Wall clock time and date at job start Mon Mar 30 2020 04:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47303 * 2 1 4 4 C 1.50707 * 109.47269 * 120.00276 * 2 1 3 5 5 H 1.07997 * 120.00086 * 119.99845 * 4 2 1 6 6 C 1.37879 * 119.99592 * 299.99908 * 4 2 1 7 7 N 1.31510 * 120.00123 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99770 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47161 * 60.00012 * 8 6 4 10 10 H 1.48497 * 109.47456 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47316 * 300.00360 * 8 6 4 12 12 N 1.46503 * 109.47245 * 239.99752 * 2 1 3 13 13 N 1.40108 * 119.99543 * 89.99923 * 12 2 1 14 14 C 1.29775 * 119.99839 * 180.02562 * 13 12 2 15 15 C 1.47378 * 120.00013 * 180.02562 * 14 13 12 16 16 C 1.39877 * 120.59199 * 174.55937 * 15 14 13 17 17 C 1.38454 * 118.38059 * 179.80428 * 16 15 14 18 18 C 1.38380 * 119.47219 * 0.47611 * 17 16 15 19 19 Cl 1.73606 * 119.41724 * 179.74597 * 18 17 16 20 20 N 1.32079 * 121.16963 * 359.76343 * 18 17 16 21 21 C 1.32286 * 121.76438 * 359.97438 * 20 18 17 22 22 N 1.38772 * 119.80642 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.47291 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47126 * 59.99702 * 1 2 3 25 25 H 1.09001 * 109.46887 * 299.99703 * 1 2 3 26 26 H 0.97003 * 119.99614 * 179.97438 * 7 6 4 27 27 H 0.96999 * 120.00466 * 270.00211 * 12 2 1 28 28 H 1.07997 * 119.99883 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.80688 * 359.97438 * 16 15 14 30 30 H 1.08007 * 120.26295 * 180.21753 * 17 16 15 31 31 H 0.96997 * 119.99825 * 185.31701 * 22 21 20 32 32 H 0.96998 * 119.99634 * 5.31967 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2204 11 1 1.8259 -2.5204 4.0077 12 7 2.0184 -0.6907 -1.1961 13 7 2.2518 0.0299 -2.3748 14 6 2.6840 -0.5819 -3.4346 15 6 2.9301 0.1762 -4.6742 16 6 3.5020 -0.4472 -5.7882 17 6 3.7091 0.3073 -6.9304 18 6 3.3578 1.6457 -6.9353 19 17 3.6243 2.5921 -8.3661 20 7 2.8235 2.2161 -5.8706 21 6 2.5999 1.5392 -4.7563 22 7 2.0369 2.1795 -3.6613 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 0.7090 1.1613 3.4845 27 1 2.1800 -1.6468 -1.1722 28 1 2.8632 -1.6465 -3.4080 29 1 3.7727 -1.4923 -5.7589 30 1 4.1454 -0.1442 -7.8093 31 1 1.9427 1.7075 -2.8191 32 1 1.7376 3.0989 -3.7383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381627765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:47 Heat of formation + Delta-G solvation = 58.165609 kcal Electronic energy + Delta-G solvation = -17241.968442 eV Core-core repulsion = 14263.696829 eV Total energy + Delta-G solvation = -2978.271614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21490 -38.29351 -37.58724 -36.13978 -35.27538 -33.95708 -32.52309 -30.48136 -28.71049 -27.28636 -24.90286 -23.99822 -22.36996 -21.95327 -19.12114 -18.54219 -18.41977 -17.19242 -16.91137 -16.58670 -15.93612 -15.68054 -15.61344 -15.04657 -14.51246 -14.27921 -14.07287 -13.56287 -13.30975 -13.10462 -12.85885 -12.72998 -12.47077 -12.26092 -12.22051 -12.09888 -11.47926 -11.25897 -11.02689 -10.69920 -10.54496 -10.52113 -9.19656 -8.25454 -8.13568 -6.34700 -0.20882 0.50556 0.83351 1.43876 1.44785 1.52584 1.61264 2.07389 2.44480 2.82860 2.91168 3.11562 3.76174 3.79427 4.12785 4.26344 4.49289 4.65494 4.75383 4.96842 5.01319 5.04523 5.13562 5.36493 5.53406 5.57451 5.76085 5.87174 6.15158 6.31983 6.46156 6.54189 6.84145 7.26514 7.37626 7.73255 8.86293 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.048286 B = 0.003351 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.743955 B = 8354.029313 C = 8613.456693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.308 3.692 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.063 0.937 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.635 5.635 13 N -0.264 5.264 14 C 0.056 3.944 15 C -0.164 4.164 16 C 0.010 3.990 17 C -0.211 4.211 18 C 0.211 3.789 19 Cl -0.035 7.035 20 N -0.575 5.575 21 C 0.424 3.576 22 N -0.837 5.837 23 H 0.030 0.970 24 H 0.019 0.981 25 H 0.067 0.933 26 H 0.266 0.734 27 H 0.379 0.621 28 H 0.142 0.858 29 H 0.187 0.813 30 H 0.176 0.824 31 H 0.422 0.578 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -3.431 -17.756 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.204 3.796 3 H 0.022 0.978 4 C -0.587 4.587 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.373 5.373 13 N -0.074 5.074 14 C -0.153 4.153 15 C -0.174 4.174 16 C -0.018 4.018 17 C -0.235 4.235 18 C 0.045 3.955 19 Cl -0.006 7.006 20 N -0.297 5.297 21 C 0.182 3.818 22 N -0.392 5.392 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.217 0.783 28 H 0.159 0.841 29 H 0.204 0.796 30 H 0.193 0.807 31 H 0.269 0.731 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.362 -1.421 -17.075 17.680 hybrid contribution 0.306 -1.465 1.047 1.826 sum 4.668 -2.886 -16.028 16.942 Atomic orbital electron populations 1.22050 0.98871 0.99185 0.99700 1.18116 0.90124 0.91693 0.79681 0.97809 1.21513 1.32494 1.13594 0.91129 0.91860 1.25668 0.94903 0.95621 1.01866 1.69997 1.36826 1.23677 1.24699 0.85475 0.78583 0.78718 0.78024 1.19847 1.20930 1.19258 1.48400 1.74827 1.07783 1.06251 1.72532 1.10844 1.28874 0.95198 1.23784 1.02937 0.98574 0.90031 1.18953 1.10773 0.92025 0.95673 1.21777 0.89982 1.01496 0.88528 1.21694 1.08344 0.91637 1.01875 1.21668 0.95717 0.90108 0.88043 1.98388 1.94175 1.74351 1.33735 1.66270 1.22515 1.40582 1.00329 1.18511 0.88891 0.88284 0.86125 1.43751 1.65226 1.17417 1.12809 0.95051 0.96192 0.91400 0.92459 0.78336 0.84105 0.79560 0.80700 0.73067 0.77535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 9.29 71.98 0.67 -5.95 16 2 C 0.31 15.11 3.23 44.25 0.14 15.25 16 3 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 4 C -0.55 -28.51 8.74 25.60 0.22 -28.28 16 5 H 0.06 3.17 7.79 -2.91 -0.02 3.14 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.35 11.32 21.45 0.24 -50.11 16 8 Si 0.97 41.36 29.54 68.60 2.03 43.38 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 N -0.64 -25.85 6.10 -172.51 -1.05 -26.91 16 13 N -0.26 -9.62 7.82 -52.24 -0.41 -10.03 16 14 C 0.06 1.61 10.76 87.40 0.94 2.55 16 15 C -0.16 -4.35 5.90 -19.93 -0.12 -4.47 16 16 C 0.01 0.18 9.93 22.72 0.23 0.41 16 17 C -0.21 -3.85 9.85 22.36 0.22 -3.63 16 18 C 0.21 5.18 7.27 84.69 0.62 5.79 16 19 Cl -0.03 -0.74 29.10 -2.72 -0.08 -0.82 16 20 N -0.58 -17.33 10.35 -183.15 -1.90 -19.22 16 21 C 0.42 13.14 7.77 133.51 1.04 14.18 16 22 N -0.84 -27.13 8.95 -54.78 -0.49 -27.62 16 23 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 26 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.38 14.02 8.58 -213.32 -1.83 12.19 16 28 H 0.14 3.14 8.02 -2.91 -0.02 3.11 16 29 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.42 15.15 5.02 -106.83 -0.54 14.61 16 32 H 0.40 11.69 8.95 -92.71 -0.83 10.86 16 Total: -1.00 -60.34 295.83 0.74 -59.60 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -2.01 Total: 34.39 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.41 Total: -2.66 kcal Atomic # 7 Polarization: -130.29 SS G_CDS: -3.60 Total: -133.89 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -60.34 0.74 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381627765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.766 kcal (2) G-P(sol) polarization free energy of solvation -60.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds