Wall clock time and date at job start Mon Mar 30 2020 04:40:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08994 * 109.47303 * 2 1
4 4 C 1.50707 * 109.47269 * 120.00276 * 2 1 3
5 5 H 1.07997 * 120.00086 * 119.99845 * 4 2 1
6 6 C 1.37879 * 119.99592 * 299.99908 * 4 2 1
7 7 N 1.31510 * 120.00123 * 359.97438 * 6 4 2
8 8 Si 1.86796 * 119.99770 * 179.97438 * 6 4 2
9 9 H 1.48509 * 109.47161 * 60.00012 * 8 6 4
10 10 H 1.48497 * 109.47456 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.47316 * 300.00360 * 8 6 4
12 12 N 1.46503 * 109.47245 * 239.99752 * 2 1 3
13 13 N 1.40108 * 119.99543 * 89.99923 * 12 2 1
14 14 C 1.29775 * 119.99839 * 180.02562 * 13 12 2
15 15 C 1.47378 * 120.00013 * 180.02562 * 14 13 12
16 16 C 1.39877 * 120.59199 * 174.55937 * 15 14 13
17 17 C 1.38454 * 118.38059 * 179.80428 * 16 15 14
18 18 C 1.38380 * 119.47219 * 0.47611 * 17 16 15
19 19 Cl 1.73606 * 119.41724 * 179.74597 * 18 17 16
20 20 N 1.32079 * 121.16963 * 359.76343 * 18 17 16
21 21 C 1.32286 * 121.76438 * 359.97438 * 20 18 17
22 22 N 1.38772 * 119.80642 * 179.97438 * 21 20 18
23 23 H 1.09004 * 109.47291 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47126 * 59.99702 * 1 2 3
25 25 H 1.09001 * 109.46887 * 299.99703 * 1 2 3
26 26 H 0.97003 * 119.99614 * 179.97438 * 7 6 4
27 27 H 0.96999 * 120.00466 * 270.00211 * 12 2 1
28 28 H 1.07997 * 119.99883 * 0.02562 * 14 13 12
29 29 H 1.08001 * 120.80688 * 359.97438 * 16 15 14
30 30 H 1.08007 * 120.26295 * 180.21753 * 17 16 15
31 31 H 0.96997 * 119.99825 * 185.31701 * 22 21 20
32 32 H 0.96998 * 119.99634 * 5.31967 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.6533 -1.5886 1.1313
6 6 1.6993 -0.2394 2.4828
7 7 0.9436 0.8301 2.6034
8 14 2.3214 -1.1204 4.0079
9 1 3.8064 -1.1210 4.0081
10 1 1.8270 -0.4200 5.2204
11 1 1.8259 -2.5204 4.0077
12 7 2.0184 -0.6907 -1.1961
13 7 2.2518 0.0299 -2.3748
14 6 2.6840 -0.5819 -3.4346
15 6 2.9301 0.1762 -4.6742
16 6 3.5020 -0.4472 -5.7882
17 6 3.7091 0.3073 -6.9304
18 6 3.3578 1.6457 -6.9353
19 17 3.6243 2.5921 -8.3661
20 7 2.8235 2.2161 -5.8706
21 6 2.5999 1.5392 -4.7563
22 7 2.0369 2.1795 -3.6613
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3633 0.5139 -0.8899
25 1 -0.3633 0.5138 0.8900
26 1 0.7090 1.1613 3.4845
27 1 2.1800 -1.6468 -1.1722
28 1 2.8632 -1.6465 -3.4080
29 1 3.7727 -1.4923 -5.7589
30 1 4.1454 -0.1442 -7.8093
31 1 1.9427 1.7075 -2.8191
32 1 1.7376 3.0989 -3.7383
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000381627765.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:40:47
Heat of formation + Delta-G solvation = 58.165609 kcal
Electronic energy + Delta-G solvation = -17241.968442 eV
Core-core repulsion = 14263.696829 eV
Total energy + Delta-G solvation = -2978.271614 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 268.079 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.21490 -38.29351 -37.58724 -36.13978 -35.27538 -33.95708 -32.52309 -30.48136
-28.71049 -27.28636 -24.90286 -23.99822 -22.36996 -21.95327 -19.12114 -18.54219
-18.41977 -17.19242 -16.91137 -16.58670 -15.93612 -15.68054 -15.61344 -15.04657
-14.51246 -14.27921 -14.07287 -13.56287 -13.30975 -13.10462 -12.85885 -12.72998
-12.47077 -12.26092 -12.22051 -12.09888 -11.47926 -11.25897 -11.02689 -10.69920
-10.54496 -10.52113 -9.19656 -8.25454 -8.13568 -6.34700 -0.20882 0.50556
0.83351 1.43876 1.44785 1.52584 1.61264 2.07389 2.44480 2.82860
2.91168 3.11562 3.76174 3.79427 4.12785 4.26344 4.49289 4.65494
4.75383 4.96842 5.01319 5.04523 5.13562 5.36493 5.53406 5.57451
5.76085 5.87174 6.15158 6.31983 6.46156 6.54189 6.84145 7.26514
7.37626 7.73255 8.86293
Molecular weight = 268.08amu
Principal moments of inertia in cm(-1)
A = 0.048286 B = 0.003351 C = 0.003250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 579.743955 B = 8354.029313 C = 8613.456693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.308 3.692
3 H 0.004 0.996
4 C -0.548 4.548
5 H 0.063 0.937
6 C 0.020 3.980
7 N -0.914 5.914
8 Si 0.967 3.033
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.268 1.268
12 N -0.635 5.635
13 N -0.264 5.264
14 C 0.056 3.944
15 C -0.164 4.164
16 C 0.010 3.990
17 C -0.211 4.211
18 C 0.211 3.789
19 Cl -0.035 7.035
20 N -0.575 5.575
21 C 0.424 3.576
22 N -0.837 5.837
23 H 0.030 0.970
24 H 0.019 0.981
25 H 0.067 0.933
26 H 0.266 0.734
27 H 0.379 0.621
28 H 0.142 0.858
29 H 0.187 0.813
30 H 0.176 0.824
31 H 0.422 0.578
32 H 0.396 0.604
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.016 -3.431 -17.756 18.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.204 3.796
3 H 0.022 0.978
4 C -0.587 4.587
5 H 0.081 0.919
6 C -0.181 4.181
7 N -0.552 5.552
8 Si 0.792 3.208
9 H -0.198 1.198
10 H -0.209 1.209
11 H -0.193 1.193
12 N -0.373 5.373
13 N -0.074 5.074
14 C -0.153 4.153
15 C -0.174 4.174
16 C -0.018 4.018
17 C -0.235 4.235
18 C 0.045 3.955
19 Cl -0.006 7.006
20 N -0.297 5.297
21 C 0.182 3.818
22 N -0.392 5.392
23 H 0.049 0.951
24 H 0.038 0.962
25 H 0.086 0.914
26 H 0.075 0.925
27 H 0.217 0.783
28 H 0.159 0.841
29 H 0.204 0.796
30 H 0.193 0.807
31 H 0.269 0.731
32 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges 4.362 -1.421 -17.075 17.680
hybrid contribution 0.306 -1.465 1.047 1.826
sum 4.668 -2.886 -16.028 16.942
Atomic orbital electron populations
1.22050 0.98871 0.99185 0.99700 1.18116 0.90124 0.91693 0.79681
0.97809 1.21513 1.32494 1.13594 0.91129 0.91860 1.25668 0.94903
0.95621 1.01866 1.69997 1.36826 1.23677 1.24699 0.85475 0.78583
0.78718 0.78024 1.19847 1.20930 1.19258 1.48400 1.74827 1.07783
1.06251 1.72532 1.10844 1.28874 0.95198 1.23784 1.02937 0.98574
0.90031 1.18953 1.10773 0.92025 0.95673 1.21777 0.89982 1.01496
0.88528 1.21694 1.08344 0.91637 1.01875 1.21668 0.95717 0.90108
0.88043 1.98388 1.94175 1.74351 1.33735 1.66270 1.22515 1.40582
1.00329 1.18511 0.88891 0.88284 0.86125 1.43751 1.65226 1.17417
1.12809 0.95051 0.96192 0.91400 0.92459 0.78336 0.84105 0.79560
0.80700 0.73067 0.77535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.62 9.29 71.98 0.67 -5.95 16
2 C 0.31 15.11 3.23 44.25 0.14 15.25 16
3 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16
4 C -0.55 -28.51 8.74 25.60 0.22 -28.28 16
5 H 0.06 3.17 7.79 -2.91 -0.02 3.14 16
6 C 0.02 1.04 5.30 84.66 0.45 1.49 16
7 N -0.91 -50.35 11.32 21.45 0.24 -50.11 16
8 Si 0.97 41.36 29.54 68.60 2.03 43.38 16
9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
12 N -0.64 -25.85 6.10 -172.51 -1.05 -26.91 16
13 N -0.26 -9.62 7.82 -52.24 -0.41 -10.03 16
14 C 0.06 1.61 10.76 87.40 0.94 2.55 16
15 C -0.16 -4.35 5.90 -19.93 -0.12 -4.47 16
16 C 0.01 0.18 9.93 22.72 0.23 0.41 16
17 C -0.21 -3.85 9.85 22.36 0.22 -3.63 16
18 C 0.21 5.18 7.27 84.69 0.62 5.79 16
19 Cl -0.03 -0.74 29.10 -2.72 -0.08 -0.82 16
20 N -0.58 -17.33 10.35 -183.15 -1.90 -19.22 16
21 C 0.42 13.14 7.77 133.51 1.04 14.18 16
22 N -0.84 -27.13 8.95 -54.78 -0.49 -27.62 16
23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
24 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
25 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16
26 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16
27 H 0.38 14.02 8.58 -213.32 -1.83 12.19 16
28 H 0.14 3.14 8.02 -2.91 -0.02 3.11 16
29 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16
30 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16
31 H 0.42 15.15 5.02 -106.83 -0.54 14.61 16
32 H 0.40 11.69 8.95 -92.71 -0.83 10.86 16
Total: -1.00 -60.34 295.83 0.74 -59.60
By element:
Atomic # 1 Polarization: 36.40 SS G_CDS: -2.01 Total: 34.39 kcal
Atomic # 6 Polarization: -7.07 SS G_CDS: 4.41 Total: -2.66 kcal
Atomic # 7 Polarization: -130.29 SS G_CDS: -3.60 Total: -133.89 kcal
Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal
Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal
Total: -60.34 0.74 -59.60 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381627765.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.766 kcal
(2) G-P(sol) polarization free energy of solvation -60.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds