Wall clock time and date at job start Mon Mar 30 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00148 * 2 1 4 4 C 1.50699 * 109.47429 * 179.97438 * 3 2 1 5 5 C 1.33638 * 126.03540 * 90.02265 * 4 3 2 6 6 N 1.31791 * 114.49964 * 180.02562 * 5 4 3 7 7 C 1.29025 * 117.12290 * 0.02562 * 6 5 4 8 8 C 1.50702 * 124.91704 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46905 * 90.02057 * 8 7 6 10 10 C 1.36936 * 120.00155 * 90.00783 * 9 8 7 11 11 H 1.07997 * 120.00002 * 217.75592 * 10 9 8 12 12 C 1.38811 * 120.00190 * 37.74567 * 10 9 8 13 13 N 1.31620 * 119.99775 * 20.74643 * 12 10 9 14 14 Si 1.86795 * 120.00306 * 200.74426 * 12 10 9 15 15 H 1.48500 * 109.47432 * 59.99850 * 14 12 10 16 16 H 1.48502 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46894 * 300.00282 * 14 12 10 18 18 C 1.46505 * 119.99918 * 270.27488 * 9 8 7 19 19 C 1.53003 * 117.49623 * 193.99967 * 18 9 8 20 20 C 1.53001 * 117.49658 * 125.34271 * 18 9 8 21 21 S 1.70974 * 110.16826 * 0.22558 * 7 6 5 22 22 H 1.09002 * 109.46986 * 299.99859 * 1 2 3 23 23 H 1.09003 * 109.47244 * 60.00084 * 1 2 3 24 24 H 1.09004 * 109.46801 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46976 * 60.00157 * 3 2 1 26 26 H 1.09000 * 109.46964 * 300.00309 * 3 2 1 27 27 H 1.07999 * 122.75492 * 0.02562 * 5 4 3 28 28 H 1.09005 * 109.46824 * 330.02423 * 8 7 6 29 29 H 1.08994 * 109.47156 * 210.02526 * 8 7 6 30 30 H 0.96998 * 120.00219 * 174.92721 * 13 12 10 31 31 H 1.08999 * 115.55234 * 339.67176 * 18 9 8 32 32 H 1.09002 * 117.50053 * 0.02562 * 19 18 9 33 33 H 1.09003 * 117.49402 * 145.02222 * 19 18 9 34 34 H 1.08998 * 117.49233 * 214.97994 * 20 18 9 35 35 H 1.09002 * 117.50127 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2967 1.1247 -1.0797 6 7 5.5838 1.0222 -0.8156 7 6 5.9288 0.9936 0.4273 8 6 7.3461 0.8800 0.9268 9 7 7.9152 2.2200 1.0902 10 6 7.7894 2.8762 2.2855 11 1 7.6180 3.9424 2.3008 12 6 7.8819 2.1710 3.4776 13 7 8.4785 0.9981 3.5036 14 14 7.1599 2.8866 5.0447 15 1 5.7010 3.0987 4.8657 16 1 7.3894 1.9455 6.1702 17 1 7.8157 4.1848 5.3440 18 6 8.6137 2.8604 -0.0270 19 6 9.4616 4.0953 0.2847 20 6 8.1325 4.2470 -0.4594 21 16 4.5447 1.0963 1.4258 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.9077 1.1562 -2.0867 28 1 7.9411 0.3179 0.2068 29 1 7.3529 0.3628 1.8862 30 1 8.6086 0.5387 4.3480 31 1 8.9725 2.1869 -0.8053 32 1 9.5000 4.4310 1.3210 33 1 10.3781 4.2343 -0.2889 34 1 8.1751 4.4856 -1.5221 35 1 7.2959 4.6825 0.0871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342640915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:20 Heat of formation + Delta-G solvation = 32.864600 kcal Electronic energy + Delta-G solvation = -18200.025202 eV Core-core repulsion = 15326.240504 eV Total energy + Delta-G solvation = -2873.784698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56243 -38.90591 -38.56036 -35.51380 -33.41121 -32.03890 -29.31765 -27.46057 -26.42610 -25.33903 -23.99867 -22.96989 -21.73501 -20.31790 -19.08680 -18.24908 -17.42576 -17.29201 -16.69657 -16.38450 -16.36245 -15.70554 -15.35030 -15.27341 -14.51081 -14.31656 -13.74021 -13.49627 -13.30371 -13.07439 -12.71646 -12.63882 -12.37261 -12.32082 -12.20345 -12.07134 -11.95824 -11.49154 -10.99123 -10.71624 -10.52181 -10.42430 -10.15620 -9.68470 -8.54336 -7.95909 -5.53281 -0.19048 0.54671 1.04043 1.43287 1.47709 1.52777 1.93043 2.43777 2.99512 3.10561 3.32144 3.48960 3.61339 3.97611 4.10970 4.28368 4.35027 4.41305 4.47873 4.54226 4.56336 4.59149 4.69923 4.84912 4.85905 4.92254 5.03040 5.26003 5.31720 5.45069 5.52677 5.65604 6.16179 6.38407 6.93019 7.03289 7.69140 8.24417 9.04203 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.006662 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.387390 B = 4202.066000 C = 5135.089008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.151 3.849 4 C -0.259 4.259 5 C 0.050 3.950 6 N -0.505 5.505 7 C 0.061 3.939 8 C 0.216 3.784 9 N -0.548 5.548 10 C -0.265 4.265 11 H 0.054 0.946 12 C -0.015 4.015 13 N -0.908 5.908 14 Si 0.941 3.059 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.105 3.895 19 C -0.183 4.183 20 C -0.205 4.205 21 S 0.111 5.889 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.194 0.806 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.260 0.740 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 0.656 -6.622 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.072 3.928 4 C -0.381 4.381 5 C -0.102 4.102 6 N -0.221 5.221 7 C -0.218 4.218 8 C 0.086 3.914 9 N -0.264 5.264 10 C -0.395 4.395 11 H 0.071 0.929 12 C -0.214 4.214 13 N -0.550 5.550 14 Si 0.768 3.232 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.003 4.003 19 C -0.221 4.221 20 C -0.246 4.246 21 S 0.367 5.633 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.211 0.789 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.731 0.282 -5.756 13.070 hybrid contribution -0.610 0.604 0.147 0.871 sum -12.341 0.886 -5.608 13.585 Atomic orbital electron populations 1.22976 0.78849 1.04021 1.01298 1.87958 1.21899 1.27938 1.95670 1.20615 0.84431 0.85128 1.02601 1.25846 1.00723 1.16285 0.95269 1.22082 0.86988 1.00340 1.00824 1.66413 1.18180 1.18456 1.19008 1.28865 1.02636 0.99338 0.90996 1.19613 0.82973 0.88204 1.00651 1.43387 1.58483 1.15880 1.08643 1.18943 1.44741 0.92677 0.83172 0.92883 1.25736 0.98113 0.97396 1.00189 1.69942 1.41840 1.16819 1.26428 0.85739 0.79412 0.78193 0.79827 1.19918 1.21130 1.19969 1.21353 0.98312 0.88052 0.92566 1.23086 0.94410 1.04040 1.00587 1.23224 0.97219 1.04584 0.99530 1.84137 0.99586 1.66822 1.12760 0.93123 0.92194 0.88526 0.91623 0.88762 0.78896 0.92138 0.88650 0.93022 0.88036 0.90491 0.87694 0.88180 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -10.85 10.69 -148.98 -1.59 -12.45 16 3 C 0.15 3.75 6.47 71.24 0.46 4.21 16 4 C -0.26 -8.61 6.23 24.64 0.15 -8.45 16 5 C 0.05 1.72 11.25 83.65 0.94 2.66 16 6 N -0.50 -20.63 10.54 -191.44 -2.02 -22.65 16 7 C 0.06 2.66 6.97 88.52 0.62 3.27 16 8 C 0.22 10.24 5.91 85.63 0.51 10.75 16 9 N -0.55 -26.78 2.77 -682.32 -1.89 -28.67 16 10 C -0.27 -13.85 8.05 84.03 0.68 -13.17 16 11 H 0.05 2.85 7.19 -2.91 -0.02 2.83 16 12 C -0.02 -0.79 4.97 84.86 0.42 -0.37 16 13 N -0.91 -49.79 11.44 21.65 0.25 -49.54 16 14 Si 0.94 42.46 29.61 68.60 2.03 44.49 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.11 4.52 6.61 44.99 0.30 4.81 16 19 C -0.18 -7.10 9.81 30.62 0.30 -6.80 16 20 C -0.21 -7.88 10.08 30.62 0.31 -7.57 16 21 S 0.11 4.44 23.18 -56.49 -1.31 3.13 16 22 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.19 5.16 8.06 -2.91 -0.02 5.14 16 28 H 0.06 2.79 8.04 -2.38 -0.02 2.78 16 29 H 0.10 4.99 5.50 -2.39 -0.01 4.97 16 30 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 31 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16 32 H 0.08 3.36 6.95 -2.39 -0.02 3.34 16 33 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.06 2.67 7.99 -2.39 -0.02 2.65 16 Total: -1.00 -60.53 314.05 2.48 -58.05 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.08 Total: 16.65 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.93 Total: -9.02 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -3.66 Total: -100.86 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.59 Total: -12.45 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal Total: -60.53 2.48 -58.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342640915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.915 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds