Wall clock time and date at job start Mon Mar 30 2020 05:33:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42903 * 114.00148 * 2 1
4 4 C 1.50699 * 109.47429 * 179.97438 * 3 2 1
5 5 C 1.33638 * 126.03540 * 90.02265 * 4 3 2
6 6 N 1.31791 * 114.49964 * 180.02562 * 5 4 3
7 7 C 1.29025 * 117.12290 * 0.02562 * 6 5 4
8 8 C 1.50702 * 124.91704 * 179.97438 * 7 6 5
9 9 N 1.46501 * 109.46905 * 90.02057 * 8 7 6
10 10 C 1.36936 * 120.00155 * 90.00783 * 9 8 7
11 11 H 1.07997 * 120.00002 * 217.75592 * 10 9 8
12 12 C 1.38811 * 120.00190 * 37.74567 * 10 9 8
13 13 N 1.31620 * 119.99775 * 20.74643 * 12 10 9
14 14 Si 1.86795 * 120.00306 * 200.74426 * 12 10 9
15 15 H 1.48500 * 109.47432 * 59.99850 * 14 12 10
16 16 H 1.48502 * 109.47252 * 180.02562 * 14 12 10
17 17 H 1.48498 * 109.46894 * 300.00282 * 14 12 10
18 18 C 1.46505 * 119.99918 * 270.27488 * 9 8 7
19 19 C 1.53003 * 117.49623 * 193.99967 * 18 9 8
20 20 C 1.53001 * 117.49658 * 125.34271 * 18 9 8
21 21 S 1.70974 * 110.16826 * 0.22558 * 7 6 5
22 22 H 1.09002 * 109.46986 * 299.99859 * 1 2 3
23 23 H 1.09003 * 109.47244 * 60.00084 * 1 2 3
24 24 H 1.09004 * 109.46801 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.46976 * 60.00157 * 3 2 1
26 26 H 1.09000 * 109.46964 * 300.00309 * 3 2 1
27 27 H 1.07999 * 122.75492 * 0.02562 * 5 4 3
28 28 H 1.09005 * 109.46824 * 330.02423 * 8 7 6
29 29 H 1.08994 * 109.47156 * 210.02526 * 8 7 6
30 30 H 0.96998 * 120.00219 * 174.92721 * 13 12 10
31 31 H 1.08999 * 115.55234 * 339.67176 * 18 9 8
32 32 H 1.09002 * 117.50053 * 0.02562 * 19 18 9
33 33 H 1.09003 * 117.49402 * 145.02222 * 19 18 9
34 34 H 1.08998 * 117.49233 * 214.97994 * 20 18 9
35 35 H 1.09002 * 117.50127 * 359.97438 * 20 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5125 1.1865 0.0006
5 6 4.2967 1.1247 -1.0797
6 7 5.5838 1.0222 -0.8156
7 6 5.9288 0.9936 0.4273
8 6 7.3461 0.8800 0.9268
9 7 7.9152 2.2200 1.0902
10 6 7.7894 2.8762 2.2855
11 1 7.6180 3.9424 2.3008
12 6 7.8819 2.1710 3.4776
13 7 8.4785 0.9981 3.5036
14 14 7.1599 2.8866 5.0447
15 1 5.7010 3.0987 4.8657
16 1 7.3894 1.9455 6.1702
17 1 7.8157 4.1848 5.3440
18 6 8.6137 2.8604 -0.0270
19 6 9.4616 4.0953 0.2847
20 6 8.1325 4.2470 -0.4594
21 16 4.5447 1.0963 1.4258
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 3.9077 1.1562 -2.0867
28 1 7.9411 0.3179 0.2068
29 1 7.3529 0.3628 1.8862
30 1 8.6086 0.5387 4.3480
31 1 8.9725 2.1869 -0.8053
32 1 9.5000 4.4310 1.3210
33 1 10.3781 4.2343 -0.2889
34 1 8.1751 4.4856 -1.5221
35 1 7.2959 4.6825 0.0871
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000342640915.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:20
Heat of formation + Delta-G solvation = 32.864600 kcal
Electronic energy + Delta-G solvation = -18200.025202 eV
Core-core repulsion = 15326.240504 eV
Total energy + Delta-G solvation = -2873.784698 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 268.099 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.56243 -38.90591 -38.56036 -35.51380 -33.41121 -32.03890 -29.31765 -27.46057
-26.42610 -25.33903 -23.99867 -22.96989 -21.73501 -20.31790 -19.08680 -18.24908
-17.42576 -17.29201 -16.69657 -16.38450 -16.36245 -15.70554 -15.35030 -15.27341
-14.51081 -14.31656 -13.74021 -13.49627 -13.30371 -13.07439 -12.71646 -12.63882
-12.37261 -12.32082 -12.20345 -12.07134 -11.95824 -11.49154 -10.99123 -10.71624
-10.52181 -10.42430 -10.15620 -9.68470 -8.54336 -7.95909 -5.53281 -0.19048
0.54671 1.04043 1.43287 1.47709 1.52777 1.93043 2.43777 2.99512
3.10561 3.32144 3.48960 3.61339 3.97611 4.10970 4.28368 4.35027
4.41305 4.47873 4.54226 4.56336 4.59149 4.69923 4.84912 4.85905
4.92254 5.03040 5.26003 5.31720 5.45069 5.52677 5.65604 6.16179
6.38407 6.93019 7.03289 7.69140 8.24417 9.04203
Molecular weight = 268.10amu
Principal moments of inertia in cm(-1)
A = 0.018620 B = 0.006662 C = 0.005451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1503.387390 B = 4202.066000 C = 5135.089008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.415 6.415
3 C 0.151 3.849
4 C -0.259 4.259
5 C 0.050 3.950
6 N -0.505 5.505
7 C 0.061 3.939
8 C 0.216 3.784
9 N -0.548 5.548
10 C -0.265 4.265
11 H 0.054 0.946
12 C -0.015 4.015
13 N -0.908 5.908
14 Si 0.941 3.059
15 H -0.274 1.274
16 H -0.286 1.286
17 H -0.274 1.274
18 C 0.105 3.895
19 C -0.183 4.183
20 C -0.205 4.205
21 S 0.111 5.889
22 H 0.050 0.950
23 H 0.059 0.941
24 H 0.096 0.904
25 H 0.066 0.934
26 H 0.095 0.905
27 H 0.194 0.806
28 H 0.060 0.940
29 H 0.096 0.904
30 H 0.260 0.740
31 H 0.102 0.898
32 H 0.077 0.923
33 H 0.105 0.895
34 H 0.100 0.900
35 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.133 0.656 -6.622 13.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.335 6.335
3 C 0.072 3.928
4 C -0.381 4.381
5 C -0.102 4.102
6 N -0.221 5.221
7 C -0.218 4.218
8 C 0.086 3.914
9 N -0.264 5.264
10 C -0.395 4.395
11 H 0.071 0.929
12 C -0.214 4.214
13 N -0.550 5.550
14 Si 0.768 3.232
15 H -0.199 1.199
16 H -0.211 1.211
17 H -0.200 1.200
18 C -0.003 4.003
19 C -0.221 4.221
20 C -0.246 4.246
21 S 0.367 5.633
22 H 0.069 0.931
23 H 0.078 0.922
24 H 0.115 0.885
25 H 0.084 0.916
26 H 0.112 0.888
27 H 0.211 0.789
28 H 0.079 0.921
29 H 0.114 0.886
30 H 0.070 0.930
31 H 0.120 0.880
32 H 0.095 0.905
33 H 0.123 0.877
34 H 0.118 0.882
35 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -11.731 0.282 -5.756 13.070
hybrid contribution -0.610 0.604 0.147 0.871
sum -12.341 0.886 -5.608 13.585
Atomic orbital electron populations
1.22976 0.78849 1.04021 1.01298 1.87958 1.21899 1.27938 1.95670
1.20615 0.84431 0.85128 1.02601 1.25846 1.00723 1.16285 0.95269
1.22082 0.86988 1.00340 1.00824 1.66413 1.18180 1.18456 1.19008
1.28865 1.02636 0.99338 0.90996 1.19613 0.82973 0.88204 1.00651
1.43387 1.58483 1.15880 1.08643 1.18943 1.44741 0.92677 0.83172
0.92883 1.25736 0.98113 0.97396 1.00189 1.69942 1.41840 1.16819
1.26428 0.85739 0.79412 0.78193 0.79827 1.19918 1.21130 1.19969
1.21353 0.98312 0.88052 0.92566 1.23086 0.94410 1.04040 1.00587
1.23224 0.97219 1.04584 0.99530 1.84137 0.99586 1.66822 1.12760
0.93123 0.92194 0.88526 0.91623 0.88762 0.78896 0.92138 0.88650
0.93022 0.88036 0.90491 0.87694 0.88180 0.91862
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.40 11.01 113.37 1.25 1.65 16
2 O -0.41 -10.85 10.69 -148.98 -1.59 -12.45 16
3 C 0.15 3.75 6.47 71.24 0.46 4.21 16
4 C -0.26 -8.61 6.23 24.64 0.15 -8.45 16
5 C 0.05 1.72 11.25 83.65 0.94 2.66 16
6 N -0.50 -20.63 10.54 -191.44 -2.02 -22.65 16
7 C 0.06 2.66 6.97 88.52 0.62 3.27 16
8 C 0.22 10.24 5.91 85.63 0.51 10.75 16
9 N -0.55 -26.78 2.77 -682.32 -1.89 -28.67 16
10 C -0.27 -13.85 8.05 84.03 0.68 -13.17 16
11 H 0.05 2.85 7.19 -2.91 -0.02 2.83 16
12 C -0.02 -0.79 4.97 84.86 0.42 -0.37 16
13 N -0.91 -49.79 11.44 21.65 0.25 -49.54 16
14 Si 0.94 42.46 29.61 68.60 2.03 44.49 16
15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16
16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16
17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
18 C 0.11 4.52 6.61 44.99 0.30 4.81 16
19 C -0.18 -7.10 9.81 30.62 0.30 -6.80 16
20 C -0.21 -7.88 10.08 30.62 0.31 -7.57 16
21 S 0.11 4.44 23.18 -56.49 -1.31 3.13 16
22 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
27 H 0.19 5.16 8.06 -2.91 -0.02 5.14 16
28 H 0.06 2.79 8.04 -2.38 -0.02 2.78 16
29 H 0.10 4.99 5.50 -2.39 -0.01 4.97 16
30 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16
31 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16
32 H 0.08 3.36 6.95 -2.39 -0.02 3.34 16
33 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16
34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16
35 H 0.06 2.67 7.99 -2.39 -0.02 2.65 16
Total: -1.00 -60.53 314.05 2.48 -58.05
By element:
Atomic # 1 Polarization: 15.57 SS G_CDS: 1.08 Total: 16.65 kcal
Atomic # 6 Polarization: -14.95 SS G_CDS: 5.93 Total: -9.02 kcal
Atomic # 7 Polarization: -97.20 SS G_CDS: -3.66 Total: -100.86 kcal
Atomic # 8 Polarization: -10.85 SS G_CDS: -1.59 Total: -12.45 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal
Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal
Total: -60.53 2.48 -58.05 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000342640915.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.915 kcal
(2) G-P(sol) polarization free energy of solvation -60.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds