Wall clock time and date at job start Mon Mar 30 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 N 1.46500 * 109.47512 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00048 * 179.97438 * 15 14 13 17 17 O 1.21698 * 120.00235 * 0.02562 * 16 15 14 18 18 C 1.46583 * 119.99780 * 180.02562 * 16 15 14 19 19 C 1.36650 * 125.46202 * 180.02562 * 18 16 15 20 20 C 1.37468 * 113.29895 * 179.97438 * 19 18 16 21 21 C 1.33814 * 115.10280 * 0.02562 * 20 19 18 22 22 S 1.70616 * 110.95338 * 359.75723 * 21 20 19 23 23 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 24 24 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 25 25 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 26 26 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 27 27 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 28 28 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 29 29 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 30 30 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 31 31 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 32 32 H 0.97005 * 119.99392 * 359.97438 * 15 14 13 33 33 H 1.08001 * 123.34458 * 359.94739 * 19 18 16 34 34 H 1.07998 * 122.44885 * 180.02562 * 20 19 18 35 35 H 1.07998 * 124.52346 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 7 2.6582 0.3800 4.7187 16 6 3.0845 -0.0686 5.9159 17 8 3.4184 -1.2317 6.0462 18 6 3.1460 0.8443 7.0611 19 6 3.5593 0.5101 8.3200 20 6 3.5174 1.5626 9.2033 21 6 3.0846 2.7193 8.6881 22 16 2.7059 2.5464 7.0335 23 1 -0.3633 -1.0214 0.1140 24 1 -0.3633 0.6094 0.8274 25 1 -0.3634 0.4118 -0.9415 26 1 2.2478 -1.8381 -3.4691 27 1 2.9173 -1.1203 1.0288 28 1 2.7587 1.0465 2.1182 29 1 1.0870 0.6165 2.5525 30 1 1.9201 -1.3563 3.8031 31 1 3.5916 -0.9259 3.3684 32 1 2.3925 1.3071 4.6147 33 1 3.8859 -0.4822 8.5938 34 1 3.8121 1.4633 10.2376 35 1 2.9911 3.6402 9.2444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381183830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:53 Heat of formation + Delta-G solvation = -6.896881 kcal Electronic energy + Delta-G solvation = -17256.655592 eV Core-core repulsion = 14381.146707 eV Total energy + Delta-G solvation = -2875.508885 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85862 -37.82916 -36.58539 -34.73135 -32.57521 -30.76813 -29.69785 -27.10181 -25.15093 -24.53294 -22.17634 -21.42766 -19.71540 -19.58438 -18.75060 -17.52534 -16.36470 -15.98005 -15.81419 -15.26444 -14.84356 -14.21672 -13.90564 -13.75049 -13.34128 -13.09503 -13.03280 -12.70824 -12.60199 -11.92095 -11.83022 -11.54681 -11.33838 -11.07497 -10.80966 -10.44653 -10.22274 -10.01139 -9.72005 -9.34202 -9.07513 -8.94522 -8.93269 -8.27964 -7.64176 -6.50750 -4.12221 0.19043 1.12412 1.52795 2.09230 2.97306 3.04178 3.34594 3.37392 3.56245 4.43901 4.54546 4.65924 4.95644 4.97252 5.13049 5.21720 5.22733 5.43170 5.60645 5.71366 5.82241 5.96928 6.07360 6.13788 6.31335 6.39136 6.64254 6.75015 6.87066 7.29497 7.42032 7.66043 8.00618 8.02172 8.34376 8.40016 8.90305 9.57061 10.89647 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037597 B = 0.003272 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.560560 B = 8554.276435 C = 9058.364817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.190 3.810 3 H -0.006 1.006 4 C -0.607 4.607 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.046 3.954 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.588 3.412 17 O -0.528 6.528 18 C -0.263 4.263 19 C -0.058 4.058 20 C -0.150 4.150 21 C -0.232 4.232 22 S 0.201 5.799 23 H 0.051 0.949 24 H 0.017 0.983 25 H 0.053 0.947 26 H 0.269 0.731 27 H 0.340 0.660 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.397 0.603 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 9.944 23.994 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 H 0.012 0.988 4 C -0.645 4.645 5 H 0.079 0.921 6 C -0.174 4.174 7 N -0.537 5.537 8 Si 0.876 3.124 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.308 5.308 13 C -0.084 4.084 14 C -0.002 4.002 15 N -0.374 5.374 16 C 0.373 3.627 17 O -0.406 6.406 18 C -0.383 4.383 19 C -0.092 4.092 20 C -0.181 4.181 21 C -0.370 4.370 22 S 0.468 5.532 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.151 10.991 21.974 24.570 hybrid contribution 1.665 -1.050 2.118 2.892 sum 1.815 9.941 24.093 26.126 Atomic orbital electron populations 1.22140 0.98210 1.00428 0.98849 1.19429 0.92200 0.92338 0.87912 0.98814 1.22084 1.40948 1.10313 0.91193 0.92082 1.25736 0.94597 1.05045 0.92030 1.70847 1.41448 1.10001 1.31446 0.83999 0.77051 0.75231 0.76098 1.21050 1.19985 1.21203 1.60508 1.32958 1.32270 1.05106 1.22112 1.00244 0.94699 0.91379 1.21436 1.02174 0.92604 0.84004 1.45854 1.67277 1.14322 1.09903 1.16921 0.77503 0.86673 0.81555 1.90845 1.48736 1.17132 1.83931 1.24725 1.15926 0.98393 0.99268 1.20831 0.96899 1.00910 0.90537 1.20066 1.04351 0.91848 1.01832 1.25339 1.07772 1.03619 1.00256 1.83095 1.60726 1.03479 1.05880 0.93016 0.96384 0.92833 0.92119 0.84220 0.95468 0.91092 0.90226 0.91265 0.76939 0.82814 0.83667 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.05 37.16 0.34 -2.74 16 2 C 0.19 4.45 2.18 -68.87 -0.15 4.30 16 3 H -0.01 -0.13 6.46 -51.92 -0.34 -0.47 16 4 C -0.61 -16.83 8.83 -34.44 -0.30 -17.13 16 5 H 0.06 1.82 7.92 -52.49 -0.42 1.41 16 6 C 0.03 0.90 5.29 -17.82 -0.09 0.81 16 7 N -0.90 -27.51 13.70 55.43 0.76 -26.76 16 8 Si 1.05 24.76 26.29 -169.99 -4.47 20.29 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.27 -5.97 5.76 56.52 0.33 -5.64 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.68 -13.67 6.30 -107.95 -0.68 -14.35 16 13 C 0.05 0.74 5.60 -3.83 -0.02 0.71 16 14 C 0.12 1.76 5.93 -4.04 -0.02 1.74 16 15 N -0.72 -9.10 5.55 -61.65 -0.34 -9.44 16 16 C 0.59 8.17 7.78 -12.90 -0.10 8.07 16 17 O -0.53 -9.22 16.84 5.19 0.09 -9.13 16 18 C -0.26 -2.89 6.45 -36.79 -0.24 -3.13 16 19 C -0.06 -0.57 10.01 -40.44 -0.40 -0.98 16 20 C -0.15 -1.13 10.15 -41.42 -0.42 -1.55 16 21 C -0.23 -1.58 10.92 29.18 0.32 -1.27 16 22 S 0.20 1.58 22.16 -107.50 -2.38 -0.80 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.34 7.62 -51.93 -0.40 -0.06 16 25 H 0.05 1.23 4.88 -51.93 -0.25 0.97 16 26 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 27 H 0.34 6.91 8.26 -39.29 -0.32 6.58 16 28 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 29 H 0.07 1.09 7.56 -51.93 -0.39 0.70 16 30 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.40 4.05 7.59 -40.82 -0.31 3.74 16 33 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -32.10 308.66 -8.09 -40.19 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.61 Total: 6.50 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.10 Total: -11.16 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.26 Total: -50.54 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.47 Total: 20.29 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.38 Total: -0.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.10 -8.09 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381183830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.289 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds