 0.78760 0.82397 1.20110 1.21126 1.20329
1.21116 0.96960 0.87182 0.92514 1.23104 0.93086 1.05565 1.01313
1.23303 0.98062 1.06599 0.98359 1.84140 0.99089 1.66601 1.11132
0.94129 0.94154 0.89680 0.92573 0.91920 0.82256 0.91854 0.86372
0.92677 0.88942 0.88241 0.90620 0.90842 0.89969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 101.05 1.11 1.42 16
2 O -0.39 -5.61 10.69 -35.23 -0.38 -5.99 16
3 C 0.15 2.13 6.47 36.01 0.23 2.36 16
4 C -0.28 -4.97 6.23 -35.92 -0.22 -5.20 16
5 C 0.07 1.21 11.25 -19.18 -0.22 1.00 16
6 N -0.50 -10.39 10.54 -11.86 -0.13 -10.52 16
7 C 0.08 1.78 6.97 -13.46 -0.09 1.69 16
8 C 0.21 4.81 5.91 -5.19 -0.03 4.78 16
9 N -0.53 -12.81 2.77 -167.02 -0.46 -13.28 16
10 C -0.26 -6.76 8.05 -15.06 -0.12 -6.89 16
11 H 0.07 1.69 7.19 -52.49 -0.38 1.32 16
12 C 0.02 0.55 4.97 -17.43 -0.09 0.46 16
13 N -0.88 -23.50 11.44 55.49 0.63 -22.86 16
14 Si 0.90 20.45 29.61 -169.99 -5.03 15.41 16
15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
18 C 0.13 2.84 6.61 -67.93 -0.45 2.39 16
19 C -0.19 -3.82 9.81 -26.69 -0.26 -4.08 16
20 C -0.22 -4.41 10.08 -26.69 -0.27 -4.68 16
21 S 0.13 2.68 23.18 -107.50 -2.49 0.19 16
22 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16
23 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16
28 H 0.06 1.41 8.04 -51.93 -0.42 1.00 16
29 H 0.12 2.96 5.50 -51.93 -0.29 2.68 16
30 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16
31 H 0.09 1.89 8.10 -51.93 -0.42 1.47 16
32 H 0.10 2.16 6.95 -51.93 -0.36 1.80 16
33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
35 H 0.08 1.75 7.99 -51.93 -0.41 1.34 16
LS Contribution 314.05 15.07 4.73 4.73
Total: -1.00 -28.03 314.05 -8.32 -36.36
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: -4.79 Total: 2.70 kcal
Atomic # 6 Polarization: -6.34 SS G_CDS: -0.41 Total: -6.75 kcal
Atomic # 7 Polarization: -46.70 SS G_CDS: 0.05 Total: -46.65 kcal
Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal
Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal
Atomic # 16 Polarization: 2.68 SS G_CDS: -2.49 Total: 0.19 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -28.03 -8.32 -36.36 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000342640915.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.594 kcal
(2) G-P(sol) polarization free energy of solvation -28.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds