Wall clock time and date at job start Mon Mar 30 2020 04:40:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08994 * 109.47303 * 2 1
4 4 C 1.50707 * 109.47269 * 120.00276 * 2 1 3
5 5 H 1.07997 * 120.00086 * 119.99845 * 4 2 1
6 6 C 1.37879 * 119.99592 * 299.99908 * 4 2 1
7 7 N 1.31510 * 120.00123 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 119.99770 * 179.97438 * 6 4 2
9 9 H 1.48509 * 109.47161 * 60.00012 * 8 6 4
10 10 H 1.48497 * 109.47456 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.47316 * 300.00360 * 8 6 4
12 12 N 1.46503 * 109.47245 * 239.99752 * 2 1 3
13 13 N 1.40108 * 119.99543 * 89.99923 * 12 2 1
14 14 C 1.29775 * 119.99839 * 180.02562 * 13 12 2
15 15 C 1.47378 * 120.00013 * 180.02562 * 14 13 12
16 16 C 1.39877 * 120.59199 * 174.55937 * 15 14 13
17 17 C 1.38454 * 118.38059 * 179.80428 * 16 15 14
18 18 C 1.38380 * 119.47219 * 0.47611 * 17 16 15
19 19 Cl 1.73606 * 119.41724 * 179.74597 * 18 17 16
20 20 N 1.32079 * 121.16963 * 359.76343 * 18 17 16
21 21 C 1.32286 * 121.76438 * 359.97438 * 20 18 17
22 22 N 1.38772 * 119.80642 * 179.97438 * 21 20 18
23 23 H 1.09004 * 109.47291 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47126 * 59.99702 * 1 2 3
25 25 H 1.09001 * 109.46887 * 299.99703 * 1 2 3
26 26 H 0.97003 * 119.99614 * 179.97438 * 7 6 4
27 27 H 0.96999 * 120.00466 * 270.00211 * 12 2 1
28 28 H 1.07997 * 119.99883 * 0.02562 * 14 13 12
29 29 H 1.08001 * 120.80688 * 359.97438 * 16 15 14
30 30 H 1.08007 * 120.26295 * 180.21753 * 17 16 15
31 31 H 0.96997 * 119.99825 * 185.31701 * 22 21 20
32 32 H 0.96998 * 119.99634 * 5.31967 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.6533 -1.5886 1.1313
6 6 1.6993 -0.2394 2.4828
7 7 0.9436 0.8301 2.6034
8 14 2.3214 -1.1204 4.0079
9 1 3.8064 -1.1210 4.0081
10 1 1.8270 -0.4200 5.2204
11 1 1.8259 -2.5204 4.0077
12 7 2.0184 -0.6907 -1.1961
13 7 2.2518 0.0299 -2.3748
14 6 2.6840 -0.5819 -3.4346
15 6 2.9301 0.1762 -4.6742
16 6 3.5020 -0.4472 -5.7882
17 6 3.7091 0.3073 -6.9304
18 6 3.3578 1.6457 -6.9353
19 17 3.6243 2.5921 -8.3661
20 7 2.8235 2.2161 -5.8706
21 6 2.5999 1.5392 -4.7563
22 7 2.0369 2.1795 -3.6613
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 0.5138 0.8900
26 1 0.7090 1.1613 3.4845
27 1 2.1800 -1.6468 -1.1722
28 1 2.8632 -1.6465 -3.4080
29 1 3.7727 -1.4923 -5.7589
30 1 4.1454 -0.1442 -7.8093
31 1 1.9427 1.7075 -2.8191
32 1 1.7376 3.0989 -3.7383
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000381627765.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:48
Heat of formation + Delta-G solvation = 75.310541 kcal
Electronic energy + Delta-G solvation = -17241.224982 eV
Core-core repulsion = 14263.696829 eV
Total energy + Delta-G solvation = -2977.528154 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 268.079 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.14515 -37.01160 -36.45425 -34.64069 -34.02721 -32.54736 -30.99503 -29.28055
-27.24578 -25.34704 -23.69319 -22.94279 -20.87678 -20.48041 -17.75637 -17.48295
-16.86447 -15.81226 -15.52028 -14.99846 -14.83245 -14.58749 -14.30797 -13.54627
-13.16503 -12.88061 -12.61161 -12.31149 -12.06102 -11.56785 -11.30349 -11.12985
-10.99790 -10.78576 -10.47576 -10.36995 -10.31607 -9.96868 -9.55904 -9.43558
-9.15344 -8.62219 -7.96194 -6.82843 -6.24155 -4.33214 0.86731 1.48958
1.82854 2.79543 3.19148 3.24336 3.24935 3.47750 3.95931 3.99457
4.27691 4.73982 4.87959 5.08586 5.15202 5.27589 5.51044 5.71936
6.00755 6.09583 6.44677 6.59523 6.77853 6.85025 6.99633 7.42477
7.51210 7.62125 7.64953 7.73881 7.99969 8.13629 8.46213 8.73781
9.08960 9.34197 10.81613
Molecular weight = 268.08amu
Principal moments of inertia in cm(-1)
A = 0.048286 B = 0.003351 C = 0.003250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 579.743955 B = 8354.029313 C = 8613.456693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.296 3.704
3 H 0.041 0.959
4 C -0.534 4.534
5 H 0.061 0.939
6 C 0.068 3.932
7 N -0.885 5.885
8 Si 0.904 3.096
9 H -0.276 1.276
10 H -0.285 1.285
11 H -0.276 1.276
12 N -0.619 5.619
13 N -0.223 5.223
14 C 0.020 3.980
15 C -0.134 4.134
16 C -0.014 4.014
17 C -0.222 4.222
18 C 0.224 3.776
19 Cl -0.047 7.047
20 N -0.550 5.550
21 C 0.443 3.557
22 N -0.828 5.828
23 H 0.028 0.972
24 H 0.012 0.988
25 H 0.091 0.909
26 H 0.266 0.734
27 H 0.374 0.626
28 H 0.112 0.888
29 H 0.144 0.856
30 H 0.139 0.861
31 H 0.428 0.572
32 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.742 -1.506 -15.898 16.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.194 3.806
3 H 0.059 0.941
4 C -0.573 4.573
5 H 0.079 0.921
6 C -0.135 4.135
7 N -0.523 5.523
8 Si 0.731 3.269
9 H -0.201 1.201
10 H -0.210 1.210
11 H -0.201 1.201
12 N -0.355 5.355
13 N -0.037 5.037
14 C -0.188 4.188
15 C -0.145 4.145
16 C -0.043 4.043
17 C -0.246 4.246
18 C 0.057 3.943
19 Cl -0.018 7.018
20 N -0.271 5.271
21 C 0.200 3.800
22 N -0.383 5.383
23 H 0.047 0.953
24 H 0.031 0.969
25 H 0.110 0.890
26 H 0.076 0.924
27 H 0.210 0.790
28 H 0.129 0.871
29 H 0.161 0.839
30 H 0.157 0.843
31 H 0.278 0.722
32 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges 3.077 0.508 -15.176 15.494
hybrid contribution 0.602 -2.104 0.829 2.340
sum 3.680 -1.596 -14.348 14.898
Atomic orbital electron populations
1.22233 0.98855 0.99443 1.00616 1.18597 0.90208 0.93494 0.78317
0.94118 1.21165 1.32587 1.13478 0.90098 0.92130 1.24856 0.94715
0.94964 0.99012 1.69864 1.35778 1.22409 1.24214 0.86462 0.79215
0.79602 0.81579 1.20123 1.21024 1.20115 1.48998 1.72456 1.07928
1.06154 1.72439 1.07616 1.28598 0.95015 1.23216 1.07572 0.97128
0.90871 1.18756 1.08485 0.92363 0.94853 1.21263 0.93002 0.99775
0.90240 1.21253 1.09890 0.92762 1.00741 1.21173 0.96112 0.88824
0.88155 1.98382 1.94350 1.74361 1.34755 1.66303 1.21484 1.39634
0.99719 1.18241 0.88305 0.87415 0.86065 1.43729 1.64623 1.17178
1.12771 0.95321 0.96900 0.89011 0.92377 0.78952 0.87057 0.83853
0.84284 0.72231 0.77787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.53 9.29 37.16 0.35 -3.18 16
2 C 0.30 7.03 3.23 -69.08 -0.22 6.81 16
3 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16
4 C -0.53 -13.67 8.74 -34.44 -0.30 -13.97 16
5 H 0.06 1.51 7.79 -52.49 -0.41 1.10 16
6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16
7 N -0.89 -23.76 11.32 55.43 0.63 -23.14 16
8 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16
9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
12 N -0.62 -12.48 6.10 -5.88 -0.04 -12.51 16
13 N -0.22 -4.08 7.82 32.14 0.25 -3.83 16
14 C 0.02 0.31 10.76 -14.70 -0.16 0.15 16
15 C -0.13 -1.94 5.90 -104.72 -0.62 -2.56 16
16 C -0.01 -0.16 9.93 -38.89 -0.39 -0.55 16
17 C -0.22 -2.49 9.85 -39.45 -0.39 -2.87 16
18 C 0.22 3.02 7.27 -17.39 -0.13 2.89 16
19 Cl -0.05 -0.55 29.10 -51.86 -1.51 -2.06 16
20 N -0.55 -8.55 10.35 -9.24 -0.10 -8.65 16
21 C 0.44 7.01 7.77 -154.83 -1.20 5.81 16
22 N -0.83 -13.05 8.95 31.33 0.28 -12.77 16
23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
25 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16
26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
27 H 0.37 6.98 8.58 -182.59 -1.57 5.41 16
28 H 0.11 1.45 8.02 -52.49 -0.42 1.02 16
29 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16
30 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16
31 H 0.43 7.41 5.02 -51.62 -0.26 7.15 16
32 H 0.39 5.52 8.95 -40.82 -0.37 5.15 16
LS Contribution 295.83 15.07 4.46 4.46
Total: -1.00 -27.21 295.83 -8.78 -35.99
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: -4.58 Total: 13.22 kcal
Atomic # 6 Polarization: -2.65 SS G_CDS: -3.15 Total: -5.80 kcal
Atomic # 7 Polarization: -61.93 SS G_CDS: 1.03 Total: -60.90 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal
Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal
Total LS contribution 4.46 Total: 4.46 kcal
Total: -27.21 -8.78 -35.99 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381627765.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.304 kcal
(2) G-P(sol) polarization free energy of solvation -27.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds