Wall clock time and date at job start Mon Mar 30 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.52996 * 109.47062 * 180.02562 * 13 12 2 15 15 N 1.46500 * 109.47512 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00048 * 179.97438 * 15 14 13 17 17 O 1.21698 * 120.00235 * 0.02562 * 16 15 14 18 18 C 1.46583 * 119.99780 * 180.02562 * 16 15 14 19 19 C 1.36650 * 125.46202 * 180.02562 * 18 16 15 20 20 C 1.37468 * 113.29895 * 179.97438 * 19 18 16 21 21 C 1.33814 * 115.10280 * 0.02562 * 20 19 18 22 22 S 1.70616 * 110.95338 * 359.75723 * 21 20 19 23 23 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 24 24 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 25 25 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 26 26 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 27 27 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 28 28 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 29 29 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 30 30 H 1.09007 * 109.46822 * 300.00021 * 14 13 12 31 31 H 1.09000 * 109.47280 * 59.99408 * 14 13 12 32 32 H 0.97005 * 119.99392 * 359.97438 * 15 14 13 33 33 H 1.08001 * 123.34458 * 359.94739 * 19 18 16 34 34 H 1.07998 * 122.44885 * 180.02562 * 20 19 18 35 35 H 1.07998 * 124.52346 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5962 -0.5325 3.5742 15 7 2.6582 0.3800 4.7187 16 6 3.0845 -0.0686 5.9159 17 8 3.4184 -1.2317 6.0462 18 6 3.1460 0.8443 7.0611 19 6 3.5593 0.5101 8.3200 20 6 3.5174 1.5626 9.2033 21 6 3.0846 2.7193 8.6881 22 16 2.7059 2.5464 7.0335 23 1 -0.3633 -1.0214 0.1140 24 1 -0.3633 0.6094 0.8274 25 1 -0.3634 0.4118 -0.9415 26 1 2.2478 -1.8381 -3.4691 27 1 2.9173 -1.1203 1.0288 28 1 2.7587 1.0465 2.1182 29 1 1.0870 0.6165 2.5525 30 1 1.9201 -1.3563 3.8031 31 1 3.5916 -0.9259 3.3684 32 1 2.3925 1.3071 4.6147 33 1 3.8859 -0.4822 8.5938 34 1 3.8121 1.4633 10.2376 35 1 2.9911 3.6402 9.2444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381183830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:53 Heat of formation + Delta-G solvation = -31.453855 kcal Electronic energy + Delta-G solvation = -17257.720463 eV Core-core repulsion = 14381.146707 eV Total energy + Delta-G solvation = -2876.573756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90722 -38.60334 -38.08114 -36.12465 -34.49127 -32.15401 -30.77984 -28.42467 -26.78784 -25.71783 -23.41863 -22.46323 -21.52933 -20.35987 -19.76279 -19.44104 -17.33839 -17.09999 -16.86245 -16.44681 -15.98762 -15.82792 -15.46061 -14.92972 -14.65471 -14.44775 -13.89492 -13.84605 -13.69396 -13.38292 -13.26722 -13.12794 -12.71383 -12.36205 -12.24161 -11.95614 -11.84138 -11.56233 -11.32932 -10.99198 -10.42404 -10.37873 -9.85606 -9.53968 -9.27102 -8.75546 -6.39026 -0.52056 0.47070 0.91938 1.39078 1.46985 1.53911 1.73081 1.93055 2.10503 2.49396 3.05600 3.51808 3.70578 3.94053 4.09581 4.14581 4.34401 4.43066 4.53918 4.57002 4.82818 4.85691 4.89577 4.94217 5.01975 5.08967 5.20942 5.23692 5.35005 5.60224 5.76903 6.01152 6.22408 6.32318 6.61714 6.72022 6.99141 7.40474 8.62503 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037597 B = 0.003272 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.560560 B = 8554.276435 C = 9058.364817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.192 3.808 3 H 0.005 0.995 4 C -0.611 4.611 5 H 0.021 0.979 6 C -0.021 4.021 7 N -0.938 5.938 8 Si 1.087 2.913 9 H -0.291 1.291 10 H -0.239 1.239 11 H -0.264 1.264 12 N -0.687 5.687 13 C 0.053 3.947 14 C 0.133 3.867 15 N -0.712 5.712 16 C 0.586 3.414 17 O -0.577 6.577 18 C -0.305 4.305 19 C -0.059 4.059 20 C -0.160 4.160 21 C -0.216 4.216 22 S 0.237 5.763 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.251 0.749 27 H 0.335 0.665 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 13.471 26.406 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.082 3.918 3 H 0.022 0.978 4 C -0.649 4.649 5 H 0.039 0.961 6 C -0.219 4.219 7 N -0.574 5.574 8 Si 0.907 3.093 9 H -0.217 1.217 10 H -0.163 1.163 11 H -0.189 1.189 12 N -0.318 5.318 13 C -0.077 4.077 14 C 0.009 3.991 15 N -0.364 5.364 16 C 0.374 3.626 17 O -0.458 6.458 18 C -0.425 4.425 19 C -0.094 4.094 20 C -0.190 4.190 21 C -0.354 4.354 22 S 0.504 5.496 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.164 0.836 34 H 0.188 0.812 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.717 14.540 24.418 28.429 hybrid contribution 1.985 -2.170 1.484 3.294 sum 1.267 12.371 25.903 28.733 Atomic orbital electron populations 1.22047 0.96916 1.00368 0.99948 1.19309 0.93112 0.92203 0.87163 0.97773 1.22348 1.39969 1.08995 0.93595 0.96061 1.27267 0.94178 1.08731 0.91731 1.70987 1.44110 1.09562 1.32700 0.83551 0.79008 0.70299 0.76405 1.21691 1.16340 1.18890 1.60424 1.32879 1.33266 1.05238 1.22107 1.01479 0.94175 0.89908 1.21127 1.01183 0.92505 0.84299 1.45670 1.66964 1.14681 1.09083 1.17351 0.76398 0.86538 0.82315 1.90809 1.50955 1.19310 1.84760 1.24537 1.19106 1.00289 0.98580 1.21037 0.96116 1.01484 0.90766 1.20251 1.04805 0.91274 1.02710 1.25817 1.05263 1.04511 0.99796 1.82923 1.59745 1.00325 1.06602 0.94372 0.92751 0.93540 0.93961 0.84793 0.94205 0.89603 0.91579 0.92295 0.75300 0.83632 0.81249 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.05 71.98 0.65 -5.00 16 2 C 0.19 8.68 2.18 44.17 0.10 8.77 16 3 H 0.00 0.21 6.46 -2.38 -0.02 0.19 16 4 C -0.61 -34.36 8.83 25.60 0.23 -34.13 16 5 H 0.02 1.32 7.92 -2.91 -0.02 1.30 16 6 C -0.02 -1.19 5.29 84.65 0.45 -0.74 16 7 N -0.94 -58.75 13.70 21.45 0.29 -58.45 16 8 Si 1.09 48.32 26.29 68.60 1.80 50.12 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.24 -9.30 5.76 99.48 0.57 -8.73 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 N -0.69 -27.18 6.30 -495.45 -3.12 -30.31 16 13 C 0.05 1.58 5.60 86.30 0.48 2.06 16 14 C 0.13 3.79 5.93 86.38 0.51 4.31 16 15 N -0.71 -17.17 5.55 -467.18 -2.59 -19.76 16 16 C 0.59 16.24 7.78 86.42 0.67 16.91 16 17 O -0.58 -20.81 16.84 -4.34 -0.07 -20.89 16 18 C -0.31 -6.39 6.45 24.08 0.16 -6.24 16 19 C -0.06 -1.11 10.01 21.72 0.22 -0.89 16 20 C -0.16 -1.96 10.15 21.08 0.21 -1.74 16 21 C -0.22 -2.11 10.92 66.81 0.73 -1.38 16 22 S 0.24 3.02 22.16 -56.49 -1.25 1.77 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.87 7.62 -2.39 -0.02 1.85 16 25 H 0.05 1.99 4.88 -2.39 -0.01 1.98 16 26 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 27 H 0.33 13.78 8.26 -89.69 -0.74 13.03 16 28 H 0.04 1.12 8.05 -2.39 -0.02 1.10 16 29 H 0.09 2.33 7.56 -2.39 -0.02 2.31 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 7.47 7.59 -92.70 -0.70 6.77 16 33 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.20 0.64 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -71.93 308.66 -1.04 -72.97 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.50 Total: 22.62 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.41 Total: -18.07 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -5.42 Total: -108.52 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.89 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.80 Total: 50.12 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.25 Total: 1.77 kcal Total: -71.93 -1.04 -72.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381183830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.516 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds